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Search of human proteins with 169161534
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161534 PREDICTED: hypothetical protein [Homo sapiens]
(70 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161767 PREDICTED: hypothetical protein [Homo sapiens] 144 1e-35
gi|169161534 PREDICTED: hypothetical protein [Homo sapiens] 144 1e-35
gi|169162811 PREDICTED: hypothetical protein [Homo sapiens] 144 1e-35
gi|7705431 coiled-coil domain containing 72 [Homo sapiens] 123 4e-29
gi|169170025 PREDICTED: hypothetical protein [Homo sapiens] 102 5e-23
gi|239508822 PREDICTED: hypothetical protein [Homo sapiens] 102 5e-23
gi|169169043 PREDICTED: hypothetical protein [Homo sapiens] 74 2e-14
gi|239748872 PREDICTED: hypothetical protein [Homo sapiens] 74 2e-14
gi|239742901 PREDICTED: hypothetical protein [Homo sapiens] 74 2e-14
gi|169164035 PREDICTED: hypothetical protein [Homo sapiens] 60 5e-10
gi|169163250 PREDICTED: hypothetical protein [Homo sapiens] 60 5e-10
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 42 1e-04
gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo... 42 1e-04
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 42 1e-04
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|34996489 pleckstrin homology domain interacting protein [Homo... 35 0.013
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s... 35 0.017
gi|91208420 bassoon protein [Homo sapiens] 34 0.022
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 34 0.028
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 34 0.028
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 34 0.028
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 34 0.028
gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo sa... 34 0.028
gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo sa... 34 0.028
gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens] 34 0.028
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 33 0.037
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 33 0.037
gi|46240864 sperm associated antigen 17 [Homo sapiens] 33 0.037
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 33 0.037
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 33 0.048
>gi|169161767 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 144 bits (363), Expect = 1e-35
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 SGEKQAVPCA 70
SGEKQAVPCA
Sbjct: 61 SGEKQAVPCA 70
>gi|169161534 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 144 bits (363), Expect = 1e-35
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 SGEKQAVPCA 70
SGEKQAVPCA
Sbjct: 61 SGEKQAVPCA 70
>gi|169162811 PREDICTED: hypothetical protein [Homo sapiens]
Length = 70
Score = 144 bits (363), Expect = 1e-35
Identities = 70/70 (100%), Positives = 70/70 (100%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK
Sbjct: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 SGEKQAVPCA 70
SGEKQAVPCA
Sbjct: 61 SGEKQAVPCA 70
>gi|7705431 coiled-coil domain containing 72 [Homo sapiens]
Length = 64
Score = 123 bits (308), Expect = 4e-29
Identities = 61/64 (95%), Positives = 62/64 (96%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSG EGGKKKP KQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK
Sbjct: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 61 SGEK 64
SG+K
Sbjct: 61 SGKK 64
>gi|169170025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 102 bits (255), Expect = 5e-23
Identities = 52/64 (81%), Positives = 54/64 (84%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSG +GGKKK KQPKKQAKE DEEDKAFKQKQKEEQKKLEEL KA GK PLATGGIKK
Sbjct: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
Query: 61 SGEK 64
+K
Sbjct: 61 FAKK 64
>gi|239508822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 64
Score = 102 bits (255), Expect = 5e-23
Identities = 52/64 (81%), Positives = 54/64 (84%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
MSG +GGKKK KQPKKQAKE DEEDKAFKQKQKEEQKKLEEL KA GK PLATGGIKK
Sbjct: 1 MSGSKGGKKKALKQPKKQAKEKDEEDKAFKQKQKEEQKKLEELNMKAVGKWPLATGGIKK 60
Query: 61 SGEK 64
+K
Sbjct: 61 FAKK 64
