Guide to the Human Genome
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Search of human proteins with 169162343

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169162343 PREDICTED: hypothetical protein [Homo sapiens]
         (189 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169162343 PREDICTED: hypothetical protein [Homo sapiens]           380   e-106
gi|113411617 PREDICTED: hypothetical protein [Homo sapiens]           380   e-106
gi|239747570 PREDICTED: hypothetical protein [Homo sapiens]           103   7e-23
gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo ...    46   2e-05
gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo ...    46   2e-05
gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]            45   3e-05
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]            45   5e-05
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]            45   5e-05
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]            45   5e-05
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]            40   0.001
gi|18959210 WIRE protein [Homo sapiens]                                40   0.001
gi|169201198 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169188531 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|239755684 PREDICTED: hypothetical protein [Homo sapiens]            38   0.005
gi|239750147 PREDICTED: hypothetical protein [Homo sapiens]            38   0.005
gi|239744457 PREDICTED: hypothetical protein [Homo sapiens]            38   0.005
gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens]            38   0.006
gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens]            38   0.006
gi|5031975 p21-activated kinase 4 isoform 1 [Homo sapiens]             38   0.006
gi|169213703 PREDICTED: hypothetical protein [Homo sapiens]            36   0.017
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ...    36   0.017
gi|31324577 molecule interacting with Rab13 [Homo sapiens]             36   0.017
gi|197276594 RNA binding motif protein 20 [Homo sapiens]               36   0.023
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora...    35   0.029
gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo ...    35   0.050
gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo ...    35   0.050
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]            34   0.066
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]              34   0.066
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]              34   0.066
gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo ...    34   0.066

>gi|169162343 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 189

 Score =  380 bits (975), Expect = e-106
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAG 60
           MASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAG
Sbjct: 1   MASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAG 60

Query: 61  SGRASRRRAVRRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFA 120
           SGRASRRRAVRRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFA
Sbjct: 61  SGRASRRRAVRRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFA 120

Query: 121 ASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAERAREARSEQPTSPGTRH 180
           ASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAERAREARSEQPTSPGTRH
Sbjct: 121 ASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAERAREARSEQPTSPGTRH 180

Query: 181 VGCCSRASS 189
           VGCCSRASS
Sbjct: 181 VGCCSRASS 189


>gi|113411617 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 189

 Score =  380 bits (975), Expect = e-106
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAG 60
           MASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAG
Sbjct: 1   MASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAG 60

Query: 61  SGRASRRRAVRRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFA 120
           SGRASRRRAVRRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFA
Sbjct: 61  SGRASRRRAVRRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFA 120

Query: 121 ASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAERAREARSEQPTSPGTRH 180
           ASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAERAREARSEQPTSPGTRH
Sbjct: 121 ASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAERAREARSEQPTSPGTRH 180

Query: 181 VGCCSRASS 189
           VGCCSRASS
Sbjct: 181 VGCCSRASS 189


>gi|239747570 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 128

 Score =  103 bits (258), Expect = 7e-23
 Identities = 59/72 (81%), Positives = 60/72 (83%), Gaps = 4/72 (5%)

Query: 1  MASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAG-CLPVQA 59
          MASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLE   G CL  Q 
Sbjct: 1  MASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLERRPGACLSRQ- 59

Query: 60 GSGRASRRRAVR 71
            G A RR AV+
Sbjct: 60 --GLAERRVAVQ 69


>gi|239751605 PREDICTED: hypothetical protein XP_002347934 [Homo
           sapiens]
          Length = 208

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 13  RGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSGRASRRRAV-- 70
           R   +R+  G GE   GP +S RPA R  A +  R  PA+   P +  +  A   R +  
Sbjct: 60  RAHTRRKALGPGER--GPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPT 117

Query: 71  --RRVSGRWLPLSRPLLPL-LSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAASPSAPW 127
             RR S    P+S P  PL  S PG P+++  R    +       + VLA   A P++P 
Sbjct: 118 NGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSP- 176

Query: 128 SLGSVRSLERGAAREQAACG 147
               V +  RGA RE+++ G
Sbjct: 177 --RLVSAWSRGARRERSSRG 194


>gi|239746122 PREDICTED: hypothetical protein XP_002344202 [Homo
           sapiens]
          Length = 208

