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Search of human proteins with 16751921
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|16751921 dermcidin preproprotein [Homo sapiens]
(110 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|16751921 dermcidin preproprotein [Homo sapiens] 219 5e-58
gi|15187164 lacritin precursor [Homo sapiens] 36 0.006
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 32 0.11
gi|190886454 tumor specificity and mitosis phase-dependent expre... 30 0.32
gi|154816198 transcription elongation factor B polypeptide 3C-li... 30 0.54
gi|156938279 transcription elongation factor B polypeptide 3C [H... 30 0.54
gi|23308577 phosphoglycerate dehydrogenase [Homo sapiens] 29 0.71
gi|13994287 BTE-binding protein 4 [Homo sapiens] 29 0.93
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|149274646 hypothetical protein LOC57710 [Homo sapiens] 29 0.93
gi|40254823 SH2 containing inositol phosphatase isoform b [Homo ... 29 0.93
gi|64085167 SH2 containing inositol phosphatase isoform a [Homo ... 29 0.93
gi|223941923 OTU domain containing 1 [Homo sapiens] 28 1.2
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 28 1.2
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 28 1.2
gi|153070260 myristoylated alanine-rich protein kinase C substra... 28 1.6
gi|21703346 spartin [Homo sapiens] 28 1.6
gi|214830187 spartin [Homo sapiens] 28 1.6
gi|214830109 spartin [Homo sapiens] 28 1.6
gi|214830079 spartin [Homo sapiens] 28 1.6
gi|24307971 serine/threonine kinase 38 like [Homo sapiens] 28 1.6
gi|146219841 PNMA-like 2 [Homo sapiens] 28 1.6
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H... 28 2.1
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig... 28 2.1
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 28 2.1
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 28 2.1
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 28 2.1
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 28 2.1
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 28 2.1
>gi|16751921 dermcidin preproprotein [Homo sapiens]
Length = 110
Score = 219 bits (557), Expect = 5e-58
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK 60
MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK
Sbjct: 1 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK 60
Query: 61 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL 110
QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL
Sbjct: 61 QRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVGKGAVHDVKDVLDSVL 110
>gi|15187164 lacritin precursor [Homo sapiens]
Length = 138
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 1 MRFMTLLFLTALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK 60
M+F TLLFL A+AGALV Y +A+S +P EA ++ P P+
Sbjct: 1 MKFTTLLFLAAVAGALV--YAEDASSDSTGADPAQEAGTSKPNEEISGPAEPASPPETTT 58
Query: 61 QRSSLLEKGLDGAKKAVGGLGKL 83
+ G K +L
Sbjct: 59 TAQETSAAAVQGTAKVTSSRQEL 81
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 32.0 bits (71), Expect = 0.11
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
Query: 23 EAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRS-SLLEKGLDGAKKAVGGL 80
EAA+APG+ PC AAQ+ ED + P P K RS SL K DGA + V G+
Sbjct: 656 EAAAAPGTREPC---PAAQEPAPSED-----RNPFPVKLRSTSLSLKYRDGASQEVKGV 706
>gi|190886454 tumor specificity and mitosis phase-dependent
expression protein [Homo sapiens]
Length = 394
Score = 30.4 bits (67), Expect = 0.32
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 19/105 (18%)
Query: 12 LAGALVCAYDPEAASAPGSGNPC-----HEASAAQKENAGEDPGL------------ARQ 54
LAG A PE AP PC SAA + ++ D G AR+
Sbjct: 148 LAGPSAAARSPEQLCAPAEAAPCPAEPERSQSAALEPSSSADAGAVACRALEADSGDARR 207
Query: 55 APKPR-KQRSSLLEKGLD-GAKKAVGGLGKLGKDAVEDLESVGKG 97
AP+ R ++R + G+D G K + L + + ++ LE + +G
Sbjct: 208 APRARGERRRHTIASGVDCGLLKQMKELEQEKEVLLQGLEMMARG 252
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 35 HEASAAQKENAGE-DPGLARQAPKPRKQRSSLLEKGL-DGAKKAVGGLGKLGKDA 87
++AS Q+++AG DPG P P+ SS GL DG +V G G + A
Sbjct: 460 YDASRRQEKSAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHA 514
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 29.6 bits (65), Expect = 0.54
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 35 HEASAAQKENAGE-DPGLARQAPKPRKQRSSLLEKGL-DGAKKAVGGLGKLGKDA 87
++AS Q+++AG DPG P P+ SS GL DG +V G G + A
Sbjct: 460 YDASRRQEKSAGAADPGNGEMEPAPKPAGSSQAPSGLGDGDGGSVSGGGSSNRHA 514