>gi|169169043 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 73.9 bits (180), Expect = 2e-14
Identities = 39/59 (66%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
MSG EGGKKKP KQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|239748872 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 73.9 bits (180), Expect = 2e-14
Identities = 39/59 (66%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
MSG EGGKKKP KQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|239742901 PREDICTED: hypothetical protein [Homo sapiens]
Length = 59
Score = 73.9 bits (180), Expect = 2e-14
Identities = 39/59 (66%), Positives = 46/59 (77%), Gaps = 2/59 (3%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL--KAKAAGKGPLATGG 57
MSG EGGKKKP KQPKKQAKEMDEE +A K+++K E ++ +EL KAKA GKGPL G
Sbjct: 1 MSGLEGGKKKPLKQPKKQAKEMDEEQEASKREKKGEAEETQELKVKAKAVGKGPLPEHG 59
>gi|169164035 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 59.7 bits (143), Expect = 5e-10
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLE 41
MSGH+GGKK+P KQ K+QAKEMD+ED AFKQKQ E + L+
Sbjct: 1 MSGHKGGKKQPLKQHKEQAKEMDKEDVAFKQKQTEAEGALD 41
>gi|169163250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 171
Score = 59.7 bits (143), Expect = 5e-10
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLE 41
MSGH+GGKK+P KQ K+QAKEMD+ED AFKQKQ E + L+
Sbjct: 1 MSGHKGGKKQPLKQHKEQAKEMDKEDVAFKQKQTEAEGALD 41
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 41.6 bits (96), Expect = 1e-04
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK-GPLATGGIKKSGEKQ 65
+K+P KQPKK + EEDK K+ K+E KK E K K K G +T ++ G+ Q
Sbjct: 224 EKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQ 282
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 7 GKKKPPKQP-KKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
G+ K KQP ++ + EEDK+ K+ Q+E+Q K + K + K
Sbjct: 195 GRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQK 239
>gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo
sapiens]
Length = 333
Score = 41.6 bits (96), Expect = 1e-04
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK-GPLATGGIKKSGEKQ 65
+K+P KQPKK + EEDK K+ K+E KK E K K K G +T ++ G+ Q
Sbjct: 224 EKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQ 282
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 7 GKKKPPKQP-KKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
G+ K KQP ++ + EEDK+ K+ Q+E+Q K + K + K
Sbjct: 195 GRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQK 239
>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 41.6 bits (96), Expect = 1e-04
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK-GPLATGGIKKSGEKQ 65
+K+P KQPKK + EEDK K+ K+E KK E K K K G +T ++ G+ Q
Sbjct: 224 EKQPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTSTSDSEEEGDDQ 282
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 7 GKKKPPKQP-KKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
G+ K KQP ++ + EEDK+ K+ Q+E+Q K + K + K
Sbjct: 195 GRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPKKDEEGQK 239
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 35.0 bits (79), Expect = 0.013
Identities = 16/45 (35%), Positives = 31/45 (68%)
Query: 5 EGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAG 49
E K+K ++ K++ KE ++E + K+K+K+++KK ++L AK G
Sbjct: 75 EKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCG 119
Score = 31.2 bits (69), Expect = 0.18
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
K+K ++ K++ KE ++E + K+K+K+++KK ++ K K K
Sbjct: 74 KEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAK 116
Score = 29.6 bits (65), Expect = 0.53
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 16 KKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPL 53
K++ KE ++E + K+K+KE++KK ++ K K K L
Sbjct: 76 KEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKL 113
Score = 29.3 bits (64), Expect = 0.70
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
KK K++ KE ++E + K+K+KE++K+ ++ K K K
Sbjct: 66 KKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKKKKKKK 108
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 9 KKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
KK KK +E + K+K+KE++K+ E+ K K K