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 13  RGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSGRASRRRAV-- 70
           R   +R+  G GE   GP +S RPA R  A +  R  PA+   P +  +  A   R +  
Sbjct: 60  RAHTRRKALGPGER--GPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPT 117

Query: 71  --RRVSGRWLPLSRPLLPL-LSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAASPSAPW 127
             RR S    P+S P  PL  S PG P+++  R    +       + VLA   A P++P 
Sbjct: 118 NGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRQVLATGPAQPTSP- 176

Query: 128 SLGSVRSLERGAAREQAACG 147
               V +  RGA RE+++ G
Sbjct: 177 --RLVSAWSRGARRERSSRG 194


>gi|239757099 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 13  RGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSGRASRRRAV-- 70
           R   +R+  G GE   GP +S RPA R  A +  R  PA+   P +  +  A   R +  
Sbjct: 60  RAHTRRKALGPGER--GPEASPRPAPRARAHAHSRRLPASPTGPPETRARLAWAPRFLPT 117

Query: 71  --RRVSGRWLPLSRPLLPL-LSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAASPSAPW 127
             RR S    P+S P  PL  S PG P+++  R    +       + VLA   A P++P 
Sbjct: 118 NGRRPSPPRPPMSAPTPPLGKSEPGEPETSGPRAYLRDPGASAALRKVLATGPAQPTSP- 176

Query: 128 SLGSVRSLERGAAREQAACG 147
               V +  RGA RE+++ G
Sbjct: 177 --RLVFAWSRGARRERSSRG 194


>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 371

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 61/186 (32%), Positives = 70/186 (37%), Gaps = 33/186 (17%)

Query: 2   ASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLE------PAAGCL 55
           A G   GGE R G + R GK      G P S+ RP    A  + LR E      P     
Sbjct: 100 ARGQTTGGEGREGAQTREGK-----MGLPDSARRPR---APRTPLRPERPAPGVPGGRVA 151

Query: 56  PVQAGSGRASRRRAVRRVSGRWLPLS-RPLLPLLSHPGWPDSAS-----SRTLSAESTPP 109
           P    SG  S R    RVSGR  P    P   LL +   P  AS     + TL+ E    
Sbjct: 152 PCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARR 211

Query: 110 HPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQAACGRP---APLALVQEA---PGAAE 163
                  AP       P +L   RS  R A     A GR      LAL +E+    GA E
Sbjct: 212 RARSATQAP-------PLALVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARE 264

Query: 164 RAREAR 169
           R R  R
Sbjct: 265 RGRAGR 270


>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 371

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 61/186 (32%), Positives = 70/186 (37%), Gaps = 33/186 (17%)

Query: 2   ASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLE------PAAGCL 55
           A G   GGE R G + R GK      G P S+ RP    A  + LR E      P     
Sbjct: 100 ARGQTTGGEGREGAQTREGK-----MGLPDSARRPR---APRTPLRPERPAPGVPGGRVA 151

Query: 56  PVQAGSGRASRRRAVRRVSGRWLPLS-RPLLPLLSHPGWPDSAS-----SRTLSAESTPP 109
           P    SG  S R    RVSGR  P    P   LL +   P  AS     + TL+ E    
Sbjct: 152 PCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARR 211

Query: 110 HPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQAACGRP---APLALVQEA---PGAAE 163
                  AP       P +L   RS  R A     A GR      LAL +E+    GA E
Sbjct: 212 RARSATQAP-------PLALVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARE 264

Query: 164 RAREAR 169
           R R  R
Sbjct: 265 RGRAGR 270


>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 371

 Score = 44.7 bits (104), Expect = 5e-05
 Identities = 61/186 (32%), Positives = 70/186 (37%), Gaps = 33/186 (17%)

Query: 2   ASGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLE------PAAGCL 55
           A G   GGE R G + R GK      G P S+ RP    A  + LR E      P     
Sbjct: 100 ARGQTTGGEGREGAQTREGK-----MGLPDSARRPR---APRTPLRPERPAPGVPGGRVA 151

