Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 168823443
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|168823443 RAD54-like 2 [Homo sapiens]
(1467 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|168823443 RAD54-like 2 [Homo sapiens] 2955 0.0
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 504 e-142
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 504 e-142
gi|216548193 RAD54-like protein [Homo sapiens] 246 9e-65
gi|216548186 RAD54-like protein [Homo sapiens] 246 9e-65
gi|6912622 RAD54 homolog B [Homo sapiens] 234 4e-61
gi|4557565 excision repair cross-complementing rodent repair def... 210 9e-54
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 198 4e-50
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 181 6e-45
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 180 8e-45
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 157 7e-38
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 154 6e-37
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 154 6e-37
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 151 5e-36
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 139 3e-32
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 139 3e-32
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 123 1e-27
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 123 1e-27
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 123 1e-27
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 123 1e-27
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 123 1e-27
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 123 1e-27
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 123 1e-27
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 118 4e-26
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 114 7e-25
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 109 2e-23
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 107 1e-22
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 105 2e-22
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 105 3e-22
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 104 7e-22
>gi|168823443 RAD54-like 2 [Homo sapiens]
Length = 1467
Score = 2955 bits (7661), Expect = 0.0
Identities = 1467/1467 (100%), Positives = 1467/1467 (100%)
Query: 1 MSDESASGSDPDLDPDVELEDAEEEEEEEEVAVEECDRDDEEDLLDDPSLEGMCGTEHAQ 60
MSDESASGSDPDLDPDVELEDAEEEEEEEEVAVEECDRDDEEDLLDDPSLEGMCGTEHAQ
Sbjct: 1 MSDESASGSDPDLDPDVELEDAEEEEEEEEVAVEECDRDDEEDLLDDPSLEGMCGTEHAQ 60
Query: 61 LGEDGQQPPRCTSTTSSQSEPSEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLRED 120
LGEDGQQPPRCTSTTSSQSEPSEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLRED
Sbjct: 61 LGEDGQQPPRCTSTTSSQSEPSEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLRED 120
Query: 121 QLEPVTKAAQQEELERRKRLEQQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQ 180
QLEPVTKAAQQEELERRKRLEQQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQ
Sbjct: 121 QLEPVTKAAQQEELERRKRLEQQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQ 180
Query: 181 EVICLDSSSGSEDEKSSRDEVIELSSGEEDTLHIVDSSESVSEDDEEEEKGGTHVNDVLN 240
EVICLDSSSGSEDEKSSRDEVIELSSGEEDTLHIVDSSESVSEDDEEEEKGGTHVNDVLN
Sbjct: 181 EVICLDSSSGSEDEKSSRDEVIELSSGEEDTLHIVDSSESVSEDDEEEEKGGTHVNDVLN 240
Query: 241 QRDALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFG 300
QRDALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFG
Sbjct: 241 QRDALGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFG 300
Query: 301 CILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPAD 360
CILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPAD
Sbjct: 301 CILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPAD 360
Query: 361 NKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGR 420
NKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGR
Sbjct: 361 NKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGR 420
Query: 421 PKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALK 480
PKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALK
Sbjct: 421 PKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALK 480
Query: 481 NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQD 540
NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQD
Sbjct: 481 NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQD 540
Query: 541 VRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRD 600
VRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRD
Sbjct: 541 VRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRD 600
Query: 601 CGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQ 660
CGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQ
Sbjct: 601 CGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQ 660
Query: 661 GTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENS 720
GTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENS
Sbjct: 661 GTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENS 720
Query: 721 PKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNI 780
PKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNI
Sbjct: 721 PKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNI 780
Query: 781 SYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNP 840
SYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNP
Sbjct: 781 SYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNP 840
Query: 841 CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTR 900
CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTR
Sbjct: 841 CHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTR 900
Query: 901 KEVENLLHFVEKEPAPQVSLNVKGIKESVLQLACLKYPHLITKEPFEHESLLLNRKDHKL 960
KEVENLLHFVEKEPAPQVSLNVKGIKESVLQLACLKYPHLITKEPFEHESLLLNRKDHKL
Sbjct: 901 KEVENLLHFVEKEPAPQVSLNVKGIKESVLQLACLKYPHLITKEPFEHESLLLNRKDHKL 960
Query: 961 TKAEKKAAKKSYEEDKRTSVPYTRPSYAQYYPASDQSLTSIPAFSQRNWQPTLKGDEKPV 1020
TKAEKKAAKKSYEEDKRTSVPYTRPSYAQYYPASDQSLTSIPAFSQRNWQPTLKGDEKPV
Sbjct: 961 TKAEKKAAKKSYEEDKRTSVPYTRPSYAQYYPASDQSLTSIPAFSQRNWQPTLKGDEKPV 1020
Query: 1021 ASVRPVQSTPIPMMPRHVPLGGSVSSASSTNPSMNFPINYLQRAGVLVQKVVTTTDIVIP 1080
ASVRPVQSTPIPMMPRHVPLGGSVSSASSTNPSMNFPINYLQRAGVLVQKVVTTTDIVIP
Sbjct: 1021 ASVRPVQSTPIPMMPRHVPLGGSVSSASSTNPSMNFPINYLQRAGVLVQKVVTTTDIVIP 1080
Query: 1081 GLNSSTDVQARINAGESIHIIRGTKGTYIRTSDGRIFAVRATGKPKVPEDGRMAASGSQG 1140
GLNSSTDVQARINAGESIHIIRGTKGTYIRTSDGRIFAVRATGKPKVPEDGRMAASGSQG
Sbjct: 1081 GLNSSTDVQARINAGESIHIIRGTKGTYIRTSDGRIFAVRATGKPKVPEDGRMAASGSQG 1140
Query: 1141 PSCESTSNGRHSASSPKAPDPEGLARPVSPDSPEIISELQQYADVAAARESRQSSPSTNA 1200
PSCESTSNGRHSASSPKAPDPEGLARPVSPDSPEIISELQQYADVAAARESRQSSPSTNA
Sbjct: 1141 PSCESTSNGRHSASSPKAPDPEGLARPVSPDSPEIISELQQYADVAAARESRQSSPSTNA 1200
Query: 1201 ALPGPPAQLMDSSAVPGTALGTEPRLGGHCLNSSLLVTGQPCGDRHPVLDLRGHKRKLAT 1260
ALPGPPAQLMDSSAVPGTALGTEPRLGGHCLNSSLLVTGQPCGDRHPVLDLRGHKRKLAT
Sbjct: 1201 ALPGPPAQLMDSSAVPGTALGTEPRLGGHCLNSSLLVTGQPCGDRHPVLDLRGHKRKLAT 1260
Query: 1261 PPAAQESSRRRSRKGHLPAPVQPYEHGYPVSGGFAMPPVSLNHNLTTPFTSQAGENSLFM 1320
PPAAQESSRRRSRKGHLPAPVQPYEHGYPVSGGFAMPPVSLNHNLTTPFTSQAGENSLFM
Sbjct: 1261 PPAAQESSRRRSRKGHLPAPVQPYEHGYPVSGGFAMPPVSLNHNLTTPFTSQAGENSLFM 1320
Query: 1321 GSTPSYYQLSNLLADARLVFPVTTDPLVPAGPVSSSSTATSVTASNPSFMLNPSVPGILP 1380
GSTPSYYQLSNLLADARLVFPVTTDPLVPAGPVSSSSTATSVTASNPSFMLNPSVPGILP
Sbjct: 1321 GSTPSYYQLSNLLADARLVFPVTTDPLVPAGPVSSSSTATSVTASNPSFMLNPSVPGILP 1380
Query: 1381 SYSLPFSQPLLSEPRMFAPFPSPVLPSNLSRGMSIYPGYMSPHAGYPAGGLLRSQVPPFD 1440
SYSLPFSQPLLSEPRMFAPFPSPVLPSNLSRGMSIYPGYMSPHAGYPAGGLLRSQVPPFD
Sbjct: 1381 SYSLPFSQPLLSEPRMFAPFPSPVLPSNLSRGMSIYPGYMSPHAGYPAGGLLRSQVPPFD 1440
Query: 1441 SHEVAEVGFSSNDDEDKDDDVIEVTGK 1467
SHEVAEVGFSSNDDEDKDDDVIEVTGK
Sbjct: 1441 SHEVAEVGFSSNDDEDKDDDVIEVTGK 1467
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 504 bits (1297), Expect = e-142
Identities = 377/1162 (32%), Positives = 575/1162 (49%), Gaps = 194/1162 (16%)
Query: 3 DESASGSDPDLDPDVELEDAEEEEEEEEVAVEECDRD---DEEDLLDDPSLEGM--CGTE 57
DE+ S S P D + ++ E +++ +EE + DE+ DD EG G +
Sbjct: 1209 DEALSKSVPVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQ 1268
Query: 58 HAQLGEDGQQPPRCTSTTSSQSEPSEQLR------RHQGKNLASEDPKKKRAQKPSHMR- 110
+ + D + + S + S SE S++ R RH+ E ++K+ + H
Sbjct: 1269 NEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEV 1328
Query: 111 --RNIRKLLRED------QLEPVTKAAQQEELERRKRLEQQRKDYAAPIPTVPLEFLPEE 162
RN RK+ ED Q V++ + E E+R R +K E
Sbjct: 1329 KGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAEL-------------E 1375
Query: 163 IALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEVIELSSGEE------------- 209
R+ + R+ QE ++ S SE+E+ ++E E EE
Sbjct: 1376 ENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSP 1435
Query: 210 ------------DTLHIVDSSESVSEDDE------EEEKGGTHVNDVLNQRDA------- 244
D ++ ++ E++E E E+ + +V+ DA
Sbjct: 1436 GKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLREVIEIEDASPTKCPI 1495
Query: 245 LGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILA 304
+++++ + +E V + + +KPHQ+ G++F++D ES+++ K S G GCILA
Sbjct: 1496 TTKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILA 1555
Query: 305 HSMGLGKTLQVISFID--VLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNK 362
H MGLGKTLQV+SF+ +L T L + P+NT NW+ EF W E L D K
Sbjct: 1556 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKW---QEGLKDDEK 1612
Query: 363 PEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPK 422
E + K R+ ++ W +GGV+++GYEMYR L A GR
Sbjct: 1613 LEVSELATVK---------RPQERSYMLQRWQEDGGVMIIGYEMYRNL------AQGRNV 1657
Query: 423 KTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNI 482
K++K + F KAL PGPD V+CDEGH +KN ++ S+A+ +I
Sbjct: 1658 KSRK-----------------LKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSI 1700
Query: 483 RSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVR 542
RSRRR++LTG PLQNNLIEY CMV+F++ + LG+ +EF N F PI NGQC DST DVR
Sbjct: 1701 RSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVR 1760
Query: 543 LMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCG 602
+M+ R+H+L+ +L G VQR+ +T L LP K E V+ VR++ IQ LY ++D G
Sbjct: 1761 VMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVG 1820
Query: 603 SS-----GWLGLNPLKAFCVCCKIWNHPDVLY-------------EALQKESLANEQDLD 644
++ G G + F + +IW HP L E E +A++ D
Sbjct: 1821 NNSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMDEFIASDSDET 1880
Query: 645 VEELGSAGTSARCPPQGTKGKGEDSTLASSMG------EATNSKFLQGVGFNPFQERGNN 698
L S + + +G KGK + S+ S + NS+ +G G E GNN
Sbjct: 1881 SMSLSSDDYTKK-KKKGKKGKKDSSSSGSGSDNDVEVIKVWNSR-SRGGGEGNVDETGNN 1938
Query: 699 -------------------IVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDK 739
+W KD +T+ VLE+S KMVLLF ++ + ++GDK
Sbjct: 1939 PSVSLKLEESKATSSSNPSSPAPDWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDK 1998
