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Search of human proteins with 169161987
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161987 PREDICTED: hypothetical protein [Homo sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169162512 PREDICTED: hypothetical protein [Homo sapiens] 248 8e-67
gi|169161987 PREDICTED: hypothetical protein [Homo sapiens] 248 8e-67
gi|169161159 PREDICTED: hypothetical protein [Homo sapiens] 248 8e-67
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 40 3e-04
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 39 7e-04
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 39 7e-04
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ... 39 7e-04
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 39 0.001
gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens] 39 0.001
gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens] 39 0.001
gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens] 39 0.001
gi|239752280 PREDICTED: similar to family with sequence similari... 39 0.001
gi|210032463 family with sequence similarity 48, member B2 [Homo... 39 0.001
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 38 0.002
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 38 0.002
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 37 0.003
gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens] 37 0.003
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 37 0.003
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 37 0.003
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 37 0.003
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 37 0.003
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 37 0.003
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 37 0.003
gi|32401437 H1 histone family, member N, testis-specific [Homo s... 37 0.003
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 37 0.005
gi|48762934 alpha 2 type I collagen [Homo sapiens] 36 0.006
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 36 0.008
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
>gi|169162512 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 248 bits (633), Expect = 8e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60
MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA
Sbjct: 1 MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60
Query: 61 GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119
GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN
Sbjct: 61 GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119
>gi|169161987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 248 bits (633), Expect = 8e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60
MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA
Sbjct: 1 MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60
Query: 61 GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119
GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN
Sbjct: 61 GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119
>gi|169161159 PREDICTED: hypothetical protein [Homo sapiens]
Length = 119
Score = 248 bits (633), Expect = 8e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60
MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA
Sbjct: 1 MLVSGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPA 60
Query: 61 GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119
GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN
Sbjct: 61 GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPERVAKRGN 119
