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Search of human proteins with 169161514
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161514 PREDICTED: hypothetical protein [Homo sapiens]
(147 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169160782 PREDICTED: hypothetical protein [Homo sapiens] 316 5e-87
gi|169161514 PREDICTED: hypothetical protein [Homo sapiens] 316 5e-87
gi|169161436 PREDICTED: hypothetical protein [Homo sapiens] 316 5e-87
gi|239751152 PREDICTED: hypothetical protein XP_002347737 [Homo ... 34 0.038
gi|212276104 leucine rich repeat (in FLII) interacting protein 1... 33 0.11
gi|212276096 leucine rich repeat (in FLII) interacting protein 1... 33 0.11
gi|212276070 leucine rich repeat (in FLII) interacting protein 1... 33 0.11
gi|225543461 tetratricopeptide repeat, ankyrin repeat and coiled... 32 0.19
gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens] 30 0.55
gi|38570115 zinc finger protein 362 [Homo sapiens] 30 0.55
gi|225543463 tetratricopeptide repeat, ankyrin repeat and coiled... 30 0.72
gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens] 30 0.72
gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo ... 30 0.72
gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo ... 30 0.72
gi|61743978 stabilin 1 precursor [Homo sapiens] 30 0.72
gi|239755684 PREDICTED: hypothetical protein [Homo sapiens] 30 0.95
gi|239750147 PREDICTED: hypothetical protein [Homo sapiens] 30 0.95
gi|239744457 PREDICTED: hypothetical protein [Homo sapiens] 30 0.95
gi|51093861 caspase recruitment domain protein 10 [Homo sapiens] 30 0.95
gi|194306562 hypothetical protein LOC81926 isoform 1 [Homo sapiens] 30 0.95
gi|33188431 tetratricopeptide repeat protein isoform 3 [Homo sap... 30 0.95
gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo sap... 30 0.95
gi|33188427 tetratricopeptide repeat protein isoform 2 [Homo sap... 30 0.95
gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens] 29 1.2
gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens] 29 1.2
gi|90193619 nuclear matrix transcription factor 4 isoform c [Hom... 29 1.6
gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom... 29 1.6
gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom... 29 1.6
gi|90193613 nuclear matrix transcription factor 4 isoform a [Hom... 29 1.6
gi|90193611 nuclear matrix transcription factor 4 isoform a [Hom... 29 1.6
>gi|169160782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 316 bits (809), Expect = 5e-87
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MGKLSPGPQVQPGGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAV 60
MGKLSPGPQVQPGGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAV
Sbjct: 1 MGKLSPGPQVQPGGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAV 60
Query: 61 CVPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADR 120
CVPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADR
Sbjct: 61 CVPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADR 120
Query: 121 MCTAFQGLCATQTQGLWASAPPRPRHT 147
MCTAFQGLCATQTQGLWASAPPRPRHT
Sbjct: 121 MCTAFQGLCATQTQGLWASAPPRPRHT 147
>gi|169161514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 316 bits (809), Expect = 5e-87
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MGKLSPGPQVQPGGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAV 60
MGKLSPGPQVQPGGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAV
Sbjct: 1 MGKLSPGPQVQPGGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAV 60
Query: 61 CVPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADR 120
CVPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADR
Sbjct: 61 CVPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADR 120
Query: 121 MCTAFQGLCATQTQGLWASAPPRPRHT 147
MCTAFQGLCATQTQGLWASAPPRPRHT
Sbjct: 121 MCTAFQGLCATQTQGLWASAPPRPRHT 147
>gi|169161436 PREDICTED: hypothetical protein [Homo sapiens]
Length = 147