Query: 740 ILVFSQSLSTLALIEEFLGKREVPCPPGTEG-------QGAQKWVRNISYFRLDGSTPAF 792
+LVFSQSL +L LIE+FL E+ TE +G KW+RNI Y+RLDGST A
Sbjct: 1999 VLVFSQSLISLDLIEDFL---ELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQ 2055
Query: 793 ERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYR 852
R++ +FND +N+ LF++ST+AG LG+NL+ ANRV++FDASWNP +D Q++ RVYR
Sbjct: 2056 SRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 2115
Query: 853 YGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHF--- 909
+GQ KP Y+YR +A T+E KIYDRQ++KQ +S RVVD +FT E+ L F
Sbjct: 2116 FGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2175
Query: 910 ---------VEKEPAPQVSLNVKGIKESVL-QLACLKYPHLITKEPFEHESLLLNRKDHK 959
+K P + K+++L +L + H++ EH+SLL ++++ +
Sbjct: 2176 LLDDPNSEKKKKRDTPMLP------KDTILAELLQIHKEHIVGYH--EHDSLLDHKEEEE 2227
Query: 960 LTKAEKKAAKKSYEEDKR-TSVPYTRPSYAQYYPASDQSLT--------SIPAFSQRNWQ 1010
LT+ E+KAA YE +K+ ++ + P+ P S S T ++ A S + +
Sbjct: 2228 LTEEERKAAWAEYEAEKKGLTMRFNIPTGTNLPPVSFNSQTPYIPFNLGALSAMSNQQLE 2287
Query: 1011 PTL-KGDEKPVASVRPVQSTPI 1031
+ +G EK V + V + I
Sbjct: 2288 DLINQGREKVVEATNSVTAVRI 2309
Score = 37.4 bits (85), Expect = 0.11
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 30/151 (19%)
Query: 1 MSDESASGSDPDLDPDVELEDAEEEEEEEEVAVEECDRDDEEDLLDDPSLEGMCGTEHAQ 60
+ ++S+S + + + + E ++ EEEEEEEE ++EED DD G + +
Sbjct: 1392 VQEDSSSENKSNSEEEEEEKEEEEEEEEEE-------EEEEEDENDDSKSPGKGRKKIRK 1444
Query: 61 LGEDGQQPPRCTSTTSSQSEPSEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLRED 120
+ +D ++LR L E+ ++KR + R +R+++ +
Sbjct: 1445 ILKD------------------DKLRTETQNALKEEEERRKRIAEREREREKLREVIEIE 1486
Query: 121 QLEP-----VTKAAQQEELERRKRLEQQRKD 146
P TK E+ E ++ L Q ++
Sbjct: 1487 DASPTKCPITTKLVLDEDEETKEPLVQVHRN 1517
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 504 bits (1297), Expect = e-142
Identities = 377/1162 (32%), Positives = 575/1162 (49%), Gaps = 194/1162 (16%)
Query: 3 DESASGSDPDLDPDVELEDAEEEEEEEEVAVEECDRD---DEEDLLDDPSLEGM--CGTE 57
DE+ S S P D + ++ E +++ +EE + DE+ DD EG G +
Sbjct: 1247 DEALSKSVPVTVDDDDDDNDPENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRTGKQ 1306
Query: 58 HAQLGEDGQQPPRCTSTTSSQSEPSEQLR------RHQGKNLASEDPKKKRAQKPSHMR- 110
+ + D + + S + S SE S++ R RH+ E ++K+ + H
Sbjct: 1307 NEENPGDEEAKNQVNSESDSDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEV 1366
Query: 111 --RNIRKLLRED------QLEPVTKAAQQEELERRKRLEQQRKDYAAPIPTVPLEFLPEE 162
RN RK+ ED Q V++ + E E+R R +K E
Sbjct: 1367 KGRNRRKVSSEDSEDSDFQESGVSEEVSESEDEQRPRTRSAKKAEL-------------E 1413
Query: 163 IALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEVIELSSGEE------------- 209
R+ + R+ QE ++ S SE+E+ ++E E EE
Sbjct: 1414 ENQRSYKQKKKRRRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSP 1473
Query: 210 ------------DTLHIVDSSESVSEDDE------EEEKGGTHVNDVLNQRDA------- 244
D ++ ++ E++E E E+ + +V+ DA
Sbjct: 1474 GKGRKKIRKILKDDKLRTETQNALKEEEERRKRIAEREREREKLREVIEIEDASPTKCPI 1533
Query: 245 LGRVLVNLNHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILA 304
+++++ + +E V + + +KPHQ+ G++F++D ES+++ K S G GCILA
Sbjct: 1534 TTKLVLDEDEETKEPLVQVHRNMVIKLKPHQVDGVQFMWDCCCESVKKTKKSPGSGCILA 1593
Query: 305 HSMGLGKTLQVISFID--VLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNK 362
H MGLGKTLQV+SF+ +L T L + P+NT NW+ EF W E L D K
Sbjct: 1594 HCMGLGKTLQVVSFLHTVLLCDKLDFSTALVVCPLNTALNWMNEFEKW---QEGLKDDEK 1650
Query: 363 PEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPK 422
E + K R+ ++ W +GGV+++GYEMYR L A GR
Sbjct: 1651 LEVSELATVK---------RPQERSYMLQRWQEDGGVMIIGYEMYRNL------AQGRNV 1695
Query: 423 KTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNI 482
K++K + F KAL PGPD V+CDEGH +KN ++ S+A+ +I
Sbjct: 1696 KSRK-----------------LKEIFNKALVDPGPDFVVCDEGHILKNEASAVSKAMNSI 1738
Query: 483 RSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVR 542
RSRRR++LTG PLQNNLIEY CMV+F++ + LG+ +EF N F PI NGQC DST DVR
Sbjct: 1739 RSRRRIILTGTPLQNNLIEYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTMVDVR 1798
Query: 543 LMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCG 602
+M+ R+H+L+ +L G VQR+ +T L LP K E V+ VR++ IQ LY ++D G
Sbjct: 1799 VMKKRAHILYEMLAGCVQRKDYTALTKFLPPKHEYVLAVRMTSIQCKLYQYYLDHLTGVG 1858
Query: 603 SS-----GWLGLNPLKAFCVCCKIWNHPDVLY-------------EALQKESLANEQDLD 644
++ G G + F + +IW HP L E E +A++ D
Sbjct: 1859 NNSEGGRGKAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMDEFIASDSDET 1918
Query: 645 VEELGSAGTSARCPPQGTKGKGEDSTLASSMG------EATNSKFLQGVGFNPFQERGNN 698
L S + + +G KGK + S+ S + NS+ +G G E GNN
Sbjct: 1919 SMSLSSDDYTKK-KKKGKKGKKDSSSSGSGSDNDVEVIKVWNSR-SRGGGEGNVDETGNN 1976
Query: 699 -------------------IVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDK 739
+W KD +T+ VLE+S KMVLLF ++ + ++GDK
Sbjct: 1977 PSVSLKLEESKATSSSNPSSPAPDWYKDFVTDADAEVLEHSGKMVLLFEILRMAEEIGDK 2036
Query: 740 ILVFSQSLSTLALIEEFLGKREVPCPPGTEG-------QGAQKWVRNISYFRLDGSTPAF 792
+LVFSQSL +L LIE+FL E+ TE +G KW+RNI Y+RLDGST A
Sbjct: 2037 VLVFSQSLISLDLIEDFL---ELASREKTEDKDKPLIYKGEGKWLRNIDYYRLDGSTTAQ 2093
Query: 793 ERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYR 852
R++ +FND +N+ LF++ST+AG LG+NL+ ANRV++FDASWNP +D Q++ RVYR
Sbjct: 2094 SRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFDASWNPSYDIQSIFRVYR 2153
Query: 853 YGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLNPMLNFTRKEVENLLHF--- 909
+GQ KP Y+YR +A T+E KIYDRQ++KQ +S RVVD +FT E+ L F
Sbjct: 2154 FGQTKPVYVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQVERHFTMNELTELYTFEPD 2213
Query: 910 ---------VEKEPAPQVSLNVKGIKESVL-QLACLKYPHLITKEPFEHESLLLNRKDHK 959
+K P + K+++L +L + H++ EH+SLL ++++ +
Sbjct: 2214 LLDDPNSEKKKKRDTPMLP------KDTILAELLQIHKEHIVGYH--EHDSLLDHKEEEE 2265
Query: 960 LTKAEKKAAKKSYEEDKR-TSVPYTRPSYAQYYPASDQSLT--------SIPAFSQRNWQ 1010
LT+ E+KAA YE +K+ ++ + P+ P S S T ++ A S + +
Sbjct: 2266 LTEEERKAAWAEYEAEKKGLTMRFNIPTGTNLPPVSFNSQTPYIPFNLGALSAMSNQQLE 2325
Query: 1011 PTL-KGDEKPVASVRPVQSTPI 1031
+ +G EK V + V + I
Sbjct: 2326 DLINQGREKVVEATNSVTAVRI 2347
Score = 37.4 bits (85), Expect = 0.11
Identities = 33/151 (21%), Positives = 65/151 (43%), Gaps = 30/151 (19%)
Query: 1 MSDESASGSDPDLDPDVELEDAEEEEEEEEVAVEECDRDDEEDLLDDPSLEGMCGTEHAQ 60
+ ++S+S + + + + E ++ EEEEEEEE ++EED DD G + +
Sbjct: 1430 VQEDSSSENKSNSEEEEEEKEEEEEEEEEE-------EEEEEDENDDSKSPGKGRKKIRK 1482
Query: 61 LGEDGQQPPRCTSTTSSQSEPSEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLRED 120
+ +D ++LR L E+ ++KR + R +R+++ +
Sbjct: 1483 ILKD------------------DKLRTETQNALKEEEERRKRIAEREREREKLREVIEIE 1524
Query: 121 QLEP-----VTKAAQQEELERRKRLEQQRKD 146
P TK E+ E ++ L Q ++
Sbjct: 1525 DASPTKCPITTKLVLDEDEETKEPLVQVHRN 1555
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 246 bits (629), Expect = 9e-65
Identities = 186/642 (28%), Positives = 293/642 (45%), Gaps = 145/642 (22%)
Query: 260 NVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFI 319
+V + P L++ ++PHQ G++FL+ E + + GCI+A MGLGKTLQ I+ +
Sbjct: 142 HVVVDPILSKVLRPHQREGVKFLW----ECVTSRRIPGSHGCIMADEMGLGKTLQCITLM 197
Query: 320 DVLFRHTPA-----KTVLAIVPVNTLQNWLAEFNMWLP---PPEALPADNKPEEVQPRFF 371
L R +P + + P + ++NW E WL P A+ +K E Q
Sbjct: 198 WTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQ---- 253
Query: 372 KVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPV 431
K+ ++ S +L++ YE +RL H
Sbjct: 254 KLEGFMNQRGARVSSP-----------ILIISYETFRL-------------------HVG 283
Query: 432 IIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLT 491
++ + +VICDEGHR+KN + T QAL ++ + RRV+++
Sbjct: 284 VLQ-------------------KGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLIS 324
Query: 492 GYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVL 551
G P+QN+L+EY+ +V FV LGT EF FE PIL G+ ++ D +L R L
Sbjct: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLREL 384
Query: 552 HSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGS--SGWLGL 609
S++ + RR +L +LP K E V+ RL+ +Q +LY +F+ + + G + +
Sbjct: 385 TSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSV 444
Query: 610 NPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDS 669
+ L + K+ NHP ++Y+ + EE G G PP G K +
Sbjct: 445 SSLSSITSLKKLCNHPALIYDKCVE-----------EEDGFVGALDLFPP-GYSSKALEP 492
Query: 670 TLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHL 729
L+ M +VL + L
Sbjct: 493 QLSGKM-----------------------------------------------LVLDYIL 505
Query: 730 IEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGST 789
+ DK+++ S TL L E+ R Y RLDG+
Sbjct: 506 AVTRSRSSDKVVLVSNYTQTLDLFEKLCR------------------ARRYLYVRLDGTM 547
Query: 790 PAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCR 849
+R +++ +FN PS+ ++F+LS++AG G+NLIGANR+V+FD WNP +D QA+ R
Sbjct: 548 SIKKRAKVVERFNSPSS-PDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 606
Query: 850 VYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 891
V+R GQKK CYIYRL++ T+E+KI+ RQ K+ +S VVD+
Sbjct: 607 VWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 246 bits (629), Expect = 9e-65
Identities = 186/642 (28%), Positives = 293/642 (45%), Gaps = 145/642 (22%)
Query: 260 NVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFI 319
+V + P L++ ++PHQ G++FL+ E + + GCI+A MGLGKTLQ I+ +
Sbjct: 142 HVVVDPILSKVLRPHQREGVKFLW----ECVTSRRIPGSHGCIMADEMGLGKTLQCITLM 197
Query: 320 DVLFRHTPA-----KTVLAIVPVNTLQNWLAEFNMWLP---PPEALPADNKPEEVQPRFF 371
L R +P + + P + ++NW E WL P A+ +K E Q
Sbjct: 198 WTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKWLGGRIQPLAIDGGSKDEIDQ---- 253
Query: 372 KVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPV 431
K+ ++ S +L++ YE +RL H
Sbjct: 254 KLEGFMNQRGARVSSP-----------ILIISYETFRL-------------------HVG 283
Query: 432 IIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLT 491
++ + +VICDEGHR+KN + T QAL ++ + RRV+++
Sbjct: 284 VLQ-------------------KGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRVLIS 324
Query: 492 GYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVL 551
G P+QN+L+EY+ +V FV LGT EF FE PIL G+ ++ D +L R L
Sbjct: 325 GTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERLREL 384
Query: 552 HSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGS--SGWLGL 609
S++ + RR +L +LP K E V+ RL+ +Q +LY +F+ + + G + +
Sbjct: 385 TSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSV 444
Query: 610 NPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDS 669
+ L + K+ NHP ++Y+ + EE G G PP G K +
Sbjct: 445 SSLSSITSLKKLCNHPALIYDKCVE-----------EEDGFVGALDLFPP-GYSSKALEP 492
Query: 670 TLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHL 729
L+ M +VL + L
Sbjct: 493 QLSGKM-----------------------------------------------LVLDYIL 505
Query: 730 IEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGST 789
+ DK+++ S TL L E+ R Y RLDG+