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 40.4 bits (93), Expect = 3e-04
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 7 SLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPA 66
S+ G G + P PR +LP+ G + FP ++A + RP A
Sbjct: 452 SVSGKGEKHPPPRTQLPSSS------------GKISSGNSFPPQQAGSPLKRPFSAAAAI 499
Query: 67 AAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRP 111
AAA AA AA A +A + A AA P+ + A P
Sbjct: 500 AAAAAAAAAAAAAAAAAAPAPALAAAAAPALAAAAAPALAAAAAP 544
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/28 (50%), Positives = 14/28 (50%)
Query: 52 APTHPTRPAGTTAPAAAAGAAPRGGAAP 79
AP PA APAAAA AAP P
Sbjct: 545 APAPAAAPAVAAAPAAAASAAPSHSQKP 572
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 60 AGTTAPAAAAGAAPRGGAAPRARSAARRS 88
A APA A AAP AAP A ++A S
Sbjct: 539 AAAAAPAPAPAAAPAVAAAPAAAASAAPS 567
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 52 APTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
AP AGT AP AA APRG + P +WR+ E G A G+P
Sbjct: 95 APVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSP 145
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 52 APTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
AP AGT AP AA APRG + P +WR+ E G A G+P
Sbjct: 95 APVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSP 145
>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
sapiens]
Length = 238
Score = 39.3 bits (90), Expect = 7e-04
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 52 APTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
AP AGT AP AA APRG + P +WR+ E G A G+P
Sbjct: 95 APVMSHGEAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPGEAGAADGSP 145
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 38.9 bits (89), Expect = 0.001
Identities = 39/110 (35%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 4 SGESLKGTGRR-EPRPRAKLPTCQVAGPCACL------RDRLGPPTQPRGFPGR-RAPTH 55
SG +L G GRR P P AG CL + R GP G G+ RAP
Sbjct: 18 SGCNLVGAGRRCRAWPERAWPQ---AGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES 74
Query: 56 PTRPAGTTAPAAAAGAAPRGGAAPRAR--SAARRSWRAGLEQGRAAGTPP 103
RPA PA +APRG P R S+A R G AG P
Sbjct: 75 NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAP 124
>gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 38.9 bits (89), Expect = 0.001
Identities = 36/98 (36%), Positives = 40/98 (40%), Gaps = 25/98 (25%)
Query: 13 RREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPG--RRAPTHPTRPAGTTA------ 64
R RPR P Q +G GPPT+P G G R P P +PA TA
Sbjct: 5 RHSKRPRFLAPN-QASG---------GPPTEP-GCSGVDREDPVDPVQPAKPTAYVKPMR 53
Query: 65 --PAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAG 100
P A A AP G R SWRAG +G AG
Sbjct: 54 REPPARAQPAPPAGRGQRGGG----SWRAGRGRGSGAG 87
>gi|169166067 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 38.9 bits (89), Expect = 0.001
Identities = 36/98 (36%), Positives = 40/98 (40%), Gaps = 25/98 (25%)
Query: 13 RREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPG--RRAPTHPTRPAGTTA------ 64
R RPR P Q +G GPPT+P G G R P P +PA TA
Sbjct: 5 RHSKRPRFLAPN-QASG---------GPPTEP-GCSGVDREDPVDPVQPAKPTAYVKPMR 53
Query: 65 --PAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAG 100
P A A AP G R SWRAG +G AG
Sbjct: 54 REPPARAQPAPPAGRGQRGGG----SWRAGRGRGSGAG 87
>gi|239744417 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 364
Score = 38.9 bits (89), Expect = 0.001
Identities = 39/110 (35%), Positives = 44/110 (40%), Gaps = 13/110 (11%)
Query: 4 SGESLKGTGRR-EPRPRAKLPTCQVAGPCACL------RDRLGPPTQPRGFPGR-RAPTH 55
SG +L G GRR P P AG CL + R GP G G+ RAP
Sbjct: 121 SGCNLVGAGRRCRAWPERAWPQ---AGDSDCLGQGRRAQRRPGPGVSAVGASGQQRAPES 177
