Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF683 Sequence: fasta or formatted (504aa) NCBI GI: 168693669
Description:

zinc finger protein 683

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [504aa] zinc finger protein 683
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         44           2
 C cysteine            4.2         21           2
 D aspartate           3.6         18           2
 E glutamate           3.0         15           2
 F phenylalanine       3.2         16           1
 G glycine             7.3         37           2
 H histidine           5.2         26           2
 I isoleucine          1.0          5           1
 K lysine              5.2         26           3
 L leucine            13.3         67           3
 M methionine          2.6         13           2
 N asparagine          2.6         13           2
 P proline            10.9         55           3
 Q glutamine           6.2         31           1
 R arginine            4.0         20           1
 S serine              9.9         50           4
 T threonine           3.6         18           1
 V valine              3.4         17           1
 W tryptophan          0.6          3           1
 Y tyrosine            1.8          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 683 
ZNF683                1.000   zinc finger protein 683 
PRDM1                 0.205   PR domain containing 1, with ZNF domain isoform 1 [...
PRDM1                 0.205   PR domain containing 1, with ZNF domain isoform 2 [H...
ZNF235                0.111   zinc finger protein 93 homolog 
ZNF233                0.109   zinc finger protein 233 
ZIK1                  0.104   zinc finger protein interacting with K protein 1 [Ho...
ZNF416                0.103   zinc finger protein 416 
ZNF211                0.102   zinc finger protein 211 isoform 2 
ZNF211                0.102   zinc finger protein 211 isoform 1 
ZNF616                0.102   zinc finger protein 616 
ZNF347                0.101   zinc finger protein 347 
ZNF154                0.101   zinc finger protein 154 
GFI1B                 0.100   growth factor independent 1B transcription represso...
LOC647678             0.100   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC647678             0.100   PREDICTED: similar to zinc finger protein 347 [Homo...
LOC100287477          0.100   PREDICTED: hypothetical protein XP_002343697 
ZSCAN5B               0.099   zinc finger and SCAN domain containing 5B 
ZNF74                 0.099   zinc finger protein 74 
ZNF256                0.099   zinc finger protein 256 
ZNF239                0.099   zinc finger protein 239 
ZNF239                0.099   zinc finger protein 239 
ZNF239                0.099   zinc finger protein 239 
ZNF239                0.099   zinc finger protein 239 
ZNF813                0.099   zinc finger protein 813 
ZNF611                0.099   zinc finger protein 611 isoform b 
ZNF611                0.099   zinc finger protein 611 isoform a 
ZNF611                0.099   zinc finger protein 611 isoform a 
ZNF611                0.099   zinc finger protein 611 isoform a 
ZNF583                0.099   zinc finger protein 583 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press