Sbjct: 506 AVTRSRSSDKVVLVSNYTQTLDLFEKLCR------------------ARRYLYVRLDGTM 547
Query: 790 PAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCR 849
+R +++ +FN PS+ ++F+LS++AG G+NLIGANR+V+FD WNP +D QA+ R
Sbjct: 548 SIKKRAKVVERFNSPSS-PDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMAR 606
Query: 850 VYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDD 891
V+R GQKK CYIYRL++ T+E+KI+ RQ K+ +S VVD+
Sbjct: 607 VWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDE 648
>gi|6912622 RAD54 homolog B [Homo sapiens]
Length = 910
Score = 234 bits (598), Expect = 4e-61
Identities = 183/659 (27%), Positives = 306/659 (46%), Gaps = 143/659 (21%)
Query: 260 NVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFI 319
+V + P L ++PHQ GI FLY E + + + G ILA MGLGKTLQ IS I
Sbjct: 285 DVVIDPYLVYHLRPHQKEGIIFLY----ECVMGMRMNGRCGAILADEMGLGKTLQCISLI 340
Query: 320 DVLFRHTP------AKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKV 373
L P K L + P + + NW EF WL K+
Sbjct: 341 WTLQCQGPYGGKPVIKKTLIVTPGSLVNNWKKEFQKWLGSER---------------IKI 385
Query: 374 HILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVII 433
++ +HK + VL++ YEM ++
Sbjct: 386 FTVDQDHKVEEFIKSIFYS------VLIISYEM------------------------LLR 415
Query: 434 DLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGY 493
LD+ + +F D++ICDEGHR+KN T+ AL ++ +R++LTG
Sbjct: 416 SLDQI-KNIKF-------------DLLICDEGHRLKNSAIKTTTALISLSCEKRIILTGT 461
Query: 494 PLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHS 553
P+QN+L E++ ++DFV P LG+ + ++E PI+ + ++ ++ L R+ L
Sbjct: 462 PIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREPSASEEEKELGERRAAELTC 521
Query: 554 LLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDR--FRDCGSSGWLGLNP 611
L F+ RR ++ +LP K ENV+ R +Q +LY + ++ R C G L +P
Sbjct: 522 LTGLFILRRTQEIINKYLPPKIENVVFCRPGALQIELYRKLLNSQVVRFC-LQGLLENSP 580
Query: 612 LKAFCVCC--KIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDS 669
C+ K+ NHP +L+ +++++ ++ D + E+ G + P
Sbjct: 581 -HLICIGALKKLCNHPCLLFNSIKEKECSSTCDKNEEKSLYKGLLSVFPAD--------- 630
Query: 670 TLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHL 729
+NP L T ++G L+ K++ + H
Sbjct: 631 -------------------YNPL---------------LFTEKESGKLQVLSKLLAVIHE 656
Query: 730 IEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGST 789
+ + +K+++ S TL +++E + +Y RLDG T
Sbjct: 657 LRPT----EKVVLVSNYTQTLNILQEVCKRH------------------GYAYTRLDGQT 694
Query: 790 PAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCR 849
P +R+++++ FN + + ++FLLS++AG +G+NLIG + ++++D WNP D QA+ R
Sbjct: 695 PISQRQQIVDGFNSQHS-SFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSR 753
Query: 850 VYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD--DLNPMLNFTRKEVENL 906
V+R GQK P +IYRL+ T+E+KIY RQISKQG+ VVD + + F+ +E++NL
Sbjct: 754 VWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVVDLTKTSEHIQFSVEELKNL 812
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 210 bits (534), Expect = 9e-54
Identities = 172/610 (28%), Positives = 263/610 (43%), Gaps = 165/610 (27%)
Query: 300 GCILAHSMGLGKTLQVISFIDVL-----------FRHTPAKTVLAIVPVNTLQNWLAEFN 348
G IL MGLGKT+Q+I+F+ L +R + + P + W+ EF+
Sbjct: 527 GGILGDEMGLGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFH 586
Query: 349 MWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYR 408
W PP F+V IL++ + K++ D G+L+ Y R
Sbjct: 587 TWWPP-----------------FRVAILHETGSYTHKKEKLIRDVAHCHGILITSYSYIR 629
Query: 409 LLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRI 468
L+ + + R VI DEGH+I
Sbjct: 630 LM--------------------------------------QDDISRYDWHYVILDEGHKI 651
Query: 469 KNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPI 528
+N A+ + A K R+ R++L+G P+QNNL E W + DF+ P LGT F F PI
Sbjct: 652 RNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPI 711
Query: 529 LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLK--IHLPAKEENVILVRLSKI 586
G +++P V+ + VL + ++ RR + +K + LP K E V+ RL+
Sbjct: 712 TMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDE 771
Query: 587 QRDLYTQFMD-----RFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESLANEQ 641
Q +Y F+D R + + GL L+ C NHPD
Sbjct: 772 QHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKIC------NHPD--------------- 810
Query: 642 DLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGNNIVT 701
L S G P+ KG +D G + +R ++
Sbjct: 811 ------LFSGG------PKNLKGLPDDELEEDQFG---------------YWKRSGKMIV 843
Query: 702 YEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRE 761
E ++ ++H K G ++L+FSQS L ++E FL
Sbjct: 844 VE------------------SLLKIWH------KQGQRVLLFSQSRQMLDILEVFL---- 875
Query: 762 VPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCL 821
AQK+ +Y ++DG+T R+ LI ++N+ +++ ++FLL+TR G L
Sbjct: 876 ----------RAQKY----TYLKMDGTTTIASRQPLITRYNEDTSI--FVFLLTTRVGGL 919
Query: 822 GVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISK 881
GVNL GANRVV++D WNP D QA R +R GQKK +YRL+ T+E+KIY RQI K
Sbjct: 920 GVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFK 979
Query: 882 QGMSDRVVDD 891
Q +++RV+ D
Sbjct: 980 QFLTNRVLKD 989
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 198 bits (503), Expect = 4e-50
Identities = 217/858 (25%), Positives = 360/858 (41%), Gaps = 169/858 (19%)
Query: 111 RNIRKLLREDQLEP---VTKAAQQEELERRKRLEQQRKDYAAPIPTVPLEFLPEEIALRA 167
R ++ LL + + +TK QQ+ E++K+ + +RK E L + +
Sbjct: 66 RRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKK----------ESLKVKKGKNS 115
Query: 168 SDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEVIELSSGEEDTLHIVDSSESVSEDDEE 227
D + P + G EDE + EV+ +E+ L + ++ +ED E
Sbjct: 116 IDASEEKP--------VMRKKRGREDESYNISEVMS----KEEILSVAKKNKKENED-EN 162
Query: 228 EEKGGTHVNDVLNQRDALGRVLVNLNHPPEEENVFLAPQLARA--------VKPHQIGGI 279
V D+ +D+ + L+ + F + + H GG+
Sbjct: 163 SSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGV 222
Query: 280 RFLYDNLVESLE--RFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIVPV 337
Y VE +E R +G ILA MGLGKT+Q I+ I ++ + L P+
Sbjct: 223 MRWYQ--VEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPL 280
Query: 338 NTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEG 397
+TL NW+AEF + P ++ + H T R K++ +
Sbjct: 281 STLPNWMAEFKRFTP------------DIPTMLY--------HGTQEERQKLVRNIYKRK 320
Query: 398 GVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGP 457
G L + HPV+I E AL
Sbjct: 321 GTLQI--------------------------HPVVIT------SFEIAMRDRNALQHCYW 348
Query: 458 DVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTR 517
+I DEGHRIKN + + LK + +++LTG PLQNNL E W +++F+ PD
Sbjct: 349 KYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDL 408
Query: 518 QEFSNMFERPILNGQCIDSTPQDVRLMRYRS---HVLHSLLEGFVQRRGHTVLKIHLPAK 574
+ F + F+ L+ T +D+ H+LH +L F+ RR + + + +P K
Sbjct: 409 KSFESWFDITSLS-----ETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPK 463
Query: 575 EENVILVRLSKIQRDLYTQFMDRF--RDCGSSG--WLGLNPL-------KAFCVCCKIWN 623
E V+ LSK Q YT ++R GSS + L+P + KI +
Sbjct: 464 REVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDD 523
Query: 624 HPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKF 683
P+ L + + + +++ V E+ P ++ + + + + N +
Sbjct: 524 FPNELEKLISQIQPEVDRERAVVEVNI--------PVESEVNLKLQNIMMLLRKCCNHPY 575
Query: 684 LQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVF 743
L +P VT E+ D ++ NS K ++L ++ E K G K+L+F
Sbjct: 576 LIEYPIDP--------VTQEFKID------EELVTNSGKFLILDRMLPELKKRGHKVLLF 621
Query: 744 SQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFN- 802
SQ S L ++ ++ +R+ ++ RLDGS ERE+ ++ FN
Sbjct: 622 SQMTSMLDILMDYCH------------------LRDFNFSRLDGSMSYSEREKNMHSFNT 663
Query: 803 DPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIY 862
DP ++FL+STRAG LG+NL A+ V+++D+ WNP D QA R +R GQ KP +Y
Sbjct: 664 DPE---VFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY 720
Query: 863 RLVADYTLEKKIYDRQISKQGMSDRVV---------DDLNPMLNF-TRKEVENLLHFVEK 912
RLV T+++KI +R +K+ + ++ LN NF KE+ LL +
Sbjct: 721 RLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY 780
Query: 913 EPAPQVSLNVKGIKESVL 930
E +KG +E V+
Sbjct: 781 E------REIKGSREKVI 792
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 181 bits (458), Expect = 6e-45
Identities = 181/676 (26%), Positives = 281/676 (41%), Gaps = 164/676 (24%)
Query: 261 VFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFID 320
+ L +L + HQ GI FLY SL R G ILA MGLGKT+Q+I+F+
Sbjct: 86 LLLYRELHNQLFEHQKEGIAFLY-----SLYRDGRKGG---ILADDMGLGKTVQIIAFLS 137
Query: 321 VLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEH 380
+F + VL I+P N + W+ EF W P + + P + DE
Sbjct: 138 GMFDASLVNHVLLIMPTNLINTWVKEFIKWT-PGMRVKTFHGPSK------------DER 184
Query: 381 KTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDR 440
+R + GV++ Y+M ++ +
Sbjct: 185 TRNLNRIQ------QRNGVIITTYQML---------------------------INNWQQ 211
Query: 441 QQEFR-REFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNL 499
FR +EF D VI DE H+IK ++ + I + R++LTG P+QNNL
Sbjct: 212 LSSFRGQEFVW-------DYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNL 264
Query: 500 IEYWCMVDFV-RPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGF 558
E W + DF + LGT + F +E PI + D+TP + L S L ++++ +
Sbjct: 265 QELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPY 324
Query: 559 VQRRGHTVLKIH------------------------LPAKEENVILVRLSKIQRDLYTQF 594
RR ++ L K + +I +RL +Q ++Y +F
Sbjct: 325 FLRRTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKF 384
Query: 595 --MDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAG 652
+D ++ +PL V K+ +HP +L + + L N ++
Sbjct: 385 VSLDHIKELLMET---RSPLAELGVLKKLCDHPRLL--SARACCLLNLGTFSAQD----- 434
Query: 653 TSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNY 712
+GEDS + + T+
Sbjct: 435 ----------GNEGEDSPDVDHIDQVTDDT------------------------------ 454
Query: 713 QTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQG 772
++E S KM+ L L++ G + LVFSQS L +IE L R
Sbjct: 455 ---LMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNR------------ 499
Query: 773 AQKWVRNISYFRLDGS-TPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRV 831
+ R+DG+ T ERE+ IN F + + +FLL+T+ G +G+ L A RV
Sbjct: 500 ------HFKTLRIDGTVTHLLEREKRINLFQQNKDYS--VFLLTTQVGGVGLTLTAATRV 551
Query: 832 VVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVV-D 890
V+FD SWNP DAQAV RVYR GQK+ +YRL+ T+E+KIY RQ+ K + + +
Sbjct: 552 VIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGE 611
Query: 891 DLNPMLNFTRKEVENL 906
NP F+++E+ L
Sbjct: 612 KKNPFRYFSKQELREL 627
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 180 bits (457), Expect = 8e-45
Identities = 176/642 (27%), Positives = 275/642 (42%), Gaps = 119/642 (18%)
Query: 269 RAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPA 328
R ++ +Q G RFLY + + G GCIL MGLGKT+QVISF+ +