Query: 56 PTRPAGTTAPAAAAGAAPRGGAAPRAR--SAARRSWRAGLEQGRAAGTPP 103
RPA PA +APRG P R S+A R G AG P
Sbjct: 178 NERPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAP 227
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 38.5 bits (88), Expect = 0.001
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 7 SLKGTGRREPRPRAKLPTC--QVAGPCACLRDRLGPPTQPRGFPGRR------APTHPTR 58
S+ G G + P PR +LP+ +++ + + G P + R FP AP
Sbjct: 414 SVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLK-RPFPAAAPAVAAAAPAPAPA 472
Query: 59 PAGTTAPAAAAGAAPRGGAAP 79
PA A AAAA AA GGAAP
Sbjct: 473 PAAAPALAAAAVAAAAGGAAP 493
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 38.5 bits (88), Expect = 0.001
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 7 SLKGTGRREPRPRAKLPTC--QVAGPCACLRDRLGPPTQPRGFPGRR------APTHPTR 58
S+ G G + P PR +LP+ +++ + + G P + R FP AP
Sbjct: 452 SVSGKGEKHPPPRTQLPSSSGKISSGNSFPPQQAGSPLK-RPFPAAAPAVAAAAPAPAPA 510
Query: 59 PAGTTAPAAAAGAAPRGGAAP 79
PA A AAAA AA GGAAP
Sbjct: 511 PAAAPALAAAAVAAAAGGAAP 531
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 37.7 bits (86), Expect = 0.002
Identities = 34/100 (34%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 14 REPR--PRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGA 71
R PR P LP +AGP R RL ++P P PA +T PA+++
Sbjct: 788 RAPRTSPYGGLPAAPLAGPALPAR-RLSRASRPLSASQPSLPHGAPGPAASTRPASSS-- 844
Query: 72 APRGGAAPRARSAA-RRSWRAGLEQGRAAGTPPSRSYAQR 110
PR G P AR+AA R G A G P S R
Sbjct: 845 TPRLGPTPAARAAAPSPDRRDSASPGAAGGLDPQDSARSR 884
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 40 PPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAAR 86
PP P G PG P HP R A P AA PRG R S R
Sbjct: 40 PPAPPPG-PGPAPPQHPPR-AEALPPEAADEGGPRGRLRSRDSSCGR 84
Score = 29.6 bits (65), Expect = 0.55
Identities = 27/79 (34%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 40 PPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQ---- 95
PP P G AP P P T+P AAP G A AR +R S Q
Sbjct: 776 PPASPPG-----APASPRAPR--TSPYGGLPAAPLAGPALPARRLSRASRPLSASQPSLP 828
Query: 96 ----GRAAGTPPSRSYAQR 110
G AA T P+ S R
Sbjct: 829 HGAPGPAASTRPASSSTPR 847
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 37.7 bits (86), Expect = 0.002
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 10/84 (11%)
Query: 37 RLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGG---AAPRARSAARRSWRAGL 93
R T+P+ P +P P PA + PR A PR AARR A
Sbjct: 278 RAATTTRPQTTPAAASPDLPQ-------PAERSRGEPRPAEPRAPPRPPPAARRPPPATA 330
Query: 94 EQGRAAGTPPSRSYAQRPERVAKR 117
R AG+PP+R RP R A R
Sbjct: 331 PSPRRAGSPPTREEEPRPRRSAAR 354
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Query: 9 KGTGRREP--RPRAKLPTCQVAGPCACLRDRLGP-PTQPRGFPGRRAPTHPTRPAGTTAP 65
+G+GR RP+ P R R P P +PR P R P RP TAP
Sbjct: 274 RGSGRAATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPP--RPPPAARRPPPATAP 331
Query: 66 AAA-AGAAPRGGAAPRARSAARR 87
+ AG+ P PR R +A R
Sbjct: 332 SPRRAGSPPTREEEPRPRRSAAR 354
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 37.7 bits (86), Expect = 0.002
Identities = 34/98 (34%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 14 REPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAP 73
R P P A L T + AGP R L P QP G P P PA + + A+ A AAP
Sbjct: 181 RPPSPPAGLST-EPAGPGTAPRPFL--PGQPAEVDGNPPPAAPEAPAASPSTASPAPAAP 237
Query: 74 RGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRP 111
RRS +G A TP R +RP
Sbjct: 238 GDLRQEHFDRLIRRSKLWCYAKGFALDTPSLRRGPERP 275
Score = 28.9 bits (63), Expect = 0.94
Identities = 18/51 (35%), Positives = 19/51 (37%)
Query: 33 CLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARS 83
