Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128838 Sequence: fasta or formatted (147aa) NCBI GI: 169161514
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {147aa} PREDICTED: hypothetical protein
alt mRNA {147aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         13           1
 C cysteine            4.8          7           1
 D aspartate           4.8          7           1
 E glutamate           2.7          4           1
 F phenylalanine       1.4          2           1
 G glycine            13.6         20           2
 H histidine           5.4          8           1
 I isoleucine          2.0          3           1
 K lysine              2.0          3           1
 L leucine             6.8         10           1
 M methionine          1.4          2           1
 N asparagine          0.0          0           0
 P proline             9.5         14           2
 Q glutamine           9.5         14           2
 R arginine            5.4          8           1
 S serine              6.1          9           1
 T threonine           8.8         13           1
 V valine              5.4          8           1
 W tryptophan          0.7          1           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128838          1.000   PREDICTED: hypothetical protein 
LOC100128838          1.000   PREDICTED: hypothetical protein 
LOC100290251          0.031   PREDICTED: hypothetical protein XP_002347737 
LRRFIP1               0.027   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.027   leucine rich repeat (in FLII) interacting protein 1...
LRRFIP1               0.027   leucine rich repeat (in FLII) interacting protein 1...
TANC1                 0.024   tetratricopeptide repeat, ankyrin repeat and coiled...
GLI3                  0.017   GLI-Kruppel family member GLI3 
ZNF362                0.017   zinc finger protein 362 
TANC1                 0.017   tetratricopeptide repeat, ankyrin repeat and coiled...
GLI2                  0.017   GLI-Kruppel family member GLI2 
LOC100290286          0.017   PREDICTED: hypothetical protein XP_002348149 
LOC100289204          0.017   PREDICTED: hypothetical protein XP_002343822 
STAB1                 0.017   stabilin 1 precursor 
LOC100129932          0.017   PREDICTED: hypothetical protein 
LOC100129932          0.017   PREDICTED: hypothetical protein 
LOC100129932          0.017   PREDICTED: hypothetical protein 
CARD10                0.017   caspase recruitment domain protein 10 
FAM108A1              0.017   hypothetical protein LOC81926 isoform 1 
UTY                   0.017   tetratricopeptide repeat protein isoform 3 
UTY                   0.017   tetratricopeptide repeat protein isoform 1 
UTY                   0.017   tetratricopeptide repeat protein isoform 2 
GLI1                  0.014   GLI family zinc finger 1 isoform 2 
GLI1                  0.014   GLI family zinc finger 1 isoform 1 
ZNF384                0.014   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.014   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.014   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.014   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.014   nuclear matrix transcription factor 4 isoform a [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press