Sbjct: 132 RYLRDYQREGTRFLYGHYIH---------GGGCILGDDMGLGKTVQVISFLAAVLHKKGT 182
Query: 329 KTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAK 388
+ + E NM PE L K E + K+ ++ +
Sbjct: 183 REDI-------------ENNM----PEFLLRSMKKEPLSSTAKKMFLI-------VAPLS 218
Query: 389 VMADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREF 448
V+ +W E L + +R+ L + + K+R + + E R
Sbjct: 219 VLYNWKDE----LDTWGYFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLR-------- 266
Query: 449 EKALCRPGPD-----VVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYW 503
LC + VI DE HRIKN +A ++ +K ++ R+ LTG LQNN+ E W
Sbjct: 267 ---LCLDELNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELW 323
Query: 504 CMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRG 563
C++D+ P LG+ F F P+ +GQ +T +++ R L + G+ RR
Sbjct: 324 CVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRT 383
Query: 564 HTVLKIHLPAKEENVILVRLSKIQRDLY---------TQFMDRFRDCGS-SGWLGLNPLK 613
T++K LP KE+ ++ L+ Q+ +Y T + C SG N
Sbjct: 384 KTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRRN--- 440
Query: 614 AFCVCCKIWNHPDVLYEALQKESLANEQDL--DVEELGSAGTSARCPPQGTKGKGEDSTL 671
CC N + L L Q + V L +A TS + TL
Sbjct: 441 ----CCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAASTSK-----------QQETL 485
Query: 672 ASSMGEATNSKFLQGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIE 731
+ + S+F P + + +E D + S KM +L L+
Sbjct: 486 IKRICDQVFSRF-------PDFVQKSKDAAFETLSDP---------KYSGKMKVLQQLLN 529
Query: 732 ESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPA 791
K DK+L+FS S L +++++ + Y RLDGST +
Sbjct: 530 HCRKNRDKVLLFSFSTKLLDVLQQYC------------------MASGLDYRRLDGSTKS 571
Query: 792 FERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVY 851
ER +++ +FN ++ + L+ST AG LG+N +GAN VV+FD +WNP +D QA+ R Y
Sbjct: 572 EERLKIVKEFNSTQDVN--ICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAY 629
Query: 852 RYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 893
R GQ + + RL++ T+E+ +Y RQI KQ + VV N
Sbjct: 630 RIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSEN 671
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 157 bits (397), Expect = 7e-38
Identities = 154/608 (25%), Positives = 256/608 (42%), Gaps = 119/608 (19%)
Query: 270 AVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPAK 329
++KP+Q G+ +L LV G ILA MGLGKT+Q I+F+ L++
Sbjct: 496 SLKPYQKVGLNWLA--LVHK-------HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNG 546
Query: 330 TVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAKV 389
L +VP +T+ NWL E N+W P + L EE + F +H SR
Sbjct: 547 PHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIH----------SR--- 593
Query: 390 MADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFE 449
YE Y ++ + A + D + FRR
Sbjct: 594 --------------YEDYNVIVTTYNCA-----------------ISSSDDRSLFRRL-- 620
Query: 450 KALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFV 509
+ I DEGH +KN + Q L I + R++LTG P+QNNL+E +++FV
Sbjct: 621 ------KLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFV 674
Query: 510 RPD-FLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHS--LLEGFVQRRGHTV 566
P F + E MF + D + + + + H+ +++ F+ RR
Sbjct: 675 MPHMFSSSTSEIRRMFSSKTKSA--------DEQSIYEKERIAHAKQIIKPFILRRVKEE 726
Query: 567 LKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPD 626
+ LP K++ + L +S+ Q LY +R + ++ K+ NHP
Sbjct: 727 VLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPL 786
Query: 627 VLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQG 686
+ + E L L ++E T + + M T+ +
Sbjct: 787 LHRQYYTAEKLKEMSQLMLKE-------------PTHCEANPDLIFEDMEVMTDFEL--- 830
Query: 687 VGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQS 746
+ ++ +I ++ DL+ + S K +L ++ E + GD++++FSQ
Sbjct: 831 ---HVLCKQYRHINNFQLDMDLILD--------SGKFRVLGCILSELKQKGDRVVLFSQF 879
Query: 747 LSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSN 806
L ++E L + Y RLDG T ER LI++FN ++
Sbjct: 880 TMMLDILEVLLKHHQH------------------RYLRLDGKTQISERIHLIDEFN--TD 919
Query: 807 LTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVA 866
+ ++FLLST+AG LG+NL AN V++ D NP +D QA R +R GQ K + +L++
Sbjct: 920 MDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLIS 979
Query: 867 DYTLEKKI 874
T+E+ +
Sbjct: 980 QGTIEESM 987
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 154 bits (389), Expect = 6e-37
Identities = 155/610 (25%), Positives = 257/610 (42%), Gaps = 121/610 (19%)
Query: 270 AVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPAK 329
++KP+Q G+ +L LV G ILA MGLGKT+Q I+F+ L++
Sbjct: 496 SLKPYQKVGLNWLA--LVHK-------HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNG 546
Query: 330 TVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAKV 389
L +VP +T+ NWL E N+W P + L EE + F +H SR
Sbjct: 547 PHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIH----------SR--- 593
Query: 390 MADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFE 449
YE Y ++ + A + D + FRR
Sbjct: 594 --------------YEDYNVIVTTYNCA-----------------ISSSDDRSLFRRL-- 620
Query: 450 KALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFV 509
+ I DEGH +KN + Q L I + R++LTG P+QNNL+E +++FV
Sbjct: 621 ------KLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFV 674
Query: 510 RPD-FLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHS--LLEGFVQRRGHTV 566
P F + E MF + D + + + + H+ +++ F+ RR
Sbjct: 675 MPHMFSSSTSEIRRMFSSKTKSA--------DEQSIYEKERIAHAKQIIKPFILRRVKEE 726
Query: 567 LKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNP--LKAFCVCCKIWNH 624
+ LP K++ + L +S+ Q LY +R + ++ N K+ NH
Sbjct: 727 VLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANH 786
Query: 625 PDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFL 684
P + + E L L ++E T + + M T+ +
Sbjct: 787 PLLHRQYYTAEKLKEMSQLMLKE-------------PTHCEANPDLIFEDMEVMTDFEL- 832
Query: 685 QGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFS 744
+ ++ +I ++ DL+ + S K +L ++ E + GD++++FS
Sbjct: 833 -----HVLCKQYRHINNFQLDMDLILD--------SGKFRVLGCILSELKQKGDRVVLFS 879
Query: 745 QSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDP 804
Q L ++E L + Y RLDG T ER LI++FN
Sbjct: 880 QFTMMLDILEVLLKHHQH------------------RYLRLDGKTQISERIHLIDEFN-- 919
Query: 805 SNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRL 864
+++ ++FLLST+AG LG+NL AN V++ D NP +D QA R +R GQ K + +L
Sbjct: 920 TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 979
Query: 865 VADYTLEKKI 874
++ T+E+ +
Sbjct: 980 ISQGTIEESM 989
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 154 bits (389), Expect = 6e-37
Identities = 155/610 (25%), Positives = 257/610 (42%), Gaps = 121/610 (19%)
Query: 270 AVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPAK 329
++KP+Q G+ +L LV G ILA MGLGKT+Q I+F+ L++
Sbjct: 496 SLKPYQKVGLNWLA--LVHK-------HGLNGILADEMGLGKTIQAIAFLAYLYQEGNNG 546
Query: 330 TVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAKV 389
L +VP +T+ NWL E N+W P + L EE + F +H SR
Sbjct: 547 PHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIH----------SR--- 593
Query: 390 MADWVSEGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFE 449
YE Y ++ + A + D + FRR
Sbjct: 594 --------------YEDYNVIVTTYNCA-----------------ISSSDDRSLFRRL-- 620
Query: 450 KALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFV 509
+ I DEGH +KN + Q L I + R++LTG P+QNNL+E +++FV
Sbjct: 621 ------KLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFV 674
Query: 510 RPD-FLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHS--LLEGFVQRRGHTV 566
P F + E MF + D + + + + H+ +++ F+ RR
Sbjct: 675 MPHMFSSSTSEIRRMFSSKTKSA--------DEQSIYEKERIAHAKQIIKPFILRRVKEE 726
Query: 567 LKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNP--LKAFCVCCKIWNH 624
+ LP K++ + L +S+ Q LY +R + ++ N K+ NH
Sbjct: 727 VLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANH 786
Query: 625 PDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFL 684
P + + E L L ++E T + + M T+ +
Sbjct: 787 PLLHRQYYTAEKLKEMSQLMLKE-------------PTHCEANPDLIFEDMEVMTDFEL- 832
Query: 685 QGVGFNPFQERGNNIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFS 744
+ ++ +I ++ DL+ + S K +L ++ E + GD++++FS
Sbjct: 833 -----HVLCKQYRHINNFQLDMDLILD--------SGKFRVLGCILSELKQKGDRVVLFS 879
Query: 745 QSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDP 804
Q L ++E L + Y RLDG T ER LI++FN
Sbjct: 880 QFTMMLDILEVLLKHHQH------------------RYLRLDGKTQISERIHLIDEFN-- 919
Query: 805 SNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRL 864
+++ ++FLLST+AG LG+NL AN V++ D NP +D QA R +R GQ K + +L
Sbjct: 920 TDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKL 979
Query: 865 VADYTLEKKI 874
++ T+E+ +
Sbjct: 980 ISQGTIEESM 989
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 151 bits (381), Expect = 5e-36
Identities = 131/486 (26%), Positives = 211/486 (43%), Gaps = 88/486 (18%)
Query: 426 KRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSR 485
KR + ++ D +F R + C I DEGH IKN + S+A+K + +
Sbjct: 1374 KRHNLIVASYDVVRNDIDFFRNIKFNYC-------ILDEGHVIKNGKTKLSKAVKQLTAN 1426
Query: 486 RRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMR 545
R++L+G P+QNN++E W + DF+ P FLGT ++F+ + +PIL + S+ ++
Sbjct: 1427 YRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGV 1486
Query: 546 YRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRDCGSSG 605
LH + F+ RR +E+V+ KI +D Y
Sbjct: 1487 LAMDALHRQVLPFLLRR-----------MKEDVLQDLPPKIIQDYYCT------------ 1523
Query: 606 WLGLNPLKAFCVCCKIWNHPDVLYEALQKESLANEQDLDVEELGSAGTSARCPPQGTKGK 665
L+PL+ LYE K + D E + SA S K
Sbjct: 1524 ---LSPLQV------------QLYEDFAKSRAKCDVD---ETVSSATLSEETEKPKLKAT 1565
Query: 666 GEDSTLASSMGEATNSKFLQGVGFNP-FQERGNNIVTYEWAKDLLTNYQTGVLENSPKMV 724
G + + N L +P F+ + + N ++++PK+
Sbjct: 1566 GHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLA--------VQNSSLHDIQHAPKLS 1617
Query: 725 LLFHLI--------------EESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEG 770
L L+ ESV +IL+F Q S L ++E L K +P
Sbjct: 1618 ALKQLLLDCGLGNGSTSESGTESVVAQHRILIFCQLKSMLDIVEHDLLKPHLP------- 1670
Query: 771 QGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANR 830
+++Y RLDGS P +R ++++FN+ ++ + LL+T G LG+NL GA+
Sbjct: 1671 --------SVTYLRLDGSIPPGQRHSIVSRFNNDPSID--VLLLTTHVGGLGLNLTGADT 1720
Query: 831 VVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVD 890
VV + WNP D QA+ R +R GQK+ +YRL+ TLE+KI Q K +++ V+
Sbjct: 1721 VVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVIS 1780
Query: 891 DLNPML 896
N L
Sbjct: 1781 QENSSL 1786
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 139 bits (349), Expect = 3e-32
Identities = 119/445 (26%), Positives = 199/445 (44%), Gaps = 103/445 (23%)
Query: 460 VICDEGHRIKNCQASTSQALK-NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