C RL P PRG P P P R +P A A PRA S
Sbjct: 5 CPAPRLAVPASPRGSPCSPTPRKPCRGTQEFSPLCLRALAFCALAKPRASS 55
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 23/117 (19%)
Query: 9 KGTGRREPRPRAKL--PTCQVAGPCACLRDRLGPPTQ---------------------PR 45
+G+GRR P P + P C+++ P L P PR
Sbjct: 517 QGSGRRRPGPDPQELDPHCKLSFPRLPLTPTESQPPSHNLFVEELRGARAALARGWMLPR 576
Query: 46 GFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
+ P P G+ APAAA+G+ + RA A RA L +G AG P
Sbjct: 577 ALRRQLCPIDPRARPGSVAPAAASGSIESSSLSGRAARLALGKHRACLRRGTEAGRP 633
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 23/117 (19%)
Query: 9 KGTGRREPRPRAKL--PTCQVAGPCACLRDRLGPPTQ---------------------PR 45
+G+GRR P P + P C+++ P L P PR
Sbjct: 517 QGSGRRRPGPDPQELDPHCKLSFPRLPLTPTESQPPSHNLFVEELRGARAALARGWMLPR 576
Query: 46 GFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTP 102
+ P P G+ APAAA+G+ + RA A RA L +G AG P
Sbjct: 577 ALRRQLCPIDPRARPGSVAPAAASGSIESSSLSGRAARLALGKHRACLRRGTEAGRP 633
>gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]
Length = 644
Score = 37.4 bits (85), Expect = 0.003
Identities = 32/87 (36%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 40 PPTQ----PRGFPGRRAP----THPTRPAGTTAPAAAAGAAPRGGAAPRARSA------- 84
PP Q P PG +P + P P+G PA AA APR A PR A
Sbjct: 31 PPAQRAGSPPDAPGSESPALACSTPATPSGEDPPARAAPIAPRPPARPRLERALSLDDKG 90
Query: 85 -ARRSWRAGLEQGRAA-GTPPSRSYAQ 109
RR +R E A GT PSR Q
Sbjct: 91 WRRRRFRGSQEDLEARNGTSPSRGSVQ 117
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 37.4 bits (85), Expect = 0.003
Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 12/110 (10%)
Query: 4 SGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRL-------GPPTQPRGFPGRRAPTHP 56
SG G +PR K G A LR R P QP+G PG RA
Sbjct: 1762 SGSPRSPAGPEKPRGTQKT----TPGVPAVLRGRTVIYVPSPAPRAQPKGTPGPRATPRK 1817
Query: 57 TRPAGTTAPAAAAGAAPRGGAAPRA-RSAARRSWRAGLEQGRAAGTPPSR 105
P PAA A G R+ A+ S A L Q + TPP+R
Sbjct: 1818 VAPPCLAQPAAPAKVPSPGQQRSRSLHRPAKTSELATLSQPPRSATPPAR 1867
Score = 30.4 bits (67), Expect = 0.32
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 18 PRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGA 77
PR+ P ++A + + P +QP P +R P AAGA P GA
Sbjct: 1859 PRSATPPARLAKTPSSSSSQTSPASQP--LPRKRPPV-----------TQAAGALPGPGA 1905
Query: 78 APRARSAARRSWRAGLEQGRAAGTPPSRSYAQRPER 113
+P ++ AR +Q + +P + QRP R
Sbjct: 1906 SPVPKTPARTLL---AKQHKTQRSPVRIPFMQRPAR 1938
Score = 25.8 bits (55), Expect = 7.9
Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 51 RAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAG---TPPSRSY 107
R+P P +P GT A RG S A R+ G RA PP +
Sbjct: 1766 RSPAGPEKPRGTQKTTPGVPAVLRGRTVIYVPSPAPRAQPKGTPGPRATPRKVAPPCLAQ 1825
Query: 108 AQRPERVAKRG 118
P +V G
Sbjct: 1826 PAAPAKVPSPG 1836
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 6 ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
E+ G+ R P PR P +A P L G + RR P P+RPA P
Sbjct: 55 EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 109
Query: 66 AAAAGAAPRGGAAPRARSAARRSWRAG 92
A A PRGG A RA R+ AG
Sbjct: 110 PAPPSALPRGGRAARAGGPGSRARAAG 136
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 6 ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
E+ G+ R P PR P +A P L G + RR P P+RPA P
Sbjct: 38 EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 92
Query: 66 AAAAGAAPRGGAAPRARSAARRSWRAG 92
A A PRGG A RA R+ AG
Sbjct: 93 PAPPSALPRGGRAARAGGPGSRARAAG 119
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 6 ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
E+ G+ R P PR P +A P L G + RR P P+RPA P
Sbjct: 46 EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 100
