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Search of human proteins with 110611151
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110611151 snurportin 1 [Homo sapiens]
(360 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110611151 snurportin 1 [Homo sapiens] 750 0.0
gi|110611149 snurportin 1 [Homo sapiens] 750 0.0
gi|5031833 snurportin 1 [Homo sapiens] 750 0.0
gi|9910266 kinesin family member 15 [Homo sapiens] 40 0.003
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 33 0.52
gi|169213020 PREDICTED: similar to ribosomal protein L24-like [H... 32 0.68
gi|89047474 PREDICTED: similar to ribosomal protein L24-like [Ho... 32 0.68
gi|27485363 PREDICTED: similar to ribosomal protein L24-like [Ho... 32 0.68
gi|34304336 ring finger protein 8 isoform 2 [Homo sapiens] 32 0.88
gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens] 32 0.88
gi|63054848 coiled-coil domain containing 34 isoform 1 [Homo sap... 32 1.2
gi|37594457 nudix-type motif 9 isoform b [Homo sapiens] 31 2.0
gi|13129010 nudix-type motif 9 isoform a [Homo sapiens] 31 2.0
gi|134142828 RNA guanylyltransferase and 5'-phosphatase [Homo sa... 31 2.0
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 30 2.6
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 30 2.6
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 30 2.6
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 30 2.6
gi|169174355 PREDICTED: similar to sphingomyelin phosphodiestera... 30 3.4
gi|169172738 PREDICTED: similar to sphingomyelin phosphodiestera... 30 3.4
gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens] 30 3.4
gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens] 30 3.4
gi|23397670 zinc finger protein 280B [Homo sapiens] 30 3.4
gi|18158228 zinc finger protein 280A [Homo sapiens] 30 3.4
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 30 3.4
gi|119395750 keratin 1 [Homo sapiens] 30 4.4
gi|24432067 FRA10AC1 protein [Homo sapiens] 30 4.4
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso... 30 4.4
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso... 30 4.4
gi|31377846 WD repeat domain 52 [Homo sapiens] 30 4.4
>gi|110611151 snurportin 1 [Homo sapiens]
Length = 360
Score = 750 bits (1937), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 60
MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
Sbjct: 1 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 60
Query: 61 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI 120
HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
Sbjct: 61 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI 120
Query: 121 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN 180
VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
Sbjct: 121 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN 180
Query: 181 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE 240
QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
Sbjct: 181 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE 240
Query: 241 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD 300
SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
Sbjct: 241 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD 300
Query: 301 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN 360
YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
Sbjct: 301 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN 360
>gi|110611149 snurportin 1 [Homo sapiens]
Length = 360
Score = 750 bits (1937), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 60
MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
Sbjct: 1 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 60
Query: 61 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI 120
HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
Sbjct: 61 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI 120
Query: 121 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN 180
VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
Sbjct: 121 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN 180
Query: 181 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE 240
QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
Sbjct: 181 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE 240
Query: 241 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD 300
SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
Sbjct: 241 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD 300
Query: 301 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN 360
YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
Sbjct: 301 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN 360
>gi|5031833 snurportin 1 [Homo sapiens]
Length = 360
Score = 750 bits (1937), Expect = 0.0
Identities = 360/360 (100%), Positives = 360/360 (100%)
Query: 1 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 60
MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN
Sbjct: 1 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 60
Query: 61 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI 120
HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI
Sbjct: 61 HARRLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDLGQEWI 120
Query: 121 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN 180
VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN
Sbjct: 121 VVVCPVGKRALIVASRGSTSAYTKSGYCVNRFSSLLPGGNRRNSTAKDYTILDCIYNEVN 180
Query: 181 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE 240
QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE
Sbjct: 181 QTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPE 240
Query: 241 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD 300
SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD
Sbjct: 241 SLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPD 300
Query: 301 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN 360
YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN
Sbjct: 301 YAGHQLQQIMEHKKSQKEGMKEKLTHKASENGHYELEHLSTPKLKGSSHSPDHPGCLMEN 360
>gi|9910266 kinesin family member 15 [Homo sapiens]
Length = 1388
Score = 40.0 bits (92), Expect = 0.003
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 2 EELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLE-LQKSKRLDYVN 60
EE + L+ + Q L HPR+++Y + SL + RR RLLE +++++ +D
Sbjct: 484 EEQDRLLSELRNEIQTLREQIEHHPRVAKYAMENHSLREENRRLRLLEPVKRAQEMDAQT 543
Query: 61 HAR-RLAEDDWTGMESEEENKKDDEEMDIDTVKKLPKHYANQLMLSEWLIDVPSDL 115
A+ A + +GME ++N++ +K P +AN L L+ + ++L
Sbjct: 544 IAKLEKAFSEISGMEKSDKNQQGFS----PKAQKEPCLFANTEKLKAQLLQIQTEL 595
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 32.7 bits (73), Expect = 0.52
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 267 SPGSTPLVGWLRPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKL 324
SP +P+V W P D G A +T +LQ++++ K + E +KEKL
Sbjct: 529 SPAESPVVAWSDPTTPKDTDGQDRAASTASTNSAIINDRLQELVKLFKERTEKVKEKL 586
>gi|169213020 PREDICTED: similar to ribosomal protein L24-like [Homo
sapiens]
Length = 187
Score = 32.3 bits (72), Expect = 0.68
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 19 NSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEE 78
N T R+ + K K+ + R ++ ELQK + + V + L + G E E
Sbjct: 87 NKTIDAMKRVEEIKQKHQAKFIMNRLKKNKELQKVQDIKEVKQSIHLTQARLAGKGKELE 146
Query: 79 NKKDDE-EMDIDTVKKLPKHYANQL 102
K + + D+D +K L KH+ N L
Sbjct: 147 EKMVQQLQQDVD-MKMLLKHFCNHL 170
>gi|89047474 PREDICTED: similar to ribosomal protein L24-like [Homo
sapiens]
Length = 187
Score = 32.3 bits (72), Expect = 0.68
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 19 NSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEE 78
N T R+ + K K+ + R ++ ELQK + + V + L + G E E
Sbjct: 87 NKTIDAMKRVEEIKQKHQAKFIMNRLKKNKELQKVQDIKEVKQSIHLTQARLAGKGKELE 146
Query: 79 NKKDDE-EMDIDTVKKLPKHYANQL 102
K + + D+D +K L KH+ N L
Sbjct: 147 EKMVQQLQQDVD-MKMLLKHFCNHL 170
>gi|27485363 PREDICTED: similar to ribosomal protein L24-like [Homo
sapiens]
Length = 187
Score = 32.3 bits (72), Expect = 0.68
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 19 NSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEE 78
N T R+ + K K+ + R ++ ELQK + + V + L + G E E
Sbjct: 87 NKTIDAMKRVEEIKQKHQAKFIMNRLKKNKELQKVQDIKEVKQSIHLTQARLAGKGKELE 146
Query: 79 NKKDDE-EMDIDTVKKLPKHYANQL 102
K + + D+D +K L KH+ N L
Sbjct: 147 EKMVQQLQQDVD-MKMLLKHFCNHL 170
>gi|34304336 ring finger protein 8 isoform 2 [Homo sapiens]
Length = 448
Score = 32.0 bits (71), Expect = 0.88
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 2 EELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 60
++L+QAL +++ ++LN + + Q K+K LEQ++ + ++ QK + L ++N
Sbjct: 338 QQLAQALQEHWALMEELNRSKKDFEAIIQAKNK--ELEQTKEEKEKMQAQKEEVLSHMN 394
>gi|4504867 ring finger protein 8 isoform 1 [Homo sapiens]
Length = 485
Score = 32.0 bits (71), Expect = 0.88
Identities = 16/59 (27%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 2 EELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVN 60
++L+QAL +++ ++LN + + Q K+K LEQ++ + ++ QK + L ++N
Sbjct: 338 QQLAQALQEHWALMEELNRSKKDFEAIIQAKNK--ELEQTKEEKEKMQAQKEEVLSHMN 394