+I DEGHR+KN +Q L + + RR++LTG PLQN L E W +++F+ P +
Sbjct: 848 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 907
Query: 519 EFSNMFERPI-LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
F F P + G+ +D ++ L+ R LH +L F+ RR ++ LP K E
Sbjct: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRPFLLRRLKKEVESQLPEKVEY 964
Query: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESL 637
VI +S +Q+ +LY +Q + +
Sbjct: 965 VIKCDMSALQK--------------------------------------ILYRHMQAKGI 986
Query: 638 ANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGN 697
+ ++ KGKG TL +++ + L+ + +P+ +
Sbjct: 987 LLTDGSEKDK---------------KGKGGAKTLMNTIMQ------LRKICNHPYMFQH- 1024
Query: 698 NIVTYEWAKDLLTNYQTGVLEN------SPKMVLLFHLIEESVKLGDKILVFSQSLSTLA 751
+ +A+ L Y GV+ S K LL ++ + ++L+F Q S +
Sbjct: 1025 --IEESFAEHL--GYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080
Query: 752 LIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWL 811
++E++ RN Y RLDG+T + +R L+ +FN+P + ++
Sbjct: 1081 IMEDYFA------------------FRNFLYLRLDGTTKSEDRAALLKKFNEPGS-QYFI 1121
Query: 812 FLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLE 871
FLLSTRAG LG+NL A+ VV+FD+ WNP D QA R +R GQ+ + RL ++E
Sbjct: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
Query: 872 KKI---------YDRQISKQGMSDR 887
+KI D+++ + GM D+
Sbjct: 1182 EKILAAAKYKLNVDQKVIQAGMFDQ 1206
Score = 64.3 bits (155), Expect = 8e-10
Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 38/277 (13%)
Query: 88 HQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLEQQRKDY 147
H+ A E K++R +K + + EP+ +++Q +L + + K
Sbjct: 547 HKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVL 606
Query: 148 AAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEVIELSSG 207
P + + L + G ++ PR ++E D E+E+SSR E
Sbjct: 607 FGPEAPKASQL---DAWLEMNPGYEVAPRSDSEESDS-DYEEEDEEEESSRQET------ 656
Query: 208 EEDTLHIVDSSESVSEDDEEE--EKGGTHVNDVLN-QRDALGR-----VLVNLNHPPEEE 259
E+ + + +SE VSE D ++ E V+D + Q A G V ++ E++
Sbjct: 657 -EEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQ 715
Query: 260 NVFLAPQLARAVKPHQIGGIRF---LYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVI 316
+ L + +K +Q+ G+ + LY+N + ILA MGLGKT+Q I
Sbjct: 716 SALL---INGTLKHYQLQGLEWMVSLYNNNLNG------------ILADEMGLGKTIQTI 760
Query: 317 SFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLP 352
+ I L H L IVP++TL NW EF+ W P
Sbjct: 761 ALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAP 797
Score = 33.9 bits (76), Expect = 1.2
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 1 MSDESASGSDPDLDPDVELEDAEEEEEEEEVAVEE------CDRDDEEDLLDDPSLEGMC 54
M D+ +S + LE EE EEE+EV +E R++E DL ++
Sbjct: 1203 MFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMD--- 1259
Query: 55 GTEHAQLGEDGQQPPRCTSTTSSQSEPSEQLRRH-QGKNLASEDPKKKRAQKPSHMRRNI 113
+ ED + P R PS ++ + + L E+ ++K + S RR++
Sbjct: 1260 -----RRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDV 1314
Query: 114 --RKLLREDQLEPVTKAAQQEELERRKRLEQQRK 145
L E Q + EE+E RL+++++
Sbjct: 1315 DYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKR 1348
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 139 bits (349), Expect = 3e-32
Identities = 119/445 (26%), Positives = 199/445 (44%), Gaps = 103/445 (23%)
Query: 460 VICDEGHRIKNCQASTSQALK-NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
+I DEGHR+KN +Q L + + RR++LTG PLQN L E W +++F+ P +
Sbjct: 848 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCS 907
Query: 519 EFSNMFERPI-LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
F F P + G+ +D ++ L+ R LH +L F+ RR ++ LP K E
Sbjct: 908 TFEQWFNAPFAMTGERVDLNEEETILIIRR---LHKVLRPFLLRRLKKEVESQLPEKVEY 964
Query: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESL 637
VI +S +Q+ +LY +Q + +
Sbjct: 965 VIKCDMSALQK--------------------------------------ILYRHMQAKGI 986
Query: 638 ANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGN 697
+ ++ KGKG TL +++ + L+ + +P+ +
Sbjct: 987 LLTDGSEKDK---------------KGKGGAKTLMNTIMQ------LRKICNHPYMFQH- 1024
Query: 698 NIVTYEWAKDLLTNYQTGVLEN------SPKMVLLFHLIEESVKLGDKILVFSQSLSTLA 751
+ +A+ L Y GV+ S K LL ++ + ++L+F Q S +
Sbjct: 1025 --IEESFAEHL--GYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMT 1080
Query: 752 LIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWL 811
++E++ RN Y RLDG+T + +R L+ +FN+P + ++
Sbjct: 1081 IMEDYFA------------------FRNFLYLRLDGTTKSEDRAALLKKFNEPGS-QYFI 1121
Query: 812 FLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLE 871
FLLSTRAG LG+NL A+ VV+FD+ WNP D QA R +R GQ+ + RL ++E
Sbjct: 1122 FLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVE 1181
Query: 872 KKI---------YDRQISKQGMSDR 887
+KI D+++ + GM D+
Sbjct: 1182 EKILAAAKYKLNVDQKVIQAGMFDQ 1206
Score = 64.3 bits (155), Expect = 8e-10
Identities = 72/277 (25%), Positives = 120/277 (43%), Gaps = 38/277 (13%)
Query: 88 HQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLEQQRKDY 147
H+ A E K++R +K + + EP+ +++Q +L + + K
Sbjct: 547 HKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSDLPVKVTHTETGKVL 606
Query: 148 AAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEVIELSSG 207
P + + L + G ++ PR ++E D E+E+SSR E
Sbjct: 607 FGPEAPKASQL---DAWLEMNPGYEVAPRSDSEESDS-DYEEEDEEEESSRQET------ 656
Query: 208 EEDTLHIVDSSESVSEDDEEE--EKGGTHVNDVLN-QRDALGR-----VLVNLNHPPEEE 259
E+ + + +SE VSE D ++ E V+D + Q A G V ++ E++
Sbjct: 657 -EEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVEKQ 715
Query: 260 NVFLAPQLARAVKPHQIGGIRF---LYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVI 316
+ L + +K +Q+ G+ + LY+N + ILA MGLGKT+Q I
Sbjct: 716 SALL---INGTLKHYQLQGLEWMVSLYNNNLNG------------ILADEMGLGKTIQTI 760
Query: 317 SFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLP 352
+ I L H L IVP++TL NW EF+ W P
Sbjct: 761 ALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAP 797
Score = 33.9 bits (76), Expect = 1.2
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 17/154 (11%)
Query: 1 MSDESASGSDPDLDPDVELEDAEEEEEEEEVAVEE------CDRDDEEDLLDDPSLEGMC 54
M D+ +S + LE EE EEE+EV +E R++E DL ++
Sbjct: 1203 MFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMD--- 1259
Query: 55 GTEHAQLGEDGQQPPRCTSTTSSQSEPSEQLRRH-QGKNLASEDPKKKRAQKPSHMRRNI 113
+ ED + P R PS ++ + + L E+ ++K + S RR++
Sbjct: 1260 -----RRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRDV 1314
Query: 114 --RKLLREDQLEPVTKAAQQEELERRKRLEQQRK 145
L E Q + EE+E RL+++++
Sbjct: 1315 DYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKR 1348
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 123 bits (309), Expect = 1e-27
Identities = 109/439 (24%), Positives = 186/439 (42%), Gaps = 91/439 (20%)
Query: 460 VICDEGHRIKNCQASTSQALK-NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
+I DEGHR+KN +Q L + + RR++LTG PLQN L E W +++F+ P +
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 519 EFSNMFERPI-LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
F F P + G+ +D ++ L+ R LH +L F+ R
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPFLLR---------------- 978
Query: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESL 637
++++++ Q ++ + + C + VLY +Q + +
Sbjct: 979 -------RLKKEVEAQLPEKVE---------------YVIKCDMSALQRVLYRHMQAKGV 1016
Query: 638 ANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGN 697
+ ++ G GT T + M + F + +GF +G
Sbjct: 1017 LLTDGSEKDKKGKGGTKTL---MNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 698 NIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFL 757
++ S K LL ++ + K+L+F Q S + ++E++
Sbjct: 1074 DLY-----------------RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYF 1116
Query: 758 GKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTR 817
R Y RLDG+T A +R L+ FN+P + ++FLLSTR
Sbjct: 1117 A------------------YRGFKYLRLDGTTKAEDRGMLLKTFNEPGS-EYFIFLLSTR 1157
Query: 818 AGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKI--- 874
AG LG+NL A+ V++FD+ WNP D QA R +R GQ+ + RL ++E+KI
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 875 ------YDRQISKQGMSDR 887
D+++ + GM D+
Sbjct: 1218 AKYKLNVDQKVIQAGMFDQ 1236
Score = 65.1 bits (157), Expect = 5e-10
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 36/285 (12%)
Query: 82 SEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLE 141
+E +R+H+ +A E KKK+ +K + + + EP+ + +Q +L +
Sbjct: 565 TELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDG--EPLDETSQMSDLPVKVIHV 622
Query: 142 QQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEV 201
+ K + E L + G ++ PR ++E SGSE+E+ +E
Sbjct: 623 ESGKILTGTDAPKAGQL---EAWLEMNPGYEVAPRSDSEE-------SGSEEEEEEEEEE 672
Query: 202 IELSSGEEDTLHIVDS-------SESVSEDDEEE--EKGGTHVNDVLNQRDALGRVLVNL 252
+ + + TL + + S+ VSE D E V+D AL R L +
Sbjct: 673 -QPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
Query: 253 ----NHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 308
+ E + A + +K +QI G+ +L +L ILA MG
Sbjct: 732 YAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNG---------ILADEMG 782
Query: 309 LGKTLQVISFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLP 352
LGKT+Q I+ I L H L IVP++TL NW EF+ W P
Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAP 827
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 123 bits (309), Expect = 1e-27
Identities = 109/439 (24%), Positives = 186/439 (42%), Gaps = 91/439 (20%)
Query: 460 VICDEGHRIKNCQASTSQALK-NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
+I DEGHR+KN +Q L + + RR++LTG PLQN L E W +++F+ P +
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 519 EFSNMFERPI-LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
F F P + G+ +D ++ L+ R LH +L F+ R
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPFLLR---------------- 978
Query: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESL 637
++++++ Q ++ + + C + VLY +Q + +
Sbjct: 979 -------RLKKEVEAQLPEKVE---------------YVIKCDMSALQRVLYRHMQAKGV 1016
Query: 638 ANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGN 697
+ ++ G GT T + M + F + +GF +G
Sbjct: 1017 LLTDGSEKDKKGKGGTKTL---MNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 698 NIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFL 757
++ S K LL ++ + K+L+F Q S + ++E++
Sbjct: 1074 DLY-----------------RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYF 1116
Query: 758 GKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTR 817
R Y RLDG+T A +R L+ FN+P + ++FLLSTR
Sbjct: 1117 A------------------YRGFKYLRLDGTTKAEDRGMLLKTFNEPGS-EYFIFLLSTR 1157
Query: 818 AGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKI--- 874
AG LG+NL A+ V++FD+ WNP D QA R +R GQ+ + RL ++E+KI
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 875 ------YDRQISKQGMSDR 887
D+++ + GM D+
Sbjct: 1218 AKYKLNVDQKVIQAGMFDQ 1236
Score = 65.1 bits (157), Expect = 5e-10