Sbjct: 59 KKRTTTTKKTTTTTTKEKEKEKEKEKEKEKEKEKEKEKEKKK 100
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 35.0 bits (79), Expect = 0.013
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGEKQ 65
KK P + KK DEE+++ KQKQK Q K E+ K GP++ K KQ
Sbjct: 867 KKVPKNKTKKAESSSDEEEESEKQKQK--QIKKEKKKVNEEKDGPISPKKKKPKERKQ 922
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 5 EGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGI 58
E +K+ KQ KK+ K+++EE +K KK +E K K G L G+
Sbjct: 885 EESEKQKQKQIKKEKKKVNEEKDGPISPKK---KKPKERKQKRLAVGELTENGL 935
>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
sapiens]
Length = 1029
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAF--KQKQKEEQKKLE 41
M GH GK PP + KQ KE + E++ K+++KE++KK E
Sbjct: 23 MEGH--GKTPPPGEESKQEKEQEREEQLMEDKKRKKEDKKKKE 63
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 5 EGGKKKPPKQPKKQAKEMDEEDKAFKQ--KQKEEQKKLEELKAKAAGKGPLATGGIKKSG 62
EGG P QP +A E+ +ED +Q + E+ LEE +G+G LA G +K G
Sbjct: 820 EGGLSPLPPQPPARAAELTDEDFMRRQILEMSAEEDNLEEDDTATSGRG-LAKHGTQKGG 878
Query: 63 EK 64
+
Sbjct: 879 PR 880
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 33.9 bits (76), Expect = 0.028
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQ 37
+ G G K+P K +K+ +E DEED+ ++K+K+E+
Sbjct: 161 LKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEKDEE 197
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 33.9 bits (76), Expect = 0.028
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQ 37
+ G G K+P K +K+ +E DEED+ ++K+K+E+
Sbjct: 161 LKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEKDEE 197
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 33.9 bits (76), Expect = 0.028
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQ 37
+ G G K+P K +K+ +E DEED+ ++K+K+E+
Sbjct: 161 LKGKFYGAKRPAKVARKKVEEEDEEDEEEEEKEKDEE 197
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 33.9 bits (76), Expect = 0.028
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
K+K K+ KK+ K+ E++K K+K++E++K+ E + K K
Sbjct: 697 KEKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEK 739
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQK-KLEELKAKAAGKGP 52
KKK K+ +K+ KE ++E + ++++KE++K K E++K + P
Sbjct: 709 KKKKEKEKEKKEKEREKEKREREKREKEKEKHKHEKIKVEPVALAP 754
Score = 31.2 bits (69), Expect = 0.18
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 5 EGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAK 46
E KKK K+ KK+ ++ E+ + ++K+K E++K E+ K K
Sbjct: 698 EKEKKKDKKEKKKKKEKEKEKKEKEREKEKREREKREKEKEK 739
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
+KK K+ KK+ KE ++E K K+++KE++++ + K K K
Sbjct: 700 EKKKDKKEKKKKKEKEKEKKE-KEREKEKREREKREKEKEKHK 741
Score = 26.2 bits (56), Expect = 5.9
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 8 KKKPPKQPKKQAKEMD---EEDKAFKQKQKEEQKKLEELKAKAAGK 50
KK+ + KK+ K+ D E+DK K K KE+ K E+ K K G+
Sbjct: 526 KKELKTKMKKKEKQRDREREKDKN-KDKSKEKDKVKEKEKDKETGR 570
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEE-LKAKA 47
K+K + KK+ +E ++DK ++K+K + K E+ +KA A
Sbjct: 611 KEKEKHKDKKKDREKGKKDKDKREKEKVKDKGREDKMKAPA 651
>gi|40788007 FYN binding protein (FYB-120/130) isoform 2 [Homo
sapiens]
Length = 783
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 5 EGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPL 53
E K++ K+ K++ K ++ E K++QKE++KK +E+K K GP+
Sbjct: 466 EASKEREKKREKEEKKRLELE----KKEQKEKEKKEQEIKKKFKLTGPI 510
>gi|42476118 FYN binding protein (FYB-120/130) isoform 1 [Homo
sapiens]
Length = 829
Score = 33.9 bits (76), Expect = 0.028
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 5 EGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPL 53
E K++ K+ K++ K ++ E K++QKE++KK +E+K K GP+
Sbjct: 466 EASKEREKKREKEEKKRLELE----KKEQKEKEKKEQEIKKKFKLTGPI 510
>gi|155722987 elongation factor, RNA polymerase II, 2 [Homo sapiens]
Length = 640
Score = 33.9 bits (76), Expect = 0.028
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 13 KQPKKQAKEMDEEDKAFKQ-----KQKEEQKKLEELKAKAAGKGPLATGGIKKSGEKQAV 67
K+ KK++K+ E+D+ K ++KEE K EE AK P ++GG+K+
Sbjct: 460 KKSKKKSKKHKEKDQIKKHDIETIEEKEEDLKREEEIAKLNNSSPNSSGGVKEDCTASME 519
Query: 68 PCA 70
P A
Sbjct: 520 PSA 522