Score = 316 bits (809), Expect = 5e-87
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MGKLSPGPQVQPGGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAV 60
MGKLSPGPQVQPGGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAV
Sbjct: 1 MGKLSPGPQVQPGGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAV 60
Query: 61 CVPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADR 120
CVPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADR
Sbjct: 61 CVPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADR 120
Query: 121 MCTAFQGLCATQTQGLWASAPPRPRHT 147
MCTAFQGLCATQTQGLWASAPPRPRHT
Sbjct: 121 MCTAFQGLCATQTQGLWASAPPRPRHT 147
>gi|239751152 PREDICTED: hypothetical protein XP_002347737 [Homo
sapiens]
Length = 246
Score = 34.3 bits (77), Expect = 0.038
Identities = 27/96 (28%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 13 GGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAVCVPGHRQGHVGS 72
G A +++ Q S T+ DG R T P A LI C + HRQG
Sbjct: 32 GWASQRQEKQREEASELHTAFDGARKTSDRKSPGKSASLI----CLETAL--HRQGCAQQ 85
Query: 73 EAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTD 108
C HP+ LC + T H+ D H +
Sbjct: 86 LGDDCSHPSALCGSHPERTEQRVDHTMDVVQREHVE 121
>gi|212276104 leucine rich repeat (in FLII) interacting protein 1
isoform 5 [Homo sapiens]
Length = 752
Score = 32.7 bits (73), Expect = 0.11
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 14 GAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAVCVPGHRQGHVGSE 73
GA + R+ P+ S + DGG +TE + + A V Q+ G A C GH S+
Sbjct: 339 GAPDDRTRTPLEPSNCWSDLDGGNHTENVGE-AAVTQVEEQAGTVASCPLGH------SD 391
Query: 74 AQVCPHPACLC-VAQQLPTRAGHT 96
V C+ V Q+L T GH+
Sbjct: 392 DTVYHDDKCMVEVPQELETSTGHS 415
>gi|212276096 leucine rich repeat (in FLII) interacting protein 1
isoform 3 [Homo sapiens]
Length = 808
Score = 32.7 bits (73), Expect = 0.11
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 14 GAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAVCVPGHRQGHVGSE 73
GA + R+ P+ S + DGG +TE + + A V Q+ G A C GH S+
Sbjct: 395 GAPDDRTRTPLEPSNCWSDLDGGNHTENVGE-AAVTQVEEQAGTVASCPLGH------SD 447
Query: 74 AQVCPHPACLC-VAQQLPTRAGHT 96
V C+ V Q+L T GH+
Sbjct: 448 DTVYHDDKCMVEVPQELETSTGHS 471
>gi|212276070 leucine rich repeat (in FLII) interacting protein 1
isoform 4 [Homo sapiens]
Length = 784
Score = 32.7 bits (73), Expect = 0.11
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 14 GAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQGCTAVCVPGHRQGHVGSE 73
GA + R+ P+ S + DGG +TE + + A V Q+ G A C GH S+
Sbjct: 371 GAPDDRTRTPLEPSNCWSDLDGGNHTENVGE-AAVTQVEEQAGTVASCPLGH------SD 423
Query: 74 AQVCPHPACLC-VAQQLPTRAGHT 96
V C+ V Q+L T GH+
Sbjct: 424 DTVYHDDKCMVEVPQELETSTGHS 447
>gi|225543461 tetratricopeptide repeat, ankyrin repeat and
coiled-coil containing 1 isoform 1 [Homo sapiens]
Length = 1861
Score = 32.0 bits (71), Expect = 0.19
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 73 EAQVCPHPACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADRMCTAF-QGL--C 129
EA+ P+C AQ+L TR G PS H TI+ + MCTA QG+ C
Sbjct: 122 EAKADNEPSCSPAAQELLTRLGFLLGEGIPSATH-----ITIEDKNETMCTALSQGISPC 176
Query: 130 ATQTQGLWASAPPRPRHT 147
+T T + + P T
Sbjct: 177 STLTSSTASPSTDSPCST 194
>gi|119393899 GLI-Kruppel family member GLI3 [Homo sapiens]
Length = 1580
Score = 30.4 bits (67), Expect = 0.55
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 8/56 (14%)
Query: 55 QGCTAVC-----VPGHRQGHVGSEAQVCPHPACLCVAQQLPTRAGH---THSTDRP 102
+GCT + H + H G + VC H C RA H THS ++P
Sbjct: 551 EGCTKAYSRLENLKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKP 606
>gi|38570115 zinc finger protein 362 [Homo sapiens]
Length = 420
Score = 30.4 bits (67), Expect = 0.55
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 65 HRQGHVGSEAQVCPHPACLCVAQQLPTRAGH--THSTDRP 102
H + H G CPHP C QL H H+ D+P
Sbjct: 301 HTRIHTGDRPYKCPHPGCEKAFTQLSNLQSHQRQHNKDKP 340
>gi|225543463 tetratricopeptide repeat, ankyrin repeat and
