Guide to the Human Genome
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Search of human proteins with 169162512

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169162512 PREDICTED: hypothetical protein [Homo sapiens]
         (119 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169162512 PREDICTED: hypothetical protein [Homo sapiens]           248   8e-67
gi|169161987 PREDICTED: hypothetical protein [Homo sapiens]           248   8e-67
gi|169161159 PREDICTED: hypothetical protein [Homo sapiens]           248   8e-67
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]          40   3e-04
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ...    39   7e-04
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ...    39   7e-04
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ...    39   7e-04
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]            39   0.001
gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]      39   0.001
gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens]      39   0.001
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]           39   0.001
gi|239752280 PREDICTED: similar to family with sequence similari...    39   0.001
gi|210032463 family with sequence similarity 48, member B2 [Homo...    39   0.001
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    38   0.002
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]            38   0.002
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]          38   0.002
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]            37   0.003
gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]      37   0.003
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]                37   0.003
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]       37   0.003
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho...    37   0.003
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho...    37   0.003
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho...    37   0.003
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho...    37   0.003
gi|32401437 H1 histone family, member N, testis-specific [Homo s...    37   0.003
gi|13376335 hypothetical protein LOC79946 [Homo sapiens]               37   0.005
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     36   0.006
gi|224465238 hypothetical protein LOC283999 [Homo sapiens]             36   0.008
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]            36   0.008

>gi|169162512 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score =  248 bits (633), Expect = 8e-67
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60
           MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA
Sbjct: 1   MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60

Query: 61  GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119
           GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN
Sbjct: 61  GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119


>gi|169161987 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score =  248 bits (633), Expect = 8e-67
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60
           MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA
Sbjct: 1   MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60

Query: 61  GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119
           GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN
Sbjct: 61  GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119


>gi|169161159 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score =  248 bits (633), Expect = 8e-67
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60
           MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA
Sbjct: 1   MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60

Query: 61  GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119
           GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN
Sbjct: 61  GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119


>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
          Length = 887

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 7   SLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPA 66
           S+ G G + P PR +LP+              G  +    FP ++A +   RP    A  
Sbjct: 452 SVSGKGEKHPPPRTQLPSSS------------GKISSGNSFPPQQAGSPLKRPFSAAAAI 499

Query: 67  AAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRP 111
           AAA AA    AA  A +A   +  A      AA   P+ + A  P
Sbjct: 500 AAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAP 544



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/28 (50%), Positives = 14/28 (50%)

Query: 52  APTHPTRPAGTTAPAAAAGAAPRGGAAP 79
           AP     PA   APAAAA AAP     P
Sbjct: 545 APAPAAAPAVAAAPAAAASAAPSHSQKP 572



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)

Query: 60  AGTTAPAAAAGAAPRGGAAPRARSAARRS 88
           A   APA A  AAP   AAP A ++A  S
Sbjct: 539 AAAAAPAPAPAAAPAVAAAPAAAASAAPS 567


>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
           sapiens]
          Length = 238

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 21/51 (41%), Positives = 25/51 (49%)

Query: 52  APTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
           AP      AGT AP AA   APRG + P        +WR+  E G A G+P
Sbjct: 95  APVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSP 145


>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
           sapiens]
          Length = 238

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 21/51 (41%), Positives = 25/51 (49%)

Query: 52  APTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
           AP      AGT AP AA   APRG + P        +WR+  E G A G+P
Sbjct: 95  APVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSP 145


>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
           sapiens]
          Length = 238

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 21/51 (41%), Positives = 25/51 (49%)

Query: 52  APTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
           AP      AGT AP AA   APRG + P        +WR+  E G A G+P
Sbjct: 95  APVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSP 145


>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 261

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 39/110 (35%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 4   SGESLKGTGRR-EPRPRAKLPTCQVAGPCACL------RDRLGPPTQPRGFPGR-RAPTH 55
           SG +L G GRR    P    P    AG   CL      + R GP     G  G+ RAP  
Sbjct: 18  SGCNLVGAGRRCRAWPERAWPQ---AGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES 74