>gi|23308577 phosphoglycerate dehydrogenase [Homo sapiens]
Length = 533
Score = 29.3 bits (64), Expect = 0.71
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 10/93 (10%)
Query: 13 AGALVCAYDPEAASAPG---SGNPCHEASAAQKENAGEDPGLARQAPKP-------RKQR 62
AG V D EAA+ G P + +A + G LARQ P+ + +R
Sbjct: 76 AGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER 135
Query: 63 SSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVG 95
+ L+G + GLG++G++ ++S G
Sbjct: 136 KKFMGTELNGKTLGILGLGRIGREVATRMQSFG 168
>gi|13994287 BTE-binding protein 4 [Homo sapiens]
Length = 252
Score = 28.9 bits (63), Expect = 0.93
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 12 LAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQA 55
LA +++ +APG +P +SAA ++G PG A A
Sbjct: 79 LAASILADLRGGPGAAPGGASPASSSSAASSPSSGRAPGAAPSA 122
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 28.9 bits (63), Expect = 0.93
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 10 TALAGALVCAYDPEAASAP--GSGNPCHEAS--------AAQKENAGEDPGLARQAPKPR 59
T L+ A A AASAP GS + C AS AA+K A P AR P P
Sbjct: 182 TPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARK--ASPSPSSARTQPPPA 239
Query: 60 KQRSSLLEKGLDGAKK 75
R+ LD +
Sbjct: 240 GSRTGRKSHSLDSLSR 255
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 28.9 bits (63), Expect = 0.93
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 10 TALAGALVCAYDPEAASAP--GSGNPCHEAS--------AAQKENAGEDPGLARQAPKPR 59
T L+ A A AASAP GS + C AS AA+K A P AR P P
Sbjct: 182 TPLSPAAAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARK--ASPSPSSARTQPPPA 239
Query: 60 KQRSSLLEKGLDGAKK 75
R+ LD +
Sbjct: 240 GSRTGRKSHSLDSLSR 255
>gi|149274646 hypothetical protein LOC57710 [Homo sapiens]
Length = 1190
Score = 28.9 bits (63), Expect = 0.93
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 29 GSGNPCHEASAAQKENAGEDPGLARQAPKPR-KQRSSLLEKGLDGAKKAVGGLG-----K 82
GSG+ H S A AG PG AP + K+RSS + L G KK LG K
Sbjct: 963 GSGSGGHVLSRASA-GAGTGPGSPSAAPLDQNKKRSSSIASTL-GLKKLFSALGQSSRPK 1020
Query: 83 LGKD---AVEDLESVGKG 97
LGK +VE L+ G
Sbjct: 1021 LGKSRSYSVEQLQPAPPG 1038
>gi|40254823 SH2 containing inositol phosphatase isoform b [Homo
sapiens]
Length = 1188
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 21 DPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGL 80
+P PG +P + AQ+ + GE PG +Q P PR RS +G +A GG
Sbjct: 1045 EPPPCPEPGILSPSIVLTKAQEADRGEGPG--KQVPAPR-LRSFTCSSSAEG--RAAGGD 1099
Query: 81 GKLGK 85
GK
Sbjct: 1100 KSQGK 1104
>gi|64085167 SH2 containing inositol phosphatase isoform a [Homo
sapiens]
Length = 1189
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 21 DPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGL 80
+P PG +P + AQ+ + GE PG +Q P PR RS +G +A GG
Sbjct: 1046 EPPPCPEPGILSPSIVLTKAQEADRGEGPG--KQVPAPR-LRSFTCSSSAEG--RAAGGD 1100
Query: 81 GKLGK 85
GK
Sbjct: 1101 KSQGK 1105
>gi|223941923 OTU domain containing 1 [Homo sapiens]
Length = 481
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 17 VCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKP 58
VC + P A P + P A+A + + + PG A AP+P
Sbjct: 7 VCTHYPAGAPGPTAAAPAPPAAATPFKVSLQPPGAAGAAPEP 48
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 35 HEASAAQKENAGEDPGLARQ--APKPRKQRSSLLEKGLDGAKKA 76
H S + ++ E PG +++ A KP+ RS +EK KKA
Sbjct: 751 HSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRSGKKA 794
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 35 HEASAAQKENAGEDPGLARQ--APKPRKQRSSLLEKGLDGAKKA 76
H S + ++ E PG +++ A KP+ RS +EK KKA
Sbjct: 751 HSGSDSSGRSSSESPGSSKEKKAKKPKHSRSRSVEKSQRSGKKA 794
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 11 ALAGALVCAYDPEAASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRK 60
A GA A + AAS + P EA+A ++ AG DP Q KP++
Sbjct: 196 AAGGAAAAAAEAGAASGEQAAAPGEEAAAGEEGAAGGDP----QEAKPQE 241
>gi|21703346 spartin [Homo sapiens]
Length = 666
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 40 AQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGLGKLGKDA 87
A++EN + PG R + K+ S K LD K V GK GK A
Sbjct: 342 AEEENEFQIPGRTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRA 389
>gi|214830187 spartin [Homo sapiens]
Length = 666
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 40 AQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGLGKLGKDA 87
A++EN + PG R + K+ S K LD K V GK GK A
Sbjct: 342 AEEENEFQIPGRTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRA 389
>gi|214830109 spartin [Homo sapiens]