coiled-coil containing 1 isoform 2 [Homo sapiens]
Length = 1390
Score = 30.0 bits (66), Expect = 0.72
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 80 PACLCVAQQLPTRAGHTHSTDRPSHGHTDKDGFTIDTGADRMCTAF-QGL--CATQTQGL 136
P+C AQ+L TR G PS H TI+ + MCTA QG+ C+T T
Sbjct: 128 PSCSPAAQELLTRLGFLLGEGIPSATH-----ITIEDKNETMCTALSQGISPCSTLTSST 182
Query: 137 WASAPPRPRHT 147
+ + P T
Sbjct: 183 ASPSTDSPCST 193
>gi|86991432 GLI-Kruppel family member GLI2 [Homo sapiens]
Length = 1586
Score = 30.0 bits (66), Expect = 0.72
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 65 HRQGHVGSEAQVCPHPACLCVAQQLPTRAGH---THSTDRP 102
H + H G + VC H C RA H THS ++P
Sbjct: 523 HLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKP 563
>gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
sapiens]
Length = 305
Score = 30.0 bits (66), Expect = 0.72
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 13 GGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAG--VAQLILGQG----CTAVCVPGHR 66
GG G Q++D P L+ G G ++LQ G +L GQG CTA C G
Sbjct: 20 GGWGHQKADDTRVAGPGLSGGHG---EAEVLQQGGEEEEELHAGQGLPEACTAACGEGRG 76
Query: 67 QGHVGS 72
GS
Sbjct: 77 VSEPGS 82
>gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo
sapiens]
Length = 306
Score = 30.0 bits (66), Expect = 0.72
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 13 GGAGEQRSDQPVSLSPELTSGDGGRYTEKILQPAG--VAQLILGQG----CTAVCVPGHR 66
GG G Q++D P L+ G G ++LQ G +L GQG CTA C G
Sbjct: 20 GGWGHQKADDTRVAGPGLSGGHG---EAEVLQQGGEEEEELHAGQGLPEACTAACGEGRG 76
Query: 67 QGHVGS 72
GS
Sbjct: 77 VSEPGS 82
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 30.0 bits (66), Expect = 0.72
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 53 LGQGCTAVCV-----PGHRQGHVGSEAQVCP 78
LG+GC CV P GH GSE Q CP
Sbjct: 1942 LGRGCHRNCVTTTWKPSCCPGHYGSECQACP 1972
>gi|239755684 PREDICTED: hypothetical protein [Homo sapiens]
Length = 415
Score = 29.6 bits (65), Expect = 0.95
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 63 PGHRQG-HVGSEAQVCPHPACLCVA-QQLPT-RAGHTHSTDRPSHG 105
P HR G + + PHPACLCV+ Q P+ AG + S P G
Sbjct: 255 PSHRPGARLSLSLCLLPHPACLCVSVPQAPSDSAGLSRSLPPPPAG 300
>gi|239750147 PREDICTED: hypothetical protein [Homo sapiens]
Length = 415
Score = 29.6 bits (65), Expect = 0.95
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 63 PGHRQG-HVGSEAQVCPHPACLCVA-QQLPT-RAGHTHSTDRPSHG 105
P HR G + + PHPACLCV+ Q P+ AG + S P G
Sbjct: 255 PSHRPGARLSLSLCLLPHPACLCVSVPQAPSDSAGLSRSLPPPPAG 300
>gi|239744457 PREDICTED: hypothetical protein [Homo sapiens]
Length = 351
Score = 29.6 bits (65), Expect = 0.95
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 63 PGHRQG-HVGSEAQVCPHPACLCVA-QQLPT-RAGHTHSTDRPSHG 105
P HR G + + PHPACLCV+ Q P+ AG + S P G
Sbjct: 191 PSHRPGARLSLSLCLLPHPACLCVSVPQAPSDSAGLSRSLPPPPAG 236
>gi|51093861 caspase recruitment domain protein 10 [Homo sapiens]
Length = 1032
Score = 29.6 bits (65), Expect = 0.95
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 35 GGRYTEKILQPAGVAQLILGQGCTAVCVPGHRQGHVGSEAQV 76
G R +E + Q G Q++ G C+ V VP H GH A+V
Sbjct: 962 GWRDSELLRQCRGSEQVLWGLPCSWVQVPAHEWGHAEELAKV 1003
>gi|194306562 hypothetical protein LOC81926 isoform 1 [Homo sapiens]
Length = 361
Score = 29.6 bits (65), Expect = 0.95
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 4 LSPGPQVQPGGAG-------EQRSDQPVSLSPELTSGDGGRYTEKILQPAGVAQLILGQG 56
L P P+ PGGAG S P LT +Y+++ L V +G
Sbjct: 37 LVPEPEPGPGGAGAAPLGTLRASSGAPGRWKLHLTERADFQYSQRELDTIEVFPTKSARG 96
Query: 57 ----CTAV-CVPGHRQGH 69
C V CVPG RQGH
Sbjct: 97 NRVSCMYVRCVPGARQGH 114
>gi|33188431 tetratricopeptide repeat protein isoform 3 [Homo
sapiens]
Length = 1347
Score = 29.6 bits (65), Expect = 0.95
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 43 LQPAGVAQLILGQGCTAVCVPGHRQGHVGSEAQVCPHPACLCVAQQ---LPTRAGHTHST 99
++PA V +L+ +A C+P +GS + C+ ++ +P +TH+
Sbjct: 507 VRPACVEKLLSSGAFSAGCIPCGTSKILGSTDTILLGSNCIAGSESNGNVPYLQQNTHTL 566