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 36/285 (12%)
Query: 82 SEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLE 141
+E +R+H+ +A E KKK+ +K + + + EP+ + +Q +L +
Sbjct: 565 TELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDG--EPLDETSQMSDLPVKVIHV 622
Query: 142 QQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEV 201
+ K + E L + G ++ PR ++E SGSE+E+ +E
Sbjct: 623 ESGKILTGTDAPKAGQL---EAWLEMNPGYEVAPRSDSEE-------SGSEEEEEEEEEE 672
Query: 202 IELSSGEEDTLHIVDS-------SESVSEDDEEE--EKGGTHVNDVLNQRDALGRVLVNL 252
+ + + TL + + S+ VSE D E V+D AL R L +
Sbjct: 673 -QPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
Query: 253 ----NHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 308
+ E + A + +K +QI G+ +L +L ILA MG
Sbjct: 732 YAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNG---------ILADEMG 782
Query: 309 LGKTLQVISFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLP 352
LGKT+Q I+ I L H L IVP++TL NW EF+ W P
Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAP 827
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 123 bits (309), Expect = 1e-27
Identities = 109/439 (24%), Positives = 186/439 (42%), Gaps = 91/439 (20%)
Query: 460 VICDEGHRIKNCQASTSQALK-NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
+I DEGHR+KN +Q L + + RR++LTG PLQN L E W +++F+ P +
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 519 EFSNMFERPI-LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
F F P + G+ +D ++ L+ R LH +L F+ R
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPFLLR---------------- 978
Query: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESL 637
++++++ Q ++ + + C + VLY +Q + +
Sbjct: 979 -------RLKKEVEAQLPEKVE---------------YVIKCDMSALQRVLYRHMQAKGV 1016
Query: 638 ANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGN 697
+ ++ G GT T + M + F + +GF +G
Sbjct: 1017 LLTDGSEKDKKGKGGTKTL---MNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 698 NIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFL 757
++ S K LL ++ + K+L+F Q S + ++E++
Sbjct: 1074 DLY-----------------RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYF 1116
Query: 758 GKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTR 817
R Y RLDG+T A +R L+ FN+P + ++FLLSTR
Sbjct: 1117 A------------------YRGFKYLRLDGTTKAEDRGMLLKTFNEPGS-EYFIFLLSTR 1157
Query: 818 AGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKI--- 874
AG LG+NL A+ V++FD+ WNP D QA R +R GQ+ + RL ++E+KI
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 875 ------YDRQISKQGMSDR 887
D+++ + GM D+
Sbjct: 1218 AKYKLNVDQKVIQAGMFDQ 1236
Score = 65.1 bits (157), Expect = 5e-10
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 36/285 (12%)
Query: 82 SEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLE 141
+E +R+H+ +A E KKK+ +K + + + EP+ + +Q +L +
Sbjct: 565 TELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDG--EPLDETSQMSDLPVKVIHV 622
Query: 142 QQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEV 201
+ K + E L + G ++ PR ++E SGSE+E+ +E
Sbjct: 623 ESGKILTGTDAPKAGQL---EAWLEMNPGYEVAPRSDSEE-------SGSEEEEEEEEEE 672
Query: 202 IELSSGEEDTLHIVDS-------SESVSEDDEEE--EKGGTHVNDVLNQRDALGRVLVNL 252
+ + + TL + + S+ VSE D E V+D AL R L +
Sbjct: 673 -QPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
Query: 253 ----NHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 308
+ E + A + +K +QI G+ +L +L ILA MG
Sbjct: 732 YAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNG---------ILADEMG 782
Query: 309 LGKTLQVISFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLP 352
LGKT+Q I+ I L H L IVP++TL NW EF+ W P
Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAP 827
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 123 bits (309), Expect = 1e-27
Identities = 109/439 (24%), Positives = 186/439 (42%), Gaps = 91/439 (20%)
Query: 460 VICDEGHRIKNCQASTSQALK-NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
+I DEGHR+KN +Q L + + RR++LTG PLQN L E W +++F+ P +
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 519 EFSNMFERPI-LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
F F P + G+ +D ++ L+ R LH +L F+ R
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPFLLR---------------- 978
Query: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESL 637
++++++ Q ++ + + C + VLY +Q + +
Sbjct: 979 -------RLKKEVEAQLPEKVE---------------YVIKCDMSALQRVLYRHMQAKGV 1016
Query: 638 ANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGN 697
+ ++ G GT T + M + F + +GF +G
Sbjct: 1017 LLTDGSEKDKKGKGGTKTL---MNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 698 NIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFL 757
++ S K LL ++ + K+L+F Q S + ++E++
Sbjct: 1074 DLY-----------------RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYF 1116
Query: 758 GKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTR 817
R Y RLDG+T A +R L+ FN+P + ++FLLSTR
Sbjct: 1117 A------------------YRGFKYLRLDGTTKAEDRGMLLKTFNEPGS-EYFIFLLSTR 1157
Query: 818 AGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKI--- 874
AG LG+NL A+ V++FD+ WNP D QA R +R GQ+ + RL ++E+KI
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 875 ------YDRQISKQGMSDR 887
D+++ + GM D+
Sbjct: 1218 AKYKLNVDQKVIQAGMFDQ 1236
Score = 65.1 bits (157), Expect = 5e-10
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 36/285 (12%)
Query: 82 SEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLE 141
+E +R+H+ +A E KKK+ +K + + + EP+ + +Q +L +
Sbjct: 565 TELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDG--EPLDETSQMSDLPVKVIHV 622
Query: 142 QQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEV 201
+ K + E L + G ++ PR ++E SGSE+E+ +E
Sbjct: 623 ESGKILTGTDAPKAGQL---EAWLEMNPGYEVAPRSDSEE-------SGSEEEEEEEEEE 672
Query: 202 IELSSGEEDTLHIVDS-------SESVSEDDEEE--EKGGTHVNDVLNQRDALGRVLVNL 252
+ + + TL + + S+ VSE D E V+D AL R L +
Sbjct: 673 -QPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
Query: 253 ----NHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 308
+ E + A + +K +QI G+ +L +L ILA MG
Sbjct: 732 YAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNG---------ILADEMG 782
Query: 309 LGKTLQVISFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLP 352
LGKT+Q I+ I L H L IVP++TL NW EF+ W P
Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAP 827
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 123 bits (309), Expect = 1e-27
Identities = 109/439 (24%), Positives = 186/439 (42%), Gaps = 91/439 (20%)
Query: 460 VICDEGHRIKNCQASTSQALK-NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
+I DEGHR+KN +Q L + + RR++LTG PLQN L E W +++F+ P +
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 519 EFSNMFERPI-LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
F F P + G+ +D ++ L+ R LH +L F+ R
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPFLLR---------------- 978
Query: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESL 637
++++++ Q ++ + + C + VLY +Q + +
Sbjct: 979 -------RLKKEVEAQLPEKVE---------------YVIKCDMSALQRVLYRHMQAKGV 1016
Query: 638 ANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGN 697
+ ++ G GT T + M + F + +GF +G
Sbjct: 1017 LLTDGSEKDKKGKGGTKTL---MNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 698 NIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFL 757
++ S K LL ++ + K+L+F Q S + ++E++
Sbjct: 1074 DLY-----------------RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYF 1116
Query: 758 GKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTR 817
R Y RLDG+T A +R L+ FN+P + ++FLLSTR
Sbjct: 1117 A------------------YRGFKYLRLDGTTKAEDRGMLLKTFNEPGS-EYFIFLLSTR 1157
Query: 818 AGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKI--- 874
AG LG+NL A+ V++FD+ WNP D QA R +R GQ+ + RL ++E+KI
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 875 ------YDRQISKQGMSDR 887
D+++ + GM D+
Sbjct: 1218 AKYKLNVDQKVIQAGMFDQ 1236
Score = 65.1 bits (157), Expect = 5e-10
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 36/285 (12%)
Query: 82 SEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLE 141
+E +R+H+ +A E KKK+ +K + + + EP+ + +Q +L +
Sbjct: 565 TELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDG--EPLDETSQMSDLPVKVIHV 622
Query: 142 QQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEV 201
+ K + E L + G ++ PR ++E SGSE+E+ +E
Sbjct: 623 ESGKILTGTDAPKAGQL---EAWLEMNPGYEVAPRSDSEE-------SGSEEEEEEEEEE 672
Query: 202 IELSSGEEDTLHIVDS-------SESVSEDDEEE--EKGGTHVNDVLNQRDALGRVLVNL 252
+ + + TL + + S+ VSE D E V+D AL R L +
Sbjct: 673 -QPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
Query: 253 ----NHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 308
+ E + A + +K +QI G+ +L +L ILA MG
Sbjct: 732 YAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNG---------ILADEMG 782
Query: 309 LGKTLQVISFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLP 352
LGKT+Q I+ I L H L IVP++TL NW EF+ W P
Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAP 827
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 123 bits (309), Expect = 1e-27
Identities = 109/439 (24%), Positives = 186/439 (42%), Gaps = 91/439 (20%)
Query: 460 VICDEGHRIKNCQASTSQALK-NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
+I DEGHR+KN +Q L + + RR++LTG PLQN L E W +++F+ P +
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 519 EFSNMFERPI-LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
F F P + G+ +D ++ L+ R LH +L F+ R
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPFLLR---------------- 978
Query: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESL 637
++++++ Q ++ + + C + VLY +Q + +
Sbjct: 979 -------RLKKEVEAQLPEKVE---------------YVIKCDMSALQRVLYRHMQAKGV 1016
Query: 638 ANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGN 697
+ ++ G GT T + M + F + +GF +G
Sbjct: 1017 LLTDGSEKDKKGKGGTKTL---MNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 698 NIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFL 757
++ S K LL ++ + K+L+F Q S + ++E++
Sbjct: 1074 DLY-----------------RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYF 1116
Query: 758 GKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTR 817
R Y RLDG+T A +R L+ FN+P + ++FLLSTR
Sbjct: 1117 A------------------YRGFKYLRLDGTTKAEDRGMLLKTFNEPGS-EYFIFLLSTR 1157
Query: 818 AGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKI--- 874
AG LG+NL A+ V++FD+ WNP D QA R +R GQ+ + RL ++E+KI
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 875 ------YDRQISKQGMSDR 887
D+++ + GM D+
Sbjct: 1218 AKYKLNVDQKVIQAGMFDQ 1236
Score = 65.1 bits (157), Expect = 5e-10
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 36/285 (12%)
Query: 82 SEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLE 141