Query: 66 AAAAGAAPRGGAAPRARSAARRSWRAG 92
A A PRGG A RA R+ AG
Sbjct: 101 PAPPSALPRGGRAARAGGPGSRARAAG 127
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 6 ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
E+ G+ R P PR P +A P L G + RR P P+RPA P
Sbjct: 38 EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 92
Query: 66 AAAAGAAPRGGAAPRARSAARRSWRAG 92
A A PRGG A RA R+ AG
Sbjct: 93 PAPPSALPRGGRAARAGGPGSRARAAG 119
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 37.0 bits (84), Expect = 0.003
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 6 ESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAP 65
E+ G+ R P PR P +A P L G + RR P P+RPA P
Sbjct: 46 EASLGSAPRSPAPREGPPPV-LASPAGHLPG--GRTARWCSGRARRPPPQPSRPA--PPP 100
Query: 66 AAAAGAAPRGGAAPRARSAARRSWRAG 92
A A PRGG A RA R+ AG
Sbjct: 101 PAPPSALPRGGRAARAGGPGSRARAAG 127
>gi|32401437 H1 histone family, member N, testis-specific [Homo
sapiens]
Length = 255
Score = 37.0 bits (84), Expect = 0.003
Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 2/107 (1%)
Query: 6 ESLKGTGRRE-PRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTA 64
E + +GR E PR +AK +V+G A R+ +PR PGR TR T
Sbjct: 89 EVRRKSGRHEAPRGQAKATLLRVSGSDAAGYFRVWKVPKPRRKPGRARQEEGTRAPWRT- 147
Query: 65 PAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAAGTPPSRSYAQRP 111
PAA + R +A AR WR A R+ RP
Sbjct: 148 PAAPRSSRRRRQPLRKAARKAREVWRRNARAKAKANARARRTRRARP 194
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 36.6 bits (83), Expect = 0.005
Identities = 29/85 (34%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 23 PTCQVAGPCACLRDR---LGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAP 79
PT AGP AC+R G T P P P PA P AG AP +
Sbjct: 83 PTASAAGPGACMRASGRPHGNTTASTAPPRHPRPRRPGGPALRPTPRPCAGPAPPPASRD 142
Query: 80 RARSAARRSWRAGLEQGRAAGTPPS 104
RR RAG RA PS
Sbjct: 143 CRCRRPRRWPRAGRRGRRAGACKPS 167
Score = 26.9 bits (58), Expect = 3.6
Identities = 31/93 (33%), Positives = 34/93 (36%), Gaps = 21/93 (22%)
Query: 13 RREPRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAA 72
R PRP A + C C R R P RG R AG P+ A
Sbjct: 125 RPTPRPCAGPAPPPASRDCRCRRPRRWPRAGRRG-----------RRAGACKPSCA---- 169
Query: 73 PRGGAAPRARSAARRSWR---AGLEQGRAAGTP 102
GAA AR A S+R AG R A TP
Sbjct: 170 ---GAAWSARGAPLCSYRTSCAGSCGARTAPTP 199
Score = 26.6 bits (57), Expect = 4.7
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 16 PRPRAKLPTCQVAGPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRG 75
P P P+ + C R P T G G AG TA AA PR
Sbjct: 199 PAPTCASPSAAASSCCRRRRACSSPTTAWSGACG----------AGPTAATAAQPGKPRS 248
Query: 76 GAAP-RARS 83
AAP RAR+
Sbjct: 249 AAAPGRARA 257
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/66 (36%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 29 GPCACLRDR-----LGP--PTQPRGFPGRRAPTHPTRPAGTTAPAAAAG----AAPRGGA 77
GP DR GP P PRG PG R P P G PA AAG RG
Sbjct: 685 GPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAK 744
Query: 78 APRARS 83
P+ +
Sbjct: 745 GPKGEN 750
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 9/62 (14%)
Query: 29 GPCACLRDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAA-------PRGGAAPRA 81
GP D G P GFPG T P P+G + P G A PRG P
Sbjct: 772 GPAGSRGD--GGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVG 829
Query: 82 RS 83
R+
Sbjct: 830 RT 831
Score = 28.9 bits (63), Expect = 0.94
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 41 PTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPR 80
P P G G R T P+ P G PA A G PRG + P+
Sbjct: 968 PVGPAGKHGNRGETGPSGPVG---PAGAVG--PRGPSGPQ 1002