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 33.5 bits (75), Expect = 0.037
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 3 GHEGGKKKPPKQPKKQAK-EMDEEDKAFKQKQKEEQKKLEELK 44
G G+ + +P ++ K E EEDKA K ++KEE+KK EE K
Sbjct: 496 GKRRGRNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKKDEEEK 538
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 5 EGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKA 47
E + K K KK+ ++ DEE+K K+ KE K+ +++ A
Sbjct: 516 EKEEDKAEKTEKKEEEKKDEEEKDEKEDSKENTKEKDKIDGTA 558
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 12 PKQPKKQAKEMDEEDKAFKQ--KQKEEQKKLEELKAKAAG 49
P++ K++K + +K F + KQ+E+Q++ + + + AG
Sbjct: 329 PRRKAKESKTREYYEKQFPEIRKQREQQERFQRVGQRGAG 368
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 10 KPPKQPKKQAKEMDEEDKAFKQ----KQKEEQKKLEELKAKAAGKGPLATGGIKKSGEKQ 65
+P ++ K + KE D+ +K K+ K +EE+ + E+ K K + + +Q
Sbjct: 507 RPSQEEKVEEKEEDKAEKTEKKEEEKKDEEEKDEKEDSKENTKEKDKIDGTAEETEEREQ 566
Query: 66 AVP 68
A P
Sbjct: 567 ATP 569
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 7 GKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGP 52
GK+KPPK KK ++ + K K+K + KK +E KA K P
Sbjct: 120 GKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPP 165
Score = 29.6 bits (65), Expect = 0.53
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 3 GHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGK 50
G +G K K PK PK+ + K K+K + KK +E KA K
Sbjct: 94 GKKGKKDKGPKVPKESLEGSPRPPKKGKEKPPKATKKPKEKPPKATKK 141
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 11 PPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKG 51
PP Q ++ DEE + K+ +KE+ EE A KG
Sbjct: 321 PPPQKPDAERQTDEEKEELKKPKKEDSSPKEETDKWAVEKG 361
>gi|46240864 sperm associated antigen 17 [Homo sapiens]
Length = 2223
Score = 33.5 bits (75), Expect = 0.037
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 3 GHEGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEEL 43
G E GKKK +K+ ++ +K+K KEEQ K++E+
Sbjct: 963 GKEAGKKKGKDNAEKEDSRSLKKKSPYKEKSKEEQVKIQEV 1003
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 33.5 bits (75), Expect = 0.037
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 5 EGGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGE 63
E ++K K+ +KQ KE ++++K ++++K+ Q + L+ KA G GG + S E
Sbjct: 743 EKERQKQEKEREKQEKEREKQEKERQKQEKKAQGRKLSLRRKADGPPGPHDGGDRPSAE 801
Score = 31.2 bits (69), Expect = 0.18
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 6 GGKKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEE 42
G K+ KQ K++ K+ E K K+++KE QK+ +E
Sbjct: 716 GSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKE 752
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 33.1 bits (74), Expect = 0.048
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 13 KQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGEKQAVPCA 70
K K + KE E K + KQKE Q+K EE K+ K + TG I S EK P A
Sbjct: 249 KLRKLKEKEELETGKKDQSKQKESQRKFEEETVKS--KVTVDTGVIPASEEKAETPTA 304
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 24/67 (35%)
Query: 4 HEGGKKKPPKQPKKQAKE------------------------MDEEDKAFKQKQKEEQKK 39
+EG KKK K+ KK KE + EE++ K++++E K+
Sbjct: 309 NEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKR 368
Query: 40 LEELKAK 46
LEEL+AK
Sbjct: 369 LEELEAK 375
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 1 MSGHEGGKKKPPKQPKKQAKEMDEEDKA-FK---------QKQKEEQKKLEELKA---KA 47
+ +G KK +P + +E+D A FK +K++ E+KK +E KA K
Sbjct: 194 LQSRKGQKKNQKNKPGPNIESGNEDDDASFKIKTVAQKKAEKKERERKKRDEEKAKLRKL 253
Query: 48 AGKGPLATGGIKKSGEKQA 66
K L TG +S +K++
Sbjct: 254 KEKEELETGKKDQSKQKES 272
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 8 KKKPPKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELK 44
K+ + K++ +E E++K ++KQKE+++K E LK
Sbjct: 367 KRLEELEAKRKEEERLEQEKRERKKQKEKERK-ERLK 402
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.300 0.122 0.330
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,407,077
Number of Sequences: 37866
Number of extensions: 145326
Number of successful extensions: 3993
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 2307
Number of HSP's gapped (non-prelim): 1521
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.