+E +R+H+ +A E KKK+ +K + + + EP+ + +Q +L +
Sbjct: 565 TELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDG--EPLDETSQMSDLPVKVIHV 622
Query: 142 QQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEV 201
+ K + E L + G ++ PR ++E SGSE+E+ +E
Sbjct: 623 ESGKILTGTDAPKAGQL---EAWLEMNPGYEVAPRSDSEE-------SGSEEEEEEEEEE 672
Query: 202 IELSSGEEDTLHIVDS-------SESVSEDDEEE--EKGGTHVNDVLNQRDALGRVLVNL 252
+ + + TL + + S+ VSE D E V+D AL R L +
Sbjct: 673 -QPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
Query: 253 ----NHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 308
+ E + A + +K +QI G+ +L +L ILA MG
Sbjct: 732 YAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNG---------ILADEMG 782
Query: 309 LGKTLQVISFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLP 352
LGKT+Q I+ I L H L IVP++TL NW EF+ W P
Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAP 827
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 123 bits (309), Expect = 1e-27
Identities = 109/439 (24%), Positives = 186/439 (42%), Gaps = 91/439 (20%)
Query: 460 VICDEGHRIKNCQASTSQALK-NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQ 518
+I DEGHR+KN +Q L + + RR++LTG PLQN L E W +++F+ P +
Sbjct: 878 MIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCS 937
Query: 519 EFSNMFERPI-LNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEEN 577
F F P + G+ +D ++ L+ R LH +L F+ R
Sbjct: 938 TFEQWFNAPFAMTGEKVDLNEEETILIIRR---LHKVLRPFLLR---------------- 978
Query: 578 VILVRLSKIQRDLYTQFMDRFRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQKESL 637
++++++ Q ++ + + C + VLY +Q + +
Sbjct: 979 -------RLKKEVEAQLPEKVE---------------YVIKCDMSALQRVLYRHMQAKGV 1016
Query: 638 ANEQDLDVEELGSAGTSARCPPQGTKGKGEDSTLASSMGEATNSKFLQGVGFNPFQERGN 697
+ ++ G GT T + M + F + +GF +G
Sbjct: 1017 LLTDGSEKDKKGKGGTKTL---MNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 698 NIVTYEWAKDLLTNYQTGVLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFL 757
++ S K LL ++ + K+L+F Q S + ++E++
Sbjct: 1074 DLY-----------------RASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYF 1116
Query: 758 GKREVPCPPGTEGQGAQKWVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTR 817
R Y RLDG+T A +R L+ FN+P + ++FLLSTR
Sbjct: 1117 A------------------YRGFKYLRLDGTTKAEDRGMLLKTFNEPGS-EYFIFLLSTR 1157
Query: 818 AGCLGVNLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKI--- 874
AG LG+NL A+ V++FD+ WNP D QA R +R GQ+ + RL ++E+KI
Sbjct: 1158 AGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAA 1217
Query: 875 ------YDRQISKQGMSDR 887
D+++ + GM D+
Sbjct: 1218 AKYKLNVDQKVIQAGMFDQ 1236
Score = 65.1 bits (157), Expect = 5e-10
Identities = 74/285 (25%), Positives = 120/285 (42%), Gaps = 36/285 (12%)
Query: 82 SEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLEPVTKAAQQEELERRKRLE 141
+E +R+H+ +A E KKK+ +K + + + EP+ + +Q +L +
Sbjct: 565 TELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDG--EPLDETSQMSDLPVKVIHV 622
Query: 142 QQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGSEDEKSSRDEV 201
+ K + E L + G ++ PR ++E SGSE+E+ +E
Sbjct: 623 ESGKILTGTDAPKAGQL---EAWLEMNPGYEVAPRSDSEE-------SGSEEEEEEEEEE 672
Query: 202 IELSSGEEDTLHIVDS-------SESVSEDDEEE--EKGGTHVNDVLNQRDALGRVLVNL 252
+ + + TL + + S+ VSE D E V+D AL R L +
Sbjct: 673 -QPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSY 731
Query: 253 ----NHPPEEENVFLAPQLARAVKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMG 308
+ E + A + +K +QI G+ +L +L ILA MG
Sbjct: 732 YAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNG---------ILADEMG 782
Query: 309 LGKTLQVISFIDVLFRHTPAK-TVLAIVPVNTLQNWLAEFNMWLP 352
LGKT+Q I+ I L H L IVP++TL NW EF+ W P
Sbjct: 783 LGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAP 827
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 118 bits (296), Expect = 4e-26
Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 19/174 (10%)
Query: 716 VLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQK 775
++ NS KMV+L L+ + + G ++L+FSQ L ++E++
Sbjct: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------------M 523
Query: 776 WVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFD 835
W R Y RLDG TP ERE I FN P N + ++F+LSTRAG LG+NL A+ V+++D
Sbjct: 524 W-RGYEYCRLDGQTPHEEREEAIEAFNAP-NSSKFIFMLSTRAGGLGINLASADVVILYD 581
Query: 836 ASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVV 889
+ WNP D QA+ R +R GQKKP ++RL+ D T+E++I +R K + V+
Sbjct: 582 SDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 635
Score = 108 bits (270), Expect = 4e-23
Identities = 103/364 (28%), Positives = 166/364 (45%), Gaps = 92/364 (25%)
Query: 271 VKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVL--FRHTPA 328
++ +QI G+ +L +L E+ G ILA MGLGKTLQ I+ + L +R+ P
Sbjct: 183 LRDYQIRGLNWLI-SLYEN--------GVNGILADEMGLGKTLQTIALLGYLKHYRNIPG 233
Query: 329 KTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAK 388
++ +VP +TL NW+ EF W+ P + + D+ +RA
Sbjct: 234 PHMV-LVPKSTLHNWMNEFKRWV----------------PSLRVICFVGDKD----ARAA 272
Query: 389 VMADWVSEG--GVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRR 446
+ D + G V + YEM + E+ ++F
Sbjct: 273 FIRDEMMPGEWDVCVTSYEMV---------------------------IKEKSVFKKFHW 305
Query: 447 EFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMV 506
+ ++ DE HRIKN ++ S+ ++ +S R++LTG PLQNNL E W ++
Sbjct: 306 RY-----------LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 354
Query: 507 DFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTV 566
+F+ PD + +F + F+ G D +L+ LH++L+ F+ RR T
Sbjct: 355 NFLLPDVFNSADDFDSWFDTKNCLG--------DQKLVER----LHAVLKPFLLRRIKTD 402
Query: 567 LKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRD-CGSSGWLG----LNPLKAFCVCCKI 621
++ LP K+E I + LSK+QR+ YT+ + + D SSG + LN L CC
Sbjct: 403 VEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCC-- 460
Query: 622 WNHP 625
NHP
Sbjct: 461 -NHP 463
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 114 bits (285), Expect = 7e-25
Identities = 65/174 (37%), Positives = 101/174 (58%), Gaps = 19/174 (10%)
Query: 716 VLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQK 775
++ NS KMV+L L+ + + G ++L+FSQ L ++E++
Sbjct: 478 LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYC-----------------M 520
Query: 776 WVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFD 835
W RN Y RLDG TP ER+ IN +N+P N T ++F+LSTRAG LG+NL A+ V+++D
Sbjct: 521 W-RNYEYCRLDGQTPHDERQDSINAYNEP-NSTKFVFMLSTRAGGLGINLATADVVILYD 578
Query: 836 ASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVV 889
+ WNP D QA+ R +R GQ K ++R + D T+E++I +R K + V+
Sbjct: 579 SDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
Score = 110 bits (275), Expect = 1e-23
Identities = 99/336 (29%), Positives = 153/336 (45%), Gaps = 79/336 (23%)
Query: 297 SGFGCILAHSMGLGKTLQVISFIDVL--FRHTPAKTVLAIVPVNTLQNWLAEFNMWLPPP 354
+G ILA MGLGKTLQ IS + + +R+ P ++ +VP +TL NW++EF W+P
Sbjct: 197 NGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMV-LVPKSTLHNWMSEFKRWVPTL 255
Query: 355 EALPADNKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKK 414
+ V ++ D+ + A V+ E V + YEM L+ K
Sbjct: 256 RS----------------VCLIGDKEQRAAFVRDVLLP--GEWDVCVTSYEM--LIKEKS 295
Query: 415 SFATGRPKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQAS 474
F KK R ++ DE HRIKN ++
Sbjct: 296 VF-----KKFNWR-------------------------------YLVIDEAHRIKNEKSK 319
Query: 475 TSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCI 534
S+ ++ ++ R++LTG PLQNNL E W +++F+ PD + +F + F+ C+
Sbjct: 320 LSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFD----TNNCL 375
Query: 535 DSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQF 594
D +L+ LH +L F+ RR ++ LP K+E I V LSK+QR+ YT+
Sbjct: 376 G----DQKLVER----LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRI 427
Query: 595 MDRFRD-CGSSGWLG----LNPLKAFCVCCKIWNHP 625
+ + D S+G + LN L CC NHP
Sbjct: 428 LMKDIDILNSAGKMDKMRLLNILMQLRKCC---NHP 460
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 109 bits (273), Expect = 2e-23
Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 31/186 (16%)
Query: 716 VLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQK 775
++ NS KMV+L L+ + + G ++L+FSQ L ++E++
Sbjct: 481 IVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYC-----------------M 523
Query: 776 WVRNISYFRLDGSTPAFERE------------RLINQFNDPSNLTTWLFLLSTRAGCLGV 823
W R Y RLDG TP ERE I FN P N + ++F+LSTRAG LG+
Sbjct: 524 W-RGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNAP-NSSKFIFMLSTRAGGLGI 581
Query: 824 NLIGANRVVVFDASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQG 883
NL A+ V+++D+ WNP D QA+ R +R GQKKP ++RL+ D T+E++I +R K
Sbjct: 582 NLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLR 641
Query: 884 MSDRVV 889
+ V+
Sbjct: 642 LDSIVI 647
Score = 108 bits (270), Expect = 4e-23
Identities = 103/364 (28%), Positives = 166/364 (45%), Gaps = 92/364 (25%)
Query: 271 VKPHQIGGIRFLYDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVL--FRHTPA 328
++ +QI G+ +L +L E+ G ILA MGLGKTLQ I+ + L +R+ P
Sbjct: 183 LRDYQIRGLNWLI-SLYEN--------GVNGILADEMGLGKTLQTIALLGYLKHYRNIPG 233
Query: 329 KTVLAIVPVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAK 388
++ +VP +TL NW+ EF W+ P + + D+ +RA
Sbjct: 234 PHMV-LVPKSTLHNWMNEFKRWV----------------PSLRVICFVGDKD----ARAA 272
Query: 389 VMADWVSEG--GVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQQEFRR 446
+ D + G V + YEM + E+ ++F
Sbjct: 273 FIRDEMMPGEWDVCVTSYEMV---------------------------IKEKSVFKKFHW 305
Query: 447 EFEKALCRPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMV 506
+ ++ DE HRIKN ++ S+ ++ +S R++LTG PLQNNL E W ++
Sbjct: 306 RY-----------LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 354
Query: 507 DFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTV 566
+F+ PD + +F + F+ G D +L+ LH++L+ F+ RR T
Sbjct: 355 NFLLPDVFNSADDFDSWFDTKNCLG--------DQKLVER----LHAVLKPFLLRRIKTD 402
Query: 567 LKIHLPAKEENVILVRLSKIQRDLYTQFMDRFRD-CGSSGWLG----LNPLKAFCVCCKI 621
++ LP K+E I + LSK+QR+ YT+ + + D SSG + LN L CC
Sbjct: 403 VEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCC-- 460
Query: 622 WNHP 625
NHP
Sbjct: 461 -NHP 463
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 107 bits (266), Expect = 1e-22
Identities = 176/716 (24%), Positives = 271/716 (37%), Gaps = 164/716 (22%)
Query: 1 MSDESASGSDP-------DLDPDVELEDAEEEEEEEEVAVEECDRDDEED---------- 43
+ SA+ S P D D D + ++ EEE++EE + VEE ++ +
Sbjct: 266 LGSSSAASSPPPPASRLDDEDGDFQPQEDEEEDDEETIEVEEQQEGNDAEAQRREIELLR 325
Query: 44 -----------------LLDDPSLEGMCGTEHAQLGEDG------QQPPRCTSTTSSQSE 80
LL+ PS + H DG ++PP+ +
Sbjct: 326 REGELPLEELLRSLPPQLLEGPSSPSQTPSSHDSDTRDGPEEGAEEEPPQVLEI---KPP 382
Query: 81 PSEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLREDQLE-------PVTKAAQQEE 133