Query: 56  PTRPAGTTAPAAAAGAAPRGGAAPRAR--SAARRSWRAGLEQGRAAGTPP 103
             RPA    PA    +APRG   P  R  S+A R    G      AG  P
Sbjct: 75  NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAP 124


>gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 36/98 (36%), Positives = 40/98 (40%), Gaps = 25/98 (25%)

Query: 13  RREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPG--RRAPTHPTRPAGTTA------ 64
           R   RPR   P  Q +G         GPPT+P G  G  R  P  P +PA  TA      
Sbjct: 5   RHSKRPRFLAPN-QASG---------GPPTEP-GCSGVDREDPVDPVQPAKPTAYVKPMR 53

Query: 65  --PAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAG 100
             P A A  AP  G   R       SWRAG  +G  AG
Sbjct: 54  REPPARAQPAPPAGRGQRGGG----SWRAGRGRGSGAG 87


>gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens]
          Length = 210

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 36/98 (36%), Positives = 40/98 (40%), Gaps = 25/98 (25%)

Query: 13  RREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPG--RRAPTHPTRPAGTTA------ 64
           R   RPR   P  Q +G         GPPT+P G  G  R  P  P +PA  TA      
Sbjct: 5   RHSKRPRFLAPN-QASG---------GPPTEP-GCSGVDREDPVDPVQPAKPTAYVKPMR 53

Query: 65  --PAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAG 100
             P A A  AP  G   R       SWRAG  +G  AG
Sbjct: 54  REPPARAQPAPPAGRGQRGGG----SWRAGRGRGSGAG 87


>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
          Length = 364

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 39/110 (35%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 4   SGESLKGTGRR-EPRPRAKLPTCQVAGPCACL------RDRLGPPTQPRGFPGR-RAPTH 55
           SG +L G GRR    P    P    AG   CL      + R GP     G  G+ RAP  
Sbjct: 121 SGCNLVGAGRRCRAWPERAWPQ---AGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES 177

Query: 56  PTRPAGTTAPAAAAGAAPRGGAAPRAR--SAARRSWRAGLEQGRAAGTPP 103
             RPA    PA    +APRG   P  R  S+A R    G      AG  P
Sbjct: 178 NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAP 227


>gi|239752280 PREDICTED: similar to family with sequence similarity
           48, member B2 [Homo sapiens]
          Length = 779

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 7   SLKGTGRREPRPRAKLPTC--QVAGPCACLRDRLGPPTQPRGFPGRR------APTHPTR 58
           S+ G G + P PR +LP+   +++   +    + G P + R FP         AP     
Sbjct: 414 SVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLK-RPFPAAAPAVAAAAPAPAPA 472

Query: 59  PAGTTAPAAAAGAAPRGGAAP 79
           PA   A AAAA AA  GGAAP
Sbjct: 473 PAAAPALAAAAVAAAAGGAAP 493


>gi|210032463 family with sequence similarity 48, member B2 [Homo
           sapiens]
          Length = 817

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 9/81 (11%)

Query: 7   SLKGTGRREPRPRAKLPTC--QVAGPCACLRDRLGPPTQPRGFPGRR------APTHPTR 58
           S+ G G + P PR +LP+   +++   +    + G P + R FP         AP     
Sbjct: 452 SVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLK-RPFPAAAPAVAAAAPAPAPA 510

Query: 59  PAGTTAPAAAAGAAPRGGAAP 79
           PA   A AAAA AA  GGAAP
Sbjct: 511 PAAAPALAAAAVAAAAGGAAP 531


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 34/100 (34%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 14  REPR--PRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGA 71
           R PR  P   LP   +AGP    R RL   ++P        P     PA +T PA+++  
Sbjct: 788 RAPRTSPYGGLPAAPLAGPALPAR-RLSRASRPLSASQPSLPHGAPGPAASTRPASSS-- 844

Query: 72  APRGGAAPRARSAA-RRSWRAGLEQGRAAGTPPSRSYAQR 110
            PR G  P AR+AA     R     G A G  P  S   R
Sbjct: 845 TPRLGPTPAARAAAPSPDRRDSASPGAAGGLDPQDSARSR 884