Query: 56  PVQAGSGRASRRRAVRRVSGRWLPLS-RPLLPLLSHPGWPDSAS-----SRTLSAESTPP 109
           P    SG  S R    RVSGR  P    P   LL +   P  AS     + TL+ E    
Sbjct: 152 PCTCTSGSPSPRPRRLRVSGRGSPAQLPPTYQLLGYHRAPPRASPGGWNTETLNTEDARR 211

Query: 110 HPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQAACGRP---APLALVQEA---PGAAE 163
                  AP       P +L   RS  R A     A GR      LAL +E+    GA E
Sbjct: 212 RARSATQAP-------PLALVPARSRARPAHLRVRAAGRSRHRVLLALSRESRHLSGARE 264

Query: 164 RAREAR 169
           R R  R
Sbjct: 265 RGRAGR 270


>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 52/173 (30%), Positives = 63/173 (36%), Gaps = 32/173 (18%)

Query: 11  RRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSA-LRLEPAAGCLPVQAGSGRASRRRA 69
           R R    RR    G A+G P    R     AA SA  R  PA    P   G+   +  RA
Sbjct: 110 RGRAAATRRSPAPGTARGSPAGVERAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRA 169

Query: 70  VRRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAASPSAP--W 127
           +RR     LP S               +SSR  +A   P  P           P AP  W
Sbjct: 170 LRRPGSAALPRS--------------PSSSRRWAAMPGPGAPR----------PGAPGTW 205

Query: 128 SLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAERAREARSEQPTSPGTRH 180
            +G   +    AA   A    P P A V  AP AA R   A  +   +PGT +
Sbjct: 206 PVGFAVAAPPAAAASVA----PPPPA-VAGAPAAAFRGWVAAPDPGCTPGTEN 253


>gi|18959210 WIRE protein [Homo sapiens]
          Length = 440

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 24  GEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSGRASRRRAVRRVSGRWLP-LSR 82
           G   G    + +PAL++ +  A    P     PV A SGR        R S   LP + R
Sbjct: 99  GAKDGSENLAGKPALQIPSSRAAAPRP-----PVSAASGRPQDDTDSSRASLPELPRMQR 153

Query: 83  PLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAP 118
           P LP LS P    S   +  S+   PP P +   AP
Sbjct: 154 PSLPDLSRPNTTSSTGMKHSSSAPPPPPPGRRANAP 189


>gi|169201198 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 105

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 96  SASSRTLSAESTPPHPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQAACGRPAPLALV 155
           S  SR LS    PP P  L+L P       P   G     ER      A    P PL L 
Sbjct: 7   SRRSRALSLPLPPPPPPPLLLEPLPLLEEPP---GLQHVSERAGPAAPAPSTHPTPLPLP 63

Query: 156 QEAPGAAERAREARSEQPTSPGTRH 180
           +  PGA+ +A  A   + T P   H
Sbjct: 64  KPTPGASRQAPAANPGKGTPPSGLH 88


>gi|169188531 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 105

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 28/85 (32%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 96  SASSRTLSAESTPPHPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQAACGRPAPLALV 155
           S  SR LS    PP P  L+L P       P   G     ER      A    P PL L 
Sbjct: 7   SRRSRALSLPLPPPPPPPLLLEPLPLLEEPP---GLQHVSERAGPAAPAPSTHPTPLPLP 63

Query: 156 QEAPGAAERAREARSEQPTSPGTRH 180
           +  PGA+ +A  A   + T P   H
Sbjct: 64  KPTPGASRQAPAANPGKGTPPSGLH 88


>gi|239755684 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 54/183 (29%), Positives = 72/183 (39%), Gaps = 34/183 (18%)

Query: 8   GGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPV-QAGSGRASR 66
           G  RR G  +RR     E+   P  S RP  RL+    L   PA  C+ V QA S  A  
Sbjct: 236 GSTRRSGYSRRR-----ESCAAPSPSHRPGARLSLSLCLLPHPACLCVSVPQAPSDSAGL 290

