Guide to the Human Genome
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Name: LOC100290251 Sequence: fasta or formatted (246aa) NCBI GI: 239751152
Description:

PREDICTED: hypothetical protein XP_002347737

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         17           1
 C cysteine            4.1         10           1
 D aspartate           8.5         21           2
 E glutamate           5.7         14           2
 F phenylalanine       1.2          3           1
 G glycine             8.5         21           2
 H histidine           6.5         16           2
 I isoleucine          0.8          2           1
 K lysine              2.8          7           1
 L leucine            11.0         27           2
 M methionine          1.2          3           1
 N asparagine          0.0          0           0
 P proline             6.5         16           2
 Q glutamine           7.3         18           2
 R arginine            8.9         22           2
 S serine              6.9         17           2
 T threonine           4.1         10           1
 V valine              7.3         18           2
 W tryptophan          1.2          3           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347737 
LOC100293800          0.546   PREDICTED: hypothetical protein 
LOC100289515          0.546   PREDICTED: hypothetical protein XP_002344165 
LOC100128838          0.018   PREDICTED: hypothetical protein 
LOC100128838          0.018   PREDICTED: hypothetical protein 
LOC100128838          0.018   PREDICTED: hypothetical protein 
NSMAF                 0.016   neutral sphingomyelinase (N-SMase) activation associ...
NSMAF                 0.016   neutral sphingomyelinase (N-SMase) activation assoc...
SVIL                  0.012   supervillin isoform 2 
SVIL                  0.012   supervillin isoform 1 
UHRF2                 0.010   ubiquitin-like with PHD and ring finger domains 2 [H...
NOL8                  0.010   nucleolar protein 8 
LUZP2                 0.008   leucine zipper protein 2 
PNKD                  0.006   myofibrillogenesis regulator 1 isoform 2 
PNKD                  0.006   myofibrillogenesis regulator 1 isoform 1 
NEIL3                 0.006   nei endonuclease VIII-like 3 
ZNF318                0.006   zinc finger protein 318 
LRP1                  0.006   low density lipoprotein-related protein 1 
MPRIP                 0.006   myosin phosphatase-Rho interacting protein isoform 2...
MPRIP                 0.006   myosin phosphatase-Rho interacting protein isoform 1...
WISP1                 0.006   WNT1 inducible signaling pathway protein 1 isoform 1 ...
WISP1                 0.006   WNT1 inducible signaling pathway protein 1 isoform 2...
SENP5                 0.006   SUMO1/sentrin specific peptidase 5 
SYCE1                 0.006   synaptonemal complex central element protein 1 isof...
ACRV1                 0.006   acrosomal vesicle protein 1 isoform c precursor [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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