 Score = 30.8 bits (68), Expect = 0.25
 Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 40 PPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAAR 86
          PP  P G PG   P HP R A    P AA    PRG    R  S  R
Sbjct: 40 PPAPPPG-PGPAPPQHPPR-AEALPPEAADEGGPRGRLRSRDSSCGR 84



 Score = 29.6 bits (65), Expect = 0.55
 Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 15/79 (18%)

Query: 40  PPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQ---- 95
           PP  P G     AP  P  P   T+P     AAP  G A  AR  +R S      Q    
Sbjct: 776 PPASPPG-----APASPRAPR--TSPYGGLPAAPLAGPALPARRLSRASRPLSASQPSLP 828

Query: 96  ----GRAAGTPPSRSYAQR 110
               G AA T P+ S   R
Sbjct: 829 HGAPGPAASTRPASSSTPR 847


>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 381

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 37  RLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGG---AAPRARSAARRSWRAGL 93
           R    T+P+  P   +P  P        PA  +   PR     A PR   AARR   A  
Sbjct: 278 RAATTTRPQTTPAAASPDLPQ-------PAERSRGEPRPAEPRAPPRPPPAARRPPPATA 330

Query: 94  EQGRAAGTPPSRSYAQRPERVAKR 117
              R AG+PP+R    RP R A R
Sbjct: 331 PSPRRAGSPPTREEEPRPRRSAAR 354



 Score = 30.0 bits (66), Expect = 0.42
 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 9   KGTGRREP--RPRAKLPTCQVAGPCACLRDRLGP-PTQPRGFPGRRAPTHPTRPAGTTAP 65
           +G+GR     RP+          P    R R  P P +PR  P  R P    RP   TAP
Sbjct: 274 RGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPP--RPPPAARRPPPATAP 331

Query: 66  AAA-AGAAPRGGAAPRARSAARR 87
           +   AG+ P     PR R +A R
Sbjct: 332 SPRRAGSPPTREEEPRPRRSAAR 354


>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
          Length = 379

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 34/98 (34%), Positives = 40/98 (40%), Gaps = 3/98 (3%)

Query: 14  REPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAP 73
           R P P A L T + AGP    R  L  P QP    G   P  P  PA + + A+ A AAP
Sbjct: 181 RPPSPPAGLST-EPAGPGTAPRPFL--PGQPAEVDGNPPPAAPEAPAASPSTASPAPAAP 237

Query: 74  RGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRP 111
                       RRS      +G A  TP  R   +RP
Sbjct: 238 GDLRQEHFDRLIRRSKLWCYAKGFALDTPSLRRGPERP 275



 Score = 28.9 bits (63), Expect = 0.94
 Identities = 18/51 (35%), Positives = 19/51 (37%)

Query: 33 CLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARS 83
          C   RL  P  PRG P    P  P R     +P      A    A PRA S
Sbjct: 5  CPAPRLAVPASPRGSPCSPTPRKPCRGTQEFSPLCLRALAFCALAKPRASS 55


>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 737

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 23/117 (19%)

Query: 9   KGTGRREPRPRAKL--PTCQVAGPCACLRDRLGPPTQ---------------------PR 45
           +G+GRR P P  +   P C+++ P   L      P                       PR
Sbjct: 517 QGSGRRRPGPDPQELDPHCKLSFPRLPLTPTESQPPSHNLFVEELRGARAALARGWMLPR 576

Query: 46  GFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
               +  P  P    G+ APAAA+G+      + RA   A    RA L +G  AG P
Sbjct: 577 ALRRQLCPIDPRARPGSVAPAAASGSIESSSLSGRAARLALGKHRACLRRGTEAGRP 633


>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 737

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 23/117 (19%)

Query: 9   KGTGRREPRPRAKL--PTCQVAGPCACLRDRLGPPTQ---------------------PR 45
           +G+GRR P P  +   P C+++ P   L      P                       PR
Sbjct: 517 QGSGRRRPGPDPQELDPHCKLSFPRLPLTPTESQPPSHNLFVEELRGARAALARGWMLPR 576