Query: 67  RRAV-RRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAES----TPPH----------- 110
            R++    +GR    +R L  L  HP  P  +  R   ++S     PP            
Sbjct: 291 SRSLPPPPAGRGGAGTRELRFLRFHPARPCKSPGRARHSDSRLSRAPPGAGTTRGTKRFP 350

Query: 111 ---PHKLVLAPFAAS-------PSAPWSLGSVR--SLERGAAREQAACGRPAPLALVQEA 158
              P +  LA  AA+       P+AP S G++R   + RG    + A  R    A    A
Sbjct: 351 LALPLRAALAAEAAAGIALRSQPAAPRSSGTMRGNQVPRGVELPEDAVTRGGVGAAAFRA 410

Query: 159 PGA 161
           P A
Sbjct: 411 PRA 413


>gi|239750147 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 415

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 54/183 (29%), Positives = 72/183 (39%), Gaps = 34/183 (18%)

Query: 8   GGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPV-QAGSGRASR 66
           G  RR G  +RR     E+   P  S RP  RL+    L   PA  C+ V QA S  A  
Sbjct: 236 GSTRRSGYSRRR-----ESCAAPSPSHRPGARLSLSLCLLPHPACLCVSVPQAPSDSAGL 290

Query: 67  RRAV-RRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAES----TPPH----------- 110
            R++    +GR    +R L  L  HP  P  +  R   ++S     PP            
Sbjct: 291 SRSLPPPPAGRGGAGTRELRFLRFHPARPCKSPGRARHSDSRLSRAPPGAGTTRGTKRFP 350

Query: 111 ---PHKLVLAPFAAS-------PSAPWSLGSVR--SLERGAAREQAACGRPAPLALVQEA 158
              P +  LA  AA+       P+AP S G++R   + RG    + A  R    A    A
Sbjct: 351 LALPLRAALAAEAAAGIALRSQPAAPRSSGTMRGNQVPRGVELPEDAVTRGGVGAAAFRA 410

Query: 159 PGA 161
           P A
Sbjct: 411 PRA 413


>gi|239744457 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 351

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 54/183 (29%), Positives = 72/183 (39%), Gaps = 34/183 (18%)

Query: 8   GGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPV-QAGSGRASR 66
           G  RR G  +RR     E+   P  S RP  RL+    L   PA  C+ V QA S  A  
Sbjct: 172 GSTRRSGYSRRR-----ESCAAPSPSHRPGARLSLSLCLLPHPACLCVSVPQAPSDSAGL 226

Query: 67  RRAV-RRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAES----TPPH----------- 110
            R++    +GR    +R L  L  HP  P  +  R   ++S     PP            
Sbjct: 227 SRSLPPPPAGRGGAGTRELRFLRFHPARPCKSPGRARHSDSRLSRAPPGAGTTRGTKRFP 286

Query: 111 ---PHKLVLAPFAAS-------PSAPWSLGSVR--SLERGAAREQAACGRPAPLALVQEA 158
              P +  LA  AA+       P+AP S G++R   + RG    + A  R    A    A
Sbjct: 287 LALPLRAALAAEAAAGIALRSQPAAPRSSGTMRGNQVPRGVELPEDAVTRGGVGAAAFRA 346

Query: 159 PGA 161
           P A
Sbjct: 347 PRA 349


>gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens]
          Length = 591

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 41/139 (29%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 3   SGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSG 62
           +G G G  RR G EKR    R E  GGP  SSR    L+       +PA      +  +G
Sbjct: 144 AGGGSGDRRRAGPEKRPKSSR-EGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAG 202

Query: 63  -------RASRRRAVRRVSG--RWLPLSRPLLPLLSHPGWPDSASSRTLSAESTP----- 108
                  RA      R   G    +  + P    L+ P    S+S     A   P     
Sbjct: 203 RPFNTYPRADTDHPSRGAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPSPGVL 262

Query: 109 -PHPHKLVLAPFAASPSAP 126
            PH  +  LAP A +P+AP
Sbjct: 263 GPHASEPQLAPPACTPAAP 281


>gi|62422557 p21-activated kinase 4 isoform 1 [Homo sapiens]
          Length = 591