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 41 PTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGG--AAPRARSAARRSWRAGLEQGR- 97
P RG PG PT P G+ P+ G G A A S +GL R
Sbjct: 587 PRGERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERG 646
Query: 98 AAGTPPSRSYAQRPERVAKRGN 119
AAG P + P + GN
Sbjct: 647 AAGIPGGKGEKGEPGLRGEIGN 668
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 34 LRDRLGPPTQP--RGFPGRRAPTHPTRPAGTTAPAAAAGAA-PRGGAAPRARSAAR 86
LR +G P + RG PG PAG T AGAA P G A PR R
Sbjct: 662 LRGEIGNPGRDGARGAPGA---VGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGER 714
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 46 GFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPRARSAAR-RSWRAGLEQGRAAGTPP 103
GFPG + PT G A AGA RG P + A+ G++ G+ PP
Sbjct: 493 GFPGPKGPTGDPGKNGDKGHAGLAGA--RGAPGPDGNNGAQGPPGPQGVQGGKGEQGPP 549
Score = 26.9 bits (58), Expect = 3.6
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 41 PTQPRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGGAAPR 80
PT P G G P P PAG+ G GAA R
Sbjct: 755 PTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGR 794
Score = 26.6 bits (57), Expect = 4.7
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 44 PRGFPGRRAPTHPTRPAGTTAPAAAAGAAPRG 75
P GFPG P G PA AG PRG
Sbjct: 254 PPGFPGAPGPKGEIGAVGNAGPAGPAG--PRG 283
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 16 PRPRAKLPTCQVAGPCACLRDRLGPPTQPRG---FPGRRAPTHPTRPAGTTAPAAAAGAA 72
P P+ ++ AGP P PRG PG P P G A GAA
Sbjct: 261 PGPKGEIGAVGNAGPAG--------PAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAA 312
Query: 73 PRGGAA 78
G A
Sbjct: 313 GLPGVA 318
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 35 RDRLGPPTQPRGFPGRRAPTHPTRPAGTTAPAAAAG 70
R GPP P G G PT P P G P G
Sbjct: 41 RGERGPPGPP-GRDGEDGPTGPPGPPGPPGPPGLGG 75
Score = 25.8 bits (55), Expect = 7.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 45 RGFPGRRAPTHPTRPAGTTAPAAAAGAAPRGG 76
+G PG P P PAG + PA G G
Sbjct: 1041 QGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPG 1072
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 35.8 bits (81), Expect = 0.008
Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 4 SGESLKGTGRREPRPRAKLPTCQVAGPCACLRDRLGP----PTQPRGFP-GRRAPTHPTR 58
SG+ L+ GRR RP P ++ P A R R GP P+ P G P G P R
Sbjct: 139 SGDVLRRAGRRRARPP---PVPRLPAPRAPRRPR-GPATPDPSPPAGRPHGPAGRAAPGR 194
Query: 59 PAGTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLEQGRAA 99
G TA A G R RR W+ RAA
Sbjct: 195 RPGCTAQLRAPGRRGRQRLLVHPGGGGRRQWQRLARARRAA 235
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 35.8 bits (81), Expect = 0.008
Identities = 27/66 (40%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 40 PPTQPRGFPGR---RAPTHPTRPA--GTTAPAAAAGAAPRGGAAPRARSAARRSWRAGLE 94
PP++ RG PGR R+ +HPT+ A PA A A R G A + AR RA
Sbjct: 35 PPSRARGPPGRPSLRSDSHPTQRARRAGEGPARARLEAERAGCAHGPGAPART--RAHAH 92
Query: 95 QGRAAG 100
+GR AG
Sbjct: 93 KGRGAG 98
Score = 26.2 bits (56), Expect = 6.1
Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 51 RAPTHPTRPAGTTAPAAAAGAAPR--GGAAPRARSA-ARRSWRA---GLEQGRAAGTPPS 104
RAPT G APA A AAPR GG A R A ++ SW G+ + P S
Sbjct: 135 RAPT--ASRTGPGAPAEGARAAPREGGGEAVAERCARSQPSWEGELWGVRHLVSLSLPAS 192
Query: 105 RSYAQRPERVAKRG 118
P +RG
Sbjct: 193 SGACAPPPLPPRRG 206
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,544,962
Number of Sequences: 37866
Number of extensions: 422380
Number of successful extensions: 6331
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 786
Number of HSP's that attempted gapping in prelim test: 4052
Number of HSP's gapped (non-prelim): 2742
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.