Query: 46  GFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
               +  P  P    G+ APAAA+G+      + RA   A    RA L +G  AG P
Sbjct: 577 ALRRQLCPIDPRARPGSVAPAAASGSIESSSLSGRAARLALGKHRACLRRGTEAGRP 633


>gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]
          Length = 644

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 32/87 (36%), Positives = 36/87 (41%), Gaps = 17/87 (19%)

Query: 40  PPTQ----PRGFPGRRAP----THPTRPAGTTAPAAAAGAAPRGGAAPRARSA------- 84
           PP Q    P   PG  +P    + P  P+G   PA AA  APR  A PR   A       
Sbjct: 31  PPAQRAGSPPDAPGSESPALACSTPATPSGEDPPARAAPIAPRPPARPRLERALSLDDKG 90

Query: 85  -ARRSWRAGLEQGRAA-GTPPSRSYAQ 109
             RR +R   E   A  GT PSR   Q
Sbjct: 91  WRRRRFRGSQEDLEARNGTSPSRGSVQ 117


>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
          Length = 2303

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 4    SGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRL-------GPPTQPRGFPGRRAPTHP 56
            SG      G  +PR   K       G  A LR R         P  QP+G PG RA    
Sbjct: 1762 SGSPRSPAGPEKPRGTQKT----TPGVPAVLRGRTVIYVPSPAPRAQPKGTPGPRATPRK 1817

Query: 57   TRPAGTTAPAAAAGAAPRGGAAPRA-RSAARRSWRAGLEQGRAAGTPPSR 105
              P     PAA A     G    R+    A+ S  A L Q   + TPP+R
Sbjct: 1818 VAPPCLAQPAAPAKVPSPGQQRSRSLHRPAKTSELATLSQPPRSATPPAR 1867



 Score = 30.4 bits (67), Expect = 0.32
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 16/96 (16%)

Query: 18   PRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGA 77
            PR+  P  ++A   +    +  P +QP   P +R P              AAGA P  GA
Sbjct: 1859 PRSATPPARLAKTPSSSSSQTSPASQP--LPRKRPPV-----------TQAAGALPGPGA 1905

Query: 78   APRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPER 113
            +P  ++ AR       +Q +   +P    + QRP R
Sbjct: 1906 SPVPKTPARTLL---AKQHKTQRSPVRIPFMQRPAR 1938



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 51   RAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAG---TPPSRSY 107
            R+P  P +P GT        A  RG       S A R+   G    RA      PP  + 
Sbjct: 1766 RSPAGPEKPRGTQKTTPGVPAVLRGRTVIYVPSPAPRAQPKGTPGPRATPRKVAPPCLAQ 1825

Query: 108  AQRPERVAKRG 118
               P +V   G
Sbjct: 1826 PAAPAKVPSPG 1836


>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
          Length = 237

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 6   ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
           E+  G+  R P PR   P   +A P   L    G   +      RR P  P+RPA    P
Sbjct: 55  EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 109

Query: 66  AAAAGAAPRGGAAPRARSAARRSWRAG 92
            A   A PRGG A RA     R+  AG
Sbjct: 110 PAPPSALPRGGRAARAGGPGSRARAAG 136


>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 6   ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
           E+  G+  R P PR   P   +A P   L    G   +      RR P  P+RPA    P
Sbjct: 38  EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 92

Query: 66  AAAAGAAPRGGAAPRARSAARRSWRAG 92
            A   A PRGG A RA     R+  AG
Sbjct: 93  PAPPSALPRGGRAARAGGPGSRARAAG 119


>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 6   ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
           E+  G+  R P PR   P   +A P   L    G   +      RR P  P+RPA    P
Sbjct: 46  EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 100

Query: 66  AAAAGAAPRGGAAPRARSAARRSWRAG 92
            A   A PRGG A RA     R+  AG
Sbjct: 101 PAPPSALPRGGRAARAGGPGSRARAAG 127


>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 6   ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
           E+  G+  R P PR   P   +A P   L    G   +      RR P  P+RPA    P
Sbjct: 38  EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 92

Query: 66  AAAAGAAPRGGAAPRARSAARRSWRAG 92
            A   A PRGG A RA     R+  AG
Sbjct: 93  PAPPSALPRGGRAARAGGPGSRARAAG 119