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 41/139 (29%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 3   SGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSG 62
           +G G G  RR G EKR    R E  GGP  SSR    L+       +PA      +  +G
Sbjct: 144 AGGGSGDRRRAGPEKRPKSSR-EGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAG 202

Query: 63  -------RASRRRAVRRVSG--RWLPLSRPLLPLLSHPGWPDSASSRTLSAESTP----- 108
                  RA      R   G    +  + P    L+ P    S+S     A   P     
Sbjct: 203 RPFNTYPRADTDHPSRGAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPSPGVL 262

Query: 109 -PHPHKLVLAPFAASPSAP 126
            PH  +  LAP A +P+AP
Sbjct: 263 GPHASEPQLAPPACTPAAP 281


>gi|5031975 p21-activated kinase 4 isoform 1 [Homo sapiens]
          Length = 591

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 41/139 (29%), Positives = 53/139 (38%), Gaps = 16/139 (11%)

Query: 3   SGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSG 62
           +G G G  RR G EKR    R E  GGP  SSR    L+       +PA      +  +G
Sbjct: 144 AGGGSGDRRRAGPEKRPKSSR-EGSGGPQESSRDKRPLSGPDVGTPQPAGLASGAKLAAG 202

Query: 63  -------RASRRRAVRRVSG--RWLPLSRPLLPLLSHPGWPDSASSRTLSAESTP----- 108
                  RA      R   G    +  + P    L+ P    S+S     A   P     
Sbjct: 203 RPFNTYPRADTDHPSRGAQGEPHDVAPNGPSAGGLAIPQSSSSSSRPPTRARGAPSPGVL 262

Query: 109 -PHPHKLVLAPFAASPSAP 126
            PH  +  LAP A +P+AP
Sbjct: 263 GPHASEPQLAPPACTPAAP 281


>gi|169213703 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 319

 Score = 36.2 bits (82), Expect = 0.017
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 91  PGWPDSASSRTLSAE-STPPHPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQA----- 144
           P  P   S+  LSA+  +P  PH     PFA S   P +LG+  +  R ++   A     
Sbjct: 94  PSTPHLLSASALSAQLDSPARPHPRCYPPFALSAPRPPALGASATAFRSSSDPPARPRLF 153

Query: 145 --ACGRPAPLALVQEAPGAAERAREARSEQPTSPGTRHVGCCSRASS 189
             A   PA L L      A+  + + R   P+SPG     C S + S
Sbjct: 154 RRASASPAQLRLPSRL--ASALSAQLRLPHPSSPGVLPWRCLSLSVS 198


>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
           sapiens]
          Length = 935

 Score = 36.2 bits (82), Expect = 0.017
 Identities = 49/169 (28%), Positives = 61/169 (36%), Gaps = 15/169 (8%)

Query: 14  GEEKRRGKGRGEAKGGPGSSSRPA--LRLAADSALRLEPAAGCLPVQAGSGRASRRRAVR 71
           GE + R +G G+   G GS +  A   R A D+  R          + G  R +  R VR
Sbjct: 756 GESRDRARGAGQPGPGSGSGAERAGPERRARDTQTRTRRDKLTDSARGGRARLTAGRRVR 815

Query: 72  RVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAASPSAPWSLGS 131
           R SGR    +       +  G    A+SR    ES  P P      P   SP+A  S   
Sbjct: 816 RESGRRRAGA-------TSQGAIRRAASRARKGESRRPLPANSAGRPALPSPAAARSARG 868

Query: 132 VRSLERGAAREQAACGRPAPLALVQEAPGAAERAREARSEQPTSPGTRH 180
              L   A+R   A  R  P    Q  P  A R R         PG  H
Sbjct: 869 SWGLR--ASRPSRAAPRGPP--NFQRCP--APRPRRRLGVSIVGPGRAH 911


>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
          Length = 863

 Score = 36.2 bits (82), Expect = 0.017
 Identities = 47/177 (26%), Positives = 63/177 (35%), Gaps = 23/177 (12%)

Query: 15  EEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSGRASRRRAVRRVS 74
           EE+   K   EA   P  ++ PAL     +   L P  G  P    S +  +R A R  S
Sbjct: 428 EEEEEDKEE-EAPAAPSLATSPALGHPESTPKSLHPWYGITPTS--SPKTKKRPAPRAPS 484