Length = 666
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 40 AQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGLGKLGKDA 87
A++EN + PG R + K+ S K LD K V GK GK A
Sbjct: 342 AEEENEFQIPGRTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRA 389
>gi|214830079 spartin [Homo sapiens]
Length = 666
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 40 AQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGLGKLGKDA 87
A++EN + PG R + K+ S K LD K V GK GK A
Sbjct: 342 AEEENEFQIPGRTRPSSDQLKEASGTDVKQLDQGNKDVRHKGKRGKRA 389
>gi|24307971 serine/threonine kinase 38 like [Homo sapiens]
Length = 464
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 36 EASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGLGKLGKDAVEDLESVG 95
E + E A E+ GLA + K R+ + + E K+ +LG D E L+ +G
Sbjct: 43 ETRQKKLEVAMEEEGLADEEKKLRRSQHARKETEFLRLKRT-----RLGLDDFESLKVIG 97
Query: 96 KGAVHDVK 103
+GA +V+
Sbjct: 98 RGAFGEVR 105
>gi|146219841 PNMA-like 2 [Homo sapiens]
Length = 635
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 17/89 (19%)
Query: 29 GSGNPCHEASAAQKENAGEDPGLARQAP------KPRKQRSSLLEKGL---------DGA 73
GS EAS Q E ED P KPR +R+ +GL GA
Sbjct: 498 GSNEGSEEASDEQSEEESEDTESEASEPEDRASRKPRAKRARTAPRGLTPAGAPPTASGA 557
Query: 74 KKA-VGGLGKLGKDAVEDLESVGKGAVHD 101
+K GG G+ G+ + ++ +G+ D
Sbjct: 558 RKTRAGGRGR-GRGVTPEKKAGSRGSAQD 585
>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
sapiens]
Length = 340
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 25 ASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGLGKLG 84
A A G G EA A + AG++ +A +A + + + G G +AVG G +G
Sbjct: 141 AEATGEGGSASEAEGAGEGGAGDELRVAEEARE--SDEGAAGDTGPAGEAEAVGEAGAVG 198
Query: 85 K 85
+
Sbjct: 199 E 199
>gi|169216749 PREDICTED: similar to Putative paraneoplastic
antigen-like protein 6B-like protein [Homo sapiens]
Length = 340
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 25 ASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAKKAVGGLGKLG 84
A A G G EA A + AG++ +A +A + + + G G +AVG G +G
Sbjct: 141 AEATGEGGSASEAEGAGEGGAGDELRVAEEARE--SDEGAAGDTGPAGEAEAVGEAGAVG 198
Query: 85 K 85
+
Sbjct: 199 E 199
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 24 AASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAK--------- 74
AASAP G P A+ A AG + A KP + S E+ D +
Sbjct: 225 AASAPAKGTPGKGATPAPPGKAGAVASQTK-AGKPEEDSESSSEESSDSEEETPAAKALL 283
Query: 75 --KAVGGLGKLGKDAVEDLESVGKGA 98
KA G ++G + ES KGA
Sbjct: 284 QAKASGKTSQVGAASAPAKESPRKGA 309
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 24 AASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAK--------- 74
AASAP G P A+ A AG + A KP + S E+ D +
Sbjct: 302 AASAPAKGTPGKGATPAPPGKAGAVASQTK-AGKPEEDSESSSEESSDSEEETPAAKALL 360
Query: 75 --KAVGGLGKLGKDAVEDLESVGKGA 98
KA G ++G + ES KGA
Sbjct: 361 QAKASGKTSQVGAASAPAKESPRKGA 386
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 24 AASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAK--------- 74
AASAP G P A+ A AG + A KP + S E+ D +
Sbjct: 302 AASAPAKGTPGKGATPAPPGKAGAVASQTK-AGKPEEDSESSSEESSDSEEETPAAKALL 360
Query: 75 --KAVGGLGKLGKDAVEDLESVGKGA 98
KA G ++G + ES KGA
Sbjct: 361 QAKASGKTSQVGAASAPAKESPRKGA 386
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 24 AASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAK--------- 74
AASAP G P A+ A AG + A KP + S E+ D +
Sbjct: 225 AASAPAKGTPGKGATPAPPGKAGAVASQTK-AGKPEEDSESSSEESSDSEEETPAAKALL 283
Query: 75 --KAVGGLGKLGKDAVEDLESVGKGA 98
KA G ++G + ES KGA
Sbjct: 284 QAKASGKTSQVGAASAPAKESPRKGA 309
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 27.7 bits (60), Expect = 2.1
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 24 AASAPGSGNPCHEASAAQKENAGEDPGLARQAPKPRKQRSSLLEKGLDGAK--------- 74
AASAP G P A+ A AG + A KP + S E+ D +
Sbjct: 302 AASAPAKGTPGKGATPAPPGKAGAVASQTK-AGKPEEDSESSSEESSDSEEETPAAKALL 360
Query: 75 --KAVGGLGKLGKDAVEDLESVGKGA 98
KA G ++G + ES KGA
Sbjct: 361 QAKASGKTSQVGAASAPAKESPRKGA 386
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,413,127
Number of Sequences: 37866
Number of extensions: 197200
Number of successful extensions: 950
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 98
length of query: 110
length of database: 18,247,518
effective HSP length: 80
effective length of query: 30
effective length of database: 15,218,238
effective search space: 456547140
effective search space used: 456547140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.