>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 6   ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
           E+  G+  R P PR   P   +A P   L    G   +      RR P  P+RPA    P
Sbjct: 46  EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 100

Query: 66  AAAAGAAPRGGAAPRARSAARRSWRAG 92
            A   A PRGG A RA     R+  AG
Sbjct: 101 PAPPSALPRGGRAARAGGPGSRARAAG 127


>gi|32401437 H1 histone family, member N, testis-specific [Homo
           sapiens]
          Length = 255

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 6   ESLKGTGRRE-PRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTA 64
           E  + +GR E PR +AK    +V+G  A    R+    +PR  PGR      TR    T 
Sbjct: 89  EVRRKSGRHEAPRGQAKATLLRVSGSDAAGYFRVWKVPKPRRKPGRARQEEGTRAPWRT- 147

Query: 65  PAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRP 111
           PAA   +  R     +A   AR  WR        A     R+   RP
Sbjct: 148 PAAPRSSRRRRQPLRKAARKAREVWRRNARAKAKANARARRTRRARP 194


>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
          Length = 257

 Score = 36.6 bits (83), Expect = 0.005
 Identities = 29/85 (34%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 23  PTCQVAGPCACLRDR---LGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAP 79
           PT   AGP AC+R      G  T     P    P  P  PA    P   AG AP   +  
Sbjct: 83  PTASAAGPGACMRASGRPHGNTTASTAPPRHPRPRRPGGPALRPTPRPCAGPAPPPASRD 142

Query: 80  RARSAARRSWRAGLEQGRAAGTPPS 104
                 RR  RAG    RA    PS
Sbjct: 143 CRCRRPRRWPRAGRRGRRAGACKPS 167



 Score = 26.9 bits (58), Expect = 3.6
 Identities = 31/93 (33%), Positives = 34/93 (36%), Gaps = 21/93 (22%)

Query: 13  RREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAA 72
           R  PRP A       +  C C R R  P    RG           R AG   P+ A    
Sbjct: 125 RPTPRPCAGPAPPPASRDCRCRRPRRWPRAGRRG-----------RRAGACKPSCA---- 169

Query: 73  PRGGAAPRARSAARRSWR---AGLEQGRAAGTP 102
              GAA  AR A   S+R   AG    R A TP
Sbjct: 170 ---GAAWSARGAPLCSYRTSCAGSCGARTAPTP 199



 Score = 26.6 bits (57), Expect = 4.7
 Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 16  PRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRG 75
           P P    P+   +  C   R    P T   G  G          AG TA  AA    PR 
Sbjct: 199 PAPTCASPSAAASSCCRRRRACSSPTTAWSGACG----------AGPTAATAAQPGKPRS 248

Query: 76  GAAP-RARS 83
            AAP RAR+
Sbjct: 249 AAAPGRARA 257


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 29  GPCACLRDR-----LGP--PTQPRGFPGRRAPTHPTRPAGTTAPAAAAG----AAPRGGA 77
           GP     DR      GP  P  PRG PG R    P  P G   PA AAG       RG  
Sbjct: 685 GPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAK 744

Query: 78  APRARS 83
            P+  +
Sbjct: 745 GPKGEN 750



 Score = 31.2 bits (69), Expect = 0.19
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 29  GPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAA-------PRGGAAPRA 81
           GP     D  G P    GFPG    T P  P+G + P    G A       PRG   P  
Sbjct: 772 GPAGSRGD--GGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVG 829

Query: 82  RS 83
           R+
Sbjct: 830 RT 831



 Score = 28.9 bits (63), Expect = 0.94
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 41   PTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPR 80
            P  P G  G R  T P+ P G   PA A G  PRG + P+
Sbjct: 968  PVGPAGKHGNRGETGPSGPVG---PAGAVG--PRGPSGPQ 1002



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 41  PTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGG--AAPRARSAARRSWRAGLEQGR- 97
           P   RG PG      PT P G+  P+   G     G      A   A  S  +GL   R 
Sbjct: 587 PRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERG 646