Query: 75  GRWLPLSRPLLPLLSHPGWPDSASSRTLSAEST---------------PPHPHKLVLAPF 119
              L L    L   SH   P +  S  LS ES                PP   K    P 
Sbjct: 485 ASPLALHASRL---SHSEPPSATPSPALSVESLSSESASQTAGAELLEPPAVPKSSSEPA 541

Query: 120 AASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAERAREARSEQPTSP 176
             +P  P +  S+ +    A+  +     P    + Q +PG A R R +   QP  P
Sbjct: 542 VHAPGTPGNPVSLSTNSSLASSGELV--EPRVEQMPQASPGLAPRTRGSSGPQPAKP 596


>gi|197276594 RNA binding motif protein 20 [Homo sapiens]
          Length = 1227

 Score = 35.8 bits (81), Expect = 0.023
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 105 ESTPPHPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQAACGRPAPLALVQEAPGAAER 164
           E   PH  K    P + SP+ P S+ S +S E G  R++        L   Q+APG + R
Sbjct: 728 EGGRPHREKY---PRSGSPNLPHSVSSYKSREDGYYRKEPKAKWDKYLKQQQDAPGRSRR 784

Query: 165 AREARSEQPTSP 176
             EAR  +   P
Sbjct: 785 KDEARLRESRHP 796


>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 6 [Homo sapiens]
          Length = 1093

 Score = 35.4 bits (80), Expect = 0.029
 Identities = 25/74 (33%), Positives = 33/74 (44%)

Query: 12  RRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSGRASRRRAVR 71
           R G  + +G    E  GGP + S P+ +LA  +A    P +G   V +G G  S R    
Sbjct: 475 RHGPGRPKGSRNKEGTGGPAAPSLPSAQLAGFTATAASPFSGGSLVSSGLGGLSSRTFGP 534

Query: 72  RVSGRWLPLSRPLL 85
             S   L L  PLL
Sbjct: 535 SGSLPSLSLESPLL 548


>gi|239752392 PREDICTED: hypothetical protein XP_002348220 [Homo
           sapiens]
          Length = 189

 Score = 34.7 bits (78), Expect = 0.050
 Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 3   SGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQA-GS 61
           +GA      ++G       GRG A+GG    SR   R     A   E      P +    
Sbjct: 52  AGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPA---EAGLSASPEKTRPE 108

Query: 62  GRASRRRAV--RRVSGRWLPLSRPL-LPLLSHPGWPDSASSRT 101
           GRA R RAV  +    RWL  +RP   P  + PG      SRT
Sbjct: 109 GRAERGRAVVWQSQPNRWLQTARPTHAPAPARPGRQSKRRSRT 151


>gi|239746909 PREDICTED: hypothetical protein XP_002343871 [Homo
           sapiens]
          Length = 189

 Score = 34.7 bits (78), Expect = 0.050
 Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 7/103 (6%)

Query: 3   SGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQA-GS 61
           +GA      ++G       GRG A+GG    SR   R     A   E      P +    
Sbjct: 52  AGAWHSESSQKGTACPLALGRGGARGGGQRKSRSGARAPGQPA---EAGLSASPEKTRPE 108

Query: 62  GRASRRRAV--RRVSGRWLPLSRPL-LPLLSHPGWPDSASSRT 101
           GRA R RAV  +    RWL  +RP   P  + PG      SRT
Sbjct: 109 GRAERGRAVVWQSQPNRWLQTARPTHAPAPARPGRQSKRRSRT 151


>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 294

 Score = 34.3 bits (77), Expect = 0.066
 Identities = 49/165 (29%), Positives = 64/165 (38%), Gaps = 28/165 (16%)

Query: 3   SGAGVGGERRRGEEKRRGKGRGEAKGGPGSSSRPALRLAADSALRLEPAAGCLPVQAGSG 62
           +G G  G   RG E+RRG    +   GP + +R   R A  SA   +PA+G     A   
Sbjct: 78  AGCGAHGPGSRGRERRRGSR--DPPAGPVARARARGRSAPGSA---QPASG-----AAGP 127