Query: 100 DRPSHGHTDKDGFTIDTGADRMCTAFQGLCATQTQGL 136
H HTD + T + ++ + QGL +Q+ L
Sbjct: 567 P---HNHTDLNSSTEEPWRKQLSNSAQGLHKSQSSCL 600
>gi|33188429 tetratricopeptide repeat protein isoform 1 [Homo
sapiens]
Length = 1079
Score = 29.6 bits (65), Expect = 0.95
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 43 LQPAGVAQLILGQGCTAVCVPGHRQGHVGSEAQVCPHPACLCVAQQ---LPTRAGHTHST 99
++PA V +L+ +A C+P +GS + C+ ++ +P +TH+
Sbjct: 507 VRPACVEKLLSSGAFSAGCIPCGTSKILGSTDTILLGSNCIAGSESNGNVPYLQQNTHTL 566
Query: 100 DRPSHGHTDKDGFTIDTGADRMCTAFQGLCATQTQGL 136
H HTD + T + ++ + QGL +Q+ L
Sbjct: 567 P---HNHTDLNSSTEEPWRKQLSNSAQGLHKSQSSCL 600
>gi|33188427 tetratricopeptide repeat protein isoform 2 [Homo
sapiens]
Length = 1240
Score = 29.6 bits (65), Expect = 0.95
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 43 LQPAGVAQLILGQGCTAVCVPGHRQGHVGSEAQVCPHPACLCVAQQ---LPTRAGHTHST 99
++PA V +L+ +A C+P +GS + C+ ++ +P +TH+
Sbjct: 507 VRPACVEKLLSSGAFSAGCIPCGTSKILGSTDTILLGSNCIAGSESNGNVPYLQQNTHTL 566
Query: 100 DRPSHGHTDKDGFTIDTGADRMCTAFQGLCATQTQGL 136
H HTD + T + ++ + QGL +Q+ L
Sbjct: 567 P---HNHTDLNSSTEEPWRKQLSNSAQGLHKSQSSCL 600
>gi|229892345 GLI family zinc finger 1 isoform 2 [Homo sapiens]
Length = 978
Score = 29.3 bits (64), Expect = 1.2
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 65 HRQGHVGSEAQVCPHPACLCVAQQLPTRAGH---THSTDRP 102
H + H G + +C H C RA H THS ++P
Sbjct: 193 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 233
>gi|4885279 GLI family zinc finger 1 isoform 1 [Homo sapiens]
Length = 1106
Score = 29.3 bits (64), Expect = 1.2
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 65 HRQGHVGSEAQVCPHPACLCVAQQLPTRAGH---THSTDRP 102
H + H G + +C H C RA H THS ++P
Sbjct: 321 HLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 361
>gi|90193619 nuclear matrix transcription factor 4 isoform c [Homo
sapiens]
Length = 461
Score = 28.9 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 65 HRQGHVGSEAQVCPHPACLCVAQQLPTRAGH--THSTDRPSHGHTDKDGFT 113
H + H G C HP C QL H H+ D+P H +T
Sbjct: 247 HTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHNKDKPFKCHNCHRAYT 297
>gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 28.9 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 65 HRQGHVGSEAQVCPHPACLCVAQQLPTRAGH--THSTDRPSHGHTDKDGFT 113
H + H G C HP C QL H H+ D+P H +T
Sbjct: 286 HTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHNKDKPFKCHNCHRAYT 336
>gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 28.9 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 65 HRQGHVGSEAQVCPHPACLCVAQQLPTRAGH--THSTDRPSHGHTDKDGFT 113
H + H G C HP C QL H H+ D+P H +T
Sbjct: 286 HTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHNKDKPFKCHNCHRAYT 336
>gi|90193613 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 28.9 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 65 HRQGHVGSEAQVCPHPACLCVAQQLPTRAGH--THSTDRPSHGHTDKDGFT 113
H + H G C HP C QL H H+ D+P H +T
Sbjct: 302 HTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHNKDKPFKCHNCHRAYT 352
>gi|90193611 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 28.9 bits (63), Expect = 1.6
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 65 HRQGHVGSEAQVCPHPACLCVAQQLPTRAGH--THSTDRPSHGHTDKDGFT 113
H + H G C HP C QL H H+ D+P H +T
Sbjct: 302 HTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHNKDKPFKCHNCHRAYT 352
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,939,582
Number of Sequences: 37866
Number of extensions: 421125
Number of successful extensions: 1299
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1252
Number of HSP's gapped (non-prelim): 95
length of query: 147
length of database: 18,247,518
effective HSP length: 93
effective length of query: 54
effective length of database: 14,725,980
effective search space: 795202920
effective search space used: 795202920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.