Query: 98  AAGTPPSRSYAQRPERVAKRGN 119
           AAG P  +     P    + GN
Sbjct: 647 AAGIPGGKGEKGEPGLRGEIGN 668



 Score = 27.7 bits (60), Expect = 2.1
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 34  LRDRLGPPTQP--RGFPGRRAPTHPTRPAGTTAPAAAAGAA-PRGGAAPRARSAAR 86
           LR  +G P +   RG PG         PAG T     AGAA P G A PR     R
Sbjct: 662 LRGEIGNPGRDGARGAPGA---VGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGER 714



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 46  GFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAAR-RSWRAGLEQGRAAGTPP 103
           GFPG + PT      G    A  AGA  RG   P   + A+      G++ G+    PP
Sbjct: 493 GFPGPKGPTGDPGKNGDKGHAGLAGA--RGAPGPDGNNGAQGPPGPQGVQGGKGEQGPP 549



 Score = 26.9 bits (58), Expect = 3.6
 Identities = 15/40 (37%), Positives = 16/40 (40%)

Query: 41  PTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPR 80
           PT P G  G   P  P  PAG+       G     GAA R
Sbjct: 755 PTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGR 794



 Score = 26.6 bits (57), Expect = 4.7
 Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 44  PRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRG 75
           P GFPG   P       G   PA  AG  PRG
Sbjct: 254 PPGFPGAPGPKGEIGAVGNAGPAGPAG--PRG 283



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 11/66 (16%)

Query: 16  PRPRAKLPTCQVAGPCACLRDRLGPPTQPRG---FPGRRAPTHPTRPAGTTAPAAAAGAA 72
           P P+ ++     AGP          P  PRG    PG   P  P    G      A GAA
Sbjct: 261 PGPKGEIGAVGNAGPAG--------PAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAA 312

Query: 73  PRGGAA 78
              G A
Sbjct: 313 GLPGVA 318



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 35 RDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAG 70
          R   GPP  P G  G   PT P  P G   P    G
Sbjct: 41 RGERGPPGPP-GRDGEDGPTGPPGPPGPPGPPGLGG 75



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 45   RGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGG 76
            +G PG   P  P  PAG + PA   G     G
Sbjct: 1041 QGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPG 1072


>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
          Length = 394

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 4   SGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGP----PTQPRGFP-GRRAPTHPTR 58
           SG+ L+  GRR  RP    P  ++  P A  R R GP    P+ P G P G      P R
Sbjct: 139 SGDVLRRAGRRRARPP---PVPRLPAPRAPRRPR-GPATPDPSPPAGRPHGPAGRAAPGR 194

Query: 59  PAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAA 99
             G TA   A G   R           RR W+      RAA
Sbjct: 195 RPGCTAQLRAPGRRGRQRLLVHPGGGGRRQWQRLARARRAA 235


>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 301

 Score = 35.8 bits (81), Expect = 0.008
 Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 40  PPTQPRGFPGR---RAPTHPTRPA--GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLE 94
           PP++ RG PGR   R+ +HPT+ A      PA A   A R G A    + AR   RA   
Sbjct: 35  PPSRARGPPGRPSLRSDSHPTQRARRAGEGPARARLEAERAGCAHGPGAPART--RAHAH 92

Query: 95  QGRAAG 100
           +GR AG
Sbjct: 93  KGRGAG 98



 Score = 26.2 bits (56), Expect = 6.1
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 51  RAPTHPTRPAGTTAPAAAAGAAPR--GGAAPRARSA-ARRSWRA---GLEQGRAAGTPPS 104
           RAPT      G  APA  A AAPR  GG A   R A ++ SW     G+    +   P S
Sbjct: 135 RAPT--ASRTGPGAPAEGARAAPREGGGEAVAERCARSQPSWEGELWGVRHLVSLSLPAS 192

Query: 105 RSYAQRPERVAKRG 118
                 P    +RG
Sbjct: 193 SGACAPPPLPPRRG 206


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.132    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,544,962
Number of Sequences: 37866
Number of extensions: 422380
Number of successful extensions: 6331
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 786
Number of HSP's that attempted gapping in prelim test: 4052
Number of HSP's gapped (non-prelim): 2742
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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