Guide to the Human Genome
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Name: LOC100294029 Sequence: fasta or formatted (235aa) NCBI GI: 239757376
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         15           2
 C cysteine            1.3          3           1
 D aspartate           0.9          2           1
 E glutamate           3.0          7           1
 F phenylalanine       9.8         23           1
 G glycine             3.0          7           1
 H histidine           0.4          1           1
 I isoleucine          6.4         15           2
 K lysine              5.5         13           1
 L leucine            13.6         32           2
 M methionine          3.4          8           1
 N asparagine          4.7         11           2
 P proline             4.7         11           1
 Q glutamine           0.0          0           0
 R arginine            5.1         12           1
 S serine             14.0         33           2
 T threonine          11.5         27           1
 V valine              6.0         14           1
 W tryptophan          0.4          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130710          0.400   PREDICTED: hypothetical protein 
LOC100130710          0.400   PREDICTED: hypothetical protein 
LOC100129081          0.366   PREDICTED: hypothetical protein 
LOC100129081          0.366   PREDICTED: hypothetical protein 
LOC100129081          0.366   PREDICTED: hypothetical protein 
LOC100291794          0.300   PREDICTED: hypothetical protein XP_002345269 
LOC100290152          0.300   PREDICTED: hypothetical protein XP_002348038 
LOC100288507          0.300   PREDICTED: hypothetical protein XP_002343741 
LOC100290090          0.281   PREDICTED: hypothetical protein XP_002348037 
LOC100288446          0.281   PREDICTED: hypothetical protein XP_002343740 
LOC100291846          0.272   PREDICTED: hypothetical protein XP_002345270 
LOC100130710          0.246   PREDICTED: hypothetical protein 
LOC100290322          0.220   PREDICTED: hypothetical protein XP_002348039 
LOC100288722          0.220   PREDICTED: hypothetical protein XP_002343742 
LOC100291582          0.217   PREDICTED: hypothetical protein XP_002345268 
LOC100130667          0.035   PREDICTED: hypothetical protein 
LOC100130667          0.035   PREDICTED: hypothetical protein 
LOC100130667          0.035   PREDICTED: hypothetical protein 
OR10J5                0.012   olfactory receptor, family 10, subfamily J, member 5...
OR8G2                 0.012   olfactory receptor, family 8, subfamily G, member 2 ...
OR5AC2                0.012   olfactory receptor, family 5, subfamily AC, member 2...
OR4K15                0.007   olfactory receptor, family 4, subfamily K, member 15...
OR9K2                 0.007   olfactory receptor, family 9, subfamily K, member 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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