Query: 63  RASRRRAVRRVSGRWLPLSRPLLPLLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAAS 122
            A+   A        LP SR    L S P  P       + A + P  P  L +AP  A 
Sbjct: 128 AAAPEAAPPAWDPATLPPSRKRNSLGSSPLHP--VRLGRVRAHAGPAGPSILRVAPHPAL 185

Query: 123 PSAP--------WSLGSVRSLER-----GAAREQAACGR---PAP 151
           P A         W+    +SL+      G  R   + GR   PAP
Sbjct: 186 PGAQVHWAGRHRWAARRGKSLQSAWWGPGGRRNSISPGRTTFPAP 230


>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2852

 Score = 34.3 bits (77), Expect = 0.066
 Identities = 42/165 (25%), Positives = 58/165 (35%), Gaps = 20/165 (12%)

Query: 30   PGSSSRPALRLAADSALRLEPAAGCL---PVQAGSGRASRRRAVRRVSGRWLPLSRPLLP 86
            P  ++ P   L A  + R   + G +   P  +GS +A    AV +V             
Sbjct: 1568 PVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKV------------- 1614

Query: 87   LLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQAAC 146
             +S  G P    +++ S+ STP             SP A  SL  V S E+G A      
Sbjct: 1615 -ISRTGVPQPTQAQSASSPSTPLTVAGTAAEQVPVSPLATRSLEIVLSTEKGEAGHSQPM 1673

Query: 147  GRPA---PLALVQEAPGAAERAREARSEQPTSPGTRHVGCCSRAS 188
            G PA   P  L    P  A+    A       P T      S A+
Sbjct: 1674 GSPASPQPHPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTAT 1718


>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2924

 Score = 34.3 bits (77), Expect = 0.066
 Identities = 42/165 (25%), Positives = 58/165 (35%), Gaps = 20/165 (12%)

Query: 30   PGSSSRPALRLAADSALRLEPAAGCL---PVQAGSGRASRRRAVRRVSGRWLPLSRPLLP 86
            P  ++ P   L A  + R   + G +   P  +GS +A    AV +V             
Sbjct: 1640 PVRTTPPQPSLTASPSSRPVASPGAISRSPTSSGSHKAVLTPAVTKV------------- 1686

Query: 87   LLSHPGWPDSASSRTLSAESTPPHPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQAAC 146
             +S  G P    +++ S+ STP             SP A  SL  V S E+G A      
Sbjct: 1687 -ISRTGVPQPTQAQSASSPSTPLTVAGTAAEQVPVSPLATRSLEIVLSTEKGEAGHSQPM 1745

Query: 147  GRPA---PLALVQEAPGAAERAREARSEQPTSPGTRHVGCCSRAS 188
            G PA   P  L    P  A+    A       P T      S A+
Sbjct: 1746 GSPASPQPHPLPSAPPRPAQHTTMATRSPALPPETPAAASLSTAT 1790


>gi|169213239 PREDICTED: hypothetical protein LOC100127987 [Homo
           sapiens]
          Length = 755

 Score = 34.3 bits (77), Expect = 0.066
 Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 20/116 (17%)

Query: 35  RPALRLAADSALRLEPAAGCLPVQAGSGRASRRRAVRRVSGRWLPLSRPLLPLLSHPGWP 94
           RPA  LA  + +     AG  P +   G A+       +  +W+P      PL  HP  P
Sbjct: 186 RPAGHLACGAGIWTRAQAG--PHKRAVGAAAGAAQSSGLFSKWVPCQ----PLSQHPTGP 239

Query: 95  DSASSRTLSAESTPPHPHKLVLAPFAASPSAPWSLGSVRSLERGAAREQAACGRPA 150
           + +S            PH L  A   ASP   W  G  ++  +GA   Q   G  A
Sbjct: 240 EPSS-----------RPHALSTA---ASPRPCWGAGHSQTWRQGAGEAQGTRGGSA 281


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.129    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,851,645
Number of Sequences: 37866
Number of extensions: 465022
Number of successful extensions: 3191
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 349
Number of HSP's that attempted gapping in prelim test: 2885
Number of HSP's gapped (non-prelim): 611
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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