PS +R++ ED ++ A + + E+QLE +++ A++ E
Sbjct: 383 PSAVTQRNKQPWHPDEDDEEFTANE-EEAEDEEDTIAAEEQLEGEVDHAMELSELAREGE 441
Query: 134 LERRKRLEQQRKDYAAPIPTVPLEFLPEEIALRASDGPQLPPRVLAQEVICLDSSSGS-- 191
L + L+Q YA + E E A + P+ P V A+E DSSS S
Sbjct: 442 LSMEELLQQYAGAYAPGSGSSEDEDEDEVDANSSDCEPEGP--VEAEEPPQEDSSSQSDS 499
Query: 192 --------EDEKSSRDEVIELSSGEEDTLHIVDSSESVSEDDEEEEKGGTHVNDVLNQRD 243
EDE S +E S+ EE + ++S S+ DEEEE V +L + +
Sbjct: 500 VEDRSEDEEDEHSEEEETSGSSASEESESEESEDAQSQSQADEEEEDDDFGVEYLLARDE 559
Query: 244 ALGRVLVNLNHPPEEENVFLAPQ-----LARAVKPHQIGGIRFL---------------- 282
+ PP L P+ +A A + Q G
Sbjct: 560 EQSEADAG-SGPPTPGPTTLGPKKEITDIAAAAESLQPKGYTLATTQVKTPIPLLLRGQL 618
Query: 283 -------YDNLVESLERFKTSSGFGCILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIV 335
D LV E K +G ILA MGLGKT+Q IS
Sbjct: 619 REYQHIGLDWLVTMYE--KKLNG---ILADEMGLGKTIQTISL----------------- 656
Query: 336 PVNTLQNWLAEFNMWLPPPEALPADNKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVS 395
L + E W P +P VM +W
Sbjct: 657 ----LAHLACEKGNWGPHLIIVPTS----------------------------VMLNWEM 684
Query: 396 EGGVLLMGYEMYRLLTLKKSFATGRPKKTKKRSHPVIIDLDEEDRQ--QEFRREFEKALC 453
E +++ +K R TK + V I + Q Q FRR+ + L
Sbjct: 685 ELKRWCPSFKILTYYGAQKERKLKRQGWTKPNAFHVCITSYKLVLQDHQAFRRKNWRYL- 743
Query: 454 RPGPDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDF 513
I DE IKN ++ Q+L N S+RR++LTG PLQN+L+E W ++ F+ P
Sbjct: 744 -------ILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHV 796
Query: 514 LGTRQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPA 573
+ +EF F P L G S + L++ LH +L F+ RR ++ +P
Sbjct: 797 FQSHREFKEWFSNP-LTGMIEGSQEYNEGLVKR----LHKVLRPFLLRRVKVDVEKQMPK 851
Query: 574 KEENVILVRLSKIQRDLYTQFMDR--FRDCGSSGWLGLNPLKAFCVCCKIWNHPDV 627
K E+VI RLSK QR LY FM + ++ ++G ++ + K+ NHP++
Sbjct: 852 KYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHF-MSVINILMQLRKVCNHPNL 906
Score = 102 bits (253), Expect = 4e-21
Identities = 73/254 (28%), Positives = 122/254 (48%), Gaps = 31/254 (12%)
Query: 722 KMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNIS 781
K+ L L+ + G ++L+F+Q L ++E+FL
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT------------------YHGHL 2085
Query: 782 YFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPC 841
Y RLDGST +R+ L+ +FN + + F+LSTR+G +GVNL GA+ VV +D+ WNP
Sbjct: 2086 YLRLDGSTRVEQRQALMERFNADKRI--FCFILSTRSGGVGVNLTGADTVVFYDSDWNPT 2143
Query: 842 HDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN-PMLNFTR 900
DAQA R +R GQ + +IYRL+++ T+E+ I + K+ + D ++ N F +
Sbjct: 2144 MDAQAQDRCHRIGQTRDVHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQ 2203
Query: 901 KEVENLLHFVEKEPAPQVSLNVKGIKESVLQLACLKYPHLITKEPFEHESLLLNRKDHKL 960
+ + L +EP+ S +V E + K H++ E L +D +
Sbjct: 2204 QTIRELFDMPLEEPS---SSSVPSAPEEEEETVASKQTHIL-------EQALCRAEDEED 2253
Query: 961 TKAEKKAAKKSYEE 974
+A +A + E
Sbjct: 2254 IRAATQAKAEQVAE 2267
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 105 bits (263), Expect = 2e-22
Identities = 62/199 (31%), Positives = 109/199 (54%), Gaps = 26/199 (13%)
Query: 716 VLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQK 775
+++ + K+VL+ L+ + G ++L+FSQ + L ++E++L +R P
Sbjct: 1285 MIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYP------------ 1332
Query: 776 WVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFD 835
Y R+DG R+ I++F+ P + ++FLL TRAG LG+NL A+ ++FD
Sbjct: 1333 ------YERIDGRVRGNLRQAAIDRFSKPDS-DRFVFLLCTRAGGLGINLTAADTCIIFD 1385
Query: 836 ASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL--- 892
+ WNP +D QA R +R GQ K IYRL+ + E++++D+ K G+ V+ +
Sbjct: 1386 SDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGR 1445
Query: 893 ----NPMLNFTRKEVENLL 907
N + ++KE+E+LL
Sbjct: 1446 ENATNGVQQLSKKEIEDLL 1464
Score = 79.7 bits (195), Expect = 2e-14
Identities = 84/340 (24%), Positives = 134/340 (39%), Gaps = 70/340 (20%)
Query: 301 CILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPAD 360
CILA MGLGKT+Q I+F+ ++ L I P++T+ NW EF W
Sbjct: 989 CILADEMGLGKTIQSITFLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTW---------- 1038
Query: 361 NKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGR 420
+ H +T+ D +G V+ Y+ + ++T + T
Sbjct: 1039 -----TELNVVVYHGSQASRRTIQLYEMYFKD--PQGRVIKGSYKFHAIITTFEMILTDC 1091
Query: 421 PKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALK 480
P E R +R V+ DE HR+KN + LK
Sbjct: 1092 P----------------ELRNIPWR-------------CVVIDEAHRLKNRNCKLLEGLK 1122
Query: 481 NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQD 540
+ +V+LTG PLQN + E + ++ F+ P + F F G T +
Sbjct: 1123 MMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEF------GDL--KTEEQ 1174
Query: 541 VRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDR-FR 599
V+ L ++L+ + RR ++ +L KEE +I V L+ IQ+ Y +++ F
Sbjct: 1175 VQ-------KLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFT 1227
Query: 600 DCGSSGWLG-----LNPLKAFCVCCKIWNHPDVLYEALQK 634
G LN + CC NHP ++ A +K
Sbjct: 1228 FLSKGGGQANVPNLLNTMMELRKCC---NHPYLINGAEEK 1264
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 105 bits (262), Expect = 3e-22
Identities = 62/198 (31%), Positives = 109/198 (55%), Gaps = 25/198 (12%)
Query: 716 VLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQK 775
+++ + K+VL+ L+ + + G K+L+FSQ + L ++E++L +R
Sbjct: 778 MIQAAGKLVLIDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRY------------- 824
Query: 776 WVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFD 835
+Y R+DG R+ I++F P + ++FLL TRAG LG+NL A+ ++FD
Sbjct: 825 -----TYERIDGRVRGNLRQAAIDRFCKPDS-DRFVFLLCTRAGGLGINLTAADTCIIFD 878
Query: 836 ASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDL--- 892
+ WNP +D QA R +R GQ K +YRL+ + E++++D+ K G+ V+ D+
Sbjct: 879 SDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRK 938
Query: 893 ---NPMLNFTRKEVENLL 907
N + ++ EVE+LL
Sbjct: 939 GGTNGVQQLSKMEVEDLL 956
Score = 77.4 bits (189), Expect = 9e-14
Identities = 81/337 (24%), Positives = 134/337 (39%), Gaps = 64/337 (18%)
Query: 301 CILAHSMGLGKTLQVISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMWLPPPEALPAD 360
CILA MGLGKT+Q I+F+ +F L I P++T+ NW EF W
Sbjct: 482 CILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLSTITNWEREFRTW---------- 531
Query: 361 NKPEEVQPRFFKVHILNDEHKTMASRAKVMADWVSEGGVLLMGYEMYRLLTLKKSFATGR 420
+ H + + V D ++G L ++ + ++T +
Sbjct: 532 -----TEMNAIVYHGSQISRQMIQQYEMVYRD--AQGNPLSGVFKFHVVITTFEMILADC 584
Query: 421 PKKTKKRSHPVIIDLDEEDRQQEFRREFEKALCRPGPDVVICDEGHRIKNCQASTSQALK 480
P+ K VII DE HR+KN + LK
Sbjct: 585 PELKKIHWSCVII-----------------------------DEAHRLKNRNCKLLEGLK 615
Query: 481 NIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSNMFERPILNGQCIDSTPQD 540
+ +V+LTG PLQN++ E + +++F+ P + F F G T +
Sbjct: 616 LMALEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETAFLEEF------GDL--KTEEQ 667
Query: 541 VRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVRLSKIQRDLYTQFMDR--- 597
V+ L S+L+ + RR ++ +L K+E +I V L+ IQ+ Y +++
Sbjct: 668 VK-------KLQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFS 720
Query: 598 FRDCGSSGWLGLNPLKAFCVCCKIWNHPDVLYEALQK 634
F G++ N + K NHP ++ A +K
Sbjct: 721 FLTKGANQHNMPNLINTMMELRKCCNHPYLINGAEEK 757
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 104 bits (259), Expect = 7e-22
Identities = 62/178 (34%), Positives = 99/178 (55%), Gaps = 19/178 (10%)
Query: 716 VLENSPKMVLLFHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQK 775
++ +S K++LL L+ + G+++L+FSQ + L ++ E+L + P
Sbjct: 786 LIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYP------------ 833
Query: 776 WVRNISYFRLDGSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFD 835
+ RLDGS R++ ++ FN + + FLLSTRAG LG+NL A+ VV+FD
Sbjct: 834 ------FQRLDGSIKGEIRKQALDHFNADGS-EDFCFLLSTRAGGLGINLASADTVVIFD 886
Query: 836 ASWNPCHDAQAVCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRVVDDLN 893
+ WNP +D QA R +R GQKK IYRLV T+E++I +R K + V+ ++
Sbjct: 887 SDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMD 944
Score = 70.1 bits (170), Expect = 1e-11
Identities = 58/195 (29%), Positives = 93/195 (47%), Gaps = 25/195 (12%)
Query: 463 DEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGTRQEFSN 522
DE HR+KN + + L + +S R+++TG PLQN+L E W ++ F+ P+ + EF
Sbjct: 617 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE----KFEFWE 672
Query: 523 MFERPILNGQCIDSTPQDVRLMRYRSHVLHSLLEGFVQRRGHTVLKIHLPAKEENVILVR 582
FE G R Y+S LH +LE F+ RR ++ LPAK E ++ V
Sbjct: 673 DFEEDHGKG----------RENGYQS--LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVE 720
Query: 583 LSKIQRDLYTQFMDRFRDCGSSGWLG-----LNPLKAFCVCCKIWNHPDVLYEALQKESL 637
+S +Q+ Y + R + G G LN + CC NH L + ++
Sbjct: 721 MSALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCC---NH-CYLIKPPEENER 776
Query: 638 ANEQDLDVEELGSAG 652
N Q++ + + S+G
Sbjct: 777 ENGQEILLSLIRSSG 791
Score = 53.1 bits (126), Expect = 2e-06
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 302 ILAHSMGLGKTLQVISFIDVLF-RHTPAKTVLAIVPVNTLQNWLAEFNMWLP 352
ILA MGLGKT+Q ISF+ LF +H L +VP++TL +W EF +W P
Sbjct: 506 ILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAP 557
Score = 34.7 bits (78), Expect = 0.69
Identities = 48/258 (18%), Positives = 99/258 (38%), Gaps = 20/258 (7%)
Query: 4 ESASGSDPDLDPDVELEDAEEEEEEEEVAVEECDRDDEEDLLDDPSLEGMCGTEHA---- 59
ES GSDP E + E E + + E + +L + + E
Sbjct: 38 ESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAKEKPASKKERIADVK 97
Query: 60 QLGEDGQQPPRCTSTTSSQSEPSEQLRRHQGKNLASEDPKKKRAQKPSHMRRNIRKLLRE 119
++ E+ + S+ EPS + + + + K+R Q+ + ++ E
Sbjct: 98 KMWEEYPDVYGVRRSNRSRQEPSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQEPSE 157
Query: 120 DQLEPVTKAAQQEELERRKRLEQQRKDYAAPIPTVPLEFLP---------EEIALRASDG 170
D+ E T A + E +K+++ +R +P ++ P ++ + D
Sbjct: 158 DEQEQGTSAESEPE---QKKVKARRPVPRRTVPKPRVKKQPKTQRGKRKKQDSSDEDDDD 214
Query: 171 PQLPPRVLAQEVICLDSSSGSEDEKSSRDEVIELSSGEEDTLHIVDSSESVSE--DDEEE 228
+ P R + S +D ++ D++IE++ D D+SE++ + D
Sbjct: 215 DEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGVDEQQ--DNSETIEKVLDSRLG 272
Query: 229 EKGGTHVNDVLNQRDALG 246
+KG T + + +A G
Sbjct: 273 KKGATGASTTVYAIEANG 290
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,571,617
Number of Sequences: 37866
Number of extensions: 3241830
Number of successful extensions: 22537
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 432
Number of HSP's that attempted gapping in prelim test: 16568
Number of HSP's gapped (non-prelim): 4283
length of query: 1467
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1352
effective length of database: 13,892,928
effective search space: 18783238656
effective search space used: 18783238656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.