Guide to the Human Genome
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Name: LOC100129081 Sequence: fasta or formatted (265aa) NCBI GI: 239751895
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {265aa} PREDICTED: hypothetical protein
alt mRNA {265aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         17           2
 C cysteine            2.3          6           1
 D aspartate           1.1          3           1
 E glutamate           3.4          9           1
 F phenylalanine      12.1         32           1
 G glycine             4.2         11           1
 H histidine           1.5          4           1
 I isoleucine          5.7         15           2
 K lysine              5.3         14           2
 L leucine             8.7         23           2
 M methionine          3.4          9           1
 N asparagine          5.3         14           1
 P proline             8.3         22           1
 Q glutamine           0.8          2           1
 R arginine            3.8         10           1
 S serine             11.7         31           2
 T threonine           5.3         14           1
 V valine             10.2         27           3
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129081          1.000   PREDICTED: hypothetical protein 
LOC100129081          1.000   PREDICTED: hypothetical protein 
LOC100130710          0.419   PREDICTED: hypothetical protein 
LOC100130710          0.419   PREDICTED: hypothetical protein 
LOC100291794          0.357   PREDICTED: hypothetical protein XP_002345269 
LOC100290152          0.357   PREDICTED: hypothetical protein XP_002348038 
LOC100288507          0.357   PREDICTED: hypothetical protein XP_002343741 
LOC100290090          0.335   PREDICTED: hypothetical protein XP_002348037 
LOC100288446          0.335   PREDICTED: hypothetical protein XP_002343740 
LOC100291846          0.321   PREDICTED: hypothetical protein XP_002345270 
LOC100294029          0.309   PREDICTED: hypothetical protein 
LOC100130710          0.277   PREDICTED: hypothetical protein 
LOC100291582          0.134   PREDICTED: hypothetical protein XP_002345268 
LOC100290322          0.134   PREDICTED: hypothetical protein XP_002348039 
LOC100288722          0.134   PREDICTED: hypothetical protein XP_002343742 
LOC100130667          0.030   PREDICTED: hypothetical protein 
LOC100130667          0.030   PREDICTED: hypothetical protein 
LOC100130667          0.030   PREDICTED: hypothetical protein 
ZNF624                0.022   zinc finger protein 624 
ZNF615                0.020   zinc finger protein 615 
ZFP2                  0.018   zinc finger protein 2 homolog 
ZNF146                0.018   zinc finger protein 146 
ZNF146                0.018   zinc finger protein 146 
ZNF146                0.018   zinc finger protein 146 
ZNF391                0.018   zinc finger protein 391 
ZNF813                0.016   zinc finger protein 813 
ZNF569                0.016   zinc finger protein 569 
ZNF713                0.016   zinc finger protein 713 
ZFP37                 0.016   zinc finger protein 37 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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