>gi|63054848 coiled-coil domain containing 34 isoform 1 [Homo
sapiens]
Length = 373
Score = 31.6 bits (70), Expect = 1.2
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 18/103 (17%)
Query: 24 PHPRLSQYKSKYSSLEQSERRRRLL--------ELQKSKRLDYVNHARRLAED---DWTG 72
P RL+ ++ + E+ ER R L +L+K K ++ + +AE+ +W
Sbjct: 138 PESRLTPWEVWFIGKEKEERDRLQLKALEELNQQLEKRKEMEEREKRKIIAEEKHKEWVQ 197
Query: 73 MESEEENK----KDDEEMDIDTVKKLPKHYANQL---MLSEWL 108
++E++ K K ++EM+ K+L K Y + EWL
Sbjct: 198 KKNEQKRKEREQKINKEMEEKAAKELEKEYLQEKAKEKYQEWL 240
>gi|37594457 nudix-type motif 9 isoform b [Homo sapiens]
Length = 300
Score = 30.8 bits (68), Expect = 2.0
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 274 VGWL---RPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASE 330
VGWL + Y + V+V AGP P QI E S K K+ + S+
Sbjct: 35 VGWLVEWQDYKPVEYTAVSVLAGPRWADP--------QISESNFSPKFNEKDGHVERKSK 86
Query: 331 NGHYELEH 338
NG YE+E+
Sbjct: 87 NGLYEIEN 94
>gi|13129010 nudix-type motif 9 isoform a [Homo sapiens]
Length = 350
Score = 30.8 bits (68), Expect = 2.0
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 274 VGWL---RPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASE 330
VGWL + Y + V+V AGP P QI E S K K+ + S+
Sbjct: 85 VGWLVEWQDYKPVEYTAVSVLAGPRWADP--------QISESNFSPKFNEKDGHVERKSK 136
Query: 331 NGHYELEH 338
NG YE+E+
Sbjct: 137 NGLYEIEN 144
>gi|134142828 RNA guanylyltransferase and 5'-phosphatase [Homo
sapiens]
Length = 597
Score = 30.8 bits (68), Expect = 2.0
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 171 ILDCIYNEVNQTYYVLDVMCWRGHPFYDCQTDFRFYWMHSKL--PEEE----GLGEKTKL 224
I+D + + Y + D++ + P DC + R + ++ P E GL +KT+
Sbjct: 347 IIDRVNGQAVPRYLIYDIIKFNSQPVGDCDFNVRLQCIEREIISPRHEKMKTGLIDKTQ- 405
Query: 225 NPFKFVGLKNFP----CTPESLCD-VLSMDFPFEVDGLLFYHKQTHYSPG-STPLVGWLR 278
PF ++N P CT L + + + E+DGL+F Y PG ++ W
Sbjct: 406 EPF---SVRNKPFFDICTSRKLLEGNFAKEVSHEMDGLIF-QPTGKYKPGRCDDILKWKP 461
Query: 279 PYMVS 283
P + S
Sbjct: 462 PSLNS 466
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 21 TAAPHPRLSQY----KSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESE 76
T P P L Q K+K + LEQ R + ++ + RR E+ + E
Sbjct: 710 TTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERKRQEELRRQQEEILRRQQEE 769
Query: 77 EENKKDDEEM 86
E ++++EE+
Sbjct: 770 ERKRREEEEL 779
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo
sapiens]
Length = 1320
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 21 TAAPHPRLSQY----KSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESE 76
T P P L Q K+K + LEQ R + ++ + RR E+ + E
Sbjct: 737 TTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERKRQEELRRQQEEILRRQQEE 796
Query: 77 EENKKDDEEM 86
E ++++EE+
Sbjct: 797 ERKRREEEEL 806
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 21 TAAPHPRLSQY----KSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESE 76
T P P L Q K+K + LEQ R + ++ + RR E+ + E
Sbjct: 716 TTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERKRQEELRRQQEEILRRQQEE 775
Query: 77 EENKKDDEEM 86
E ++++EE+
Sbjct: 776 ERKRREEEEL 785
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo
sapiens]
Length = 1299
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 21 TAAPHPRLSQY----KSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESE 76
T P P L Q K+K + LEQ R + ++ + RR E+ + E
Sbjct: 716 TTTPGPALEQLQQLEKAKAAKLEQERREAEMRAKREEEERKRQEELRRQQEEILRRQQEE 775
Query: 77 EENKKDDEEM 86
E ++++EE+
Sbjct: 776 ERKRREEEEL 785
>gi|169174355 PREDICTED: similar to sphingomyelin phosphodiesterase
3, neutral membrane [Homo sapiens]
Length = 464
Score = 30.0 bits (66), Expect = 3.4
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 4 LSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHAR 63
L AL++S +S P L Q K ++ L R R + + +RLDY+ +
Sbjct: 355 LGTALSTSVLHQSMASSPKMPRRALEQEKGRHLYLAGLPGRSRRAKPWRGRRLDYITYR- 413
Query: 64 RLAEDDWTGMESEEENKKDDEEMDIDTV 91
W G+ ++ + D +++ V
Sbjct: 414 --GVPGWLGLRHWDDPQPDSRPQEVEQV 439
>gi|169172738 PREDICTED: similar to sphingomyelin phosphodiesterase
3, neutral membrane [Homo sapiens]
Length = 464
Score = 30.0 bits (66), Expect = 3.4
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 4 LSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHAR 63
L AL++S +S P L Q K ++ L R R + + +RLDY+ +
Sbjct: 355 LGTALSTSVLHQSMASSPKMPRRALEQEKGRHLYLAGLPGRSRRAKPWRGRRLDYITYR- 413
Query: 64 RLAEDDWTGMESEEENKKDDEEMDIDTV 91
W G+ ++ + D +++ V
Sbjct: 414 --GVPGWLGLRHWDDPQPDSRPQEVEQV 439
>gi|126723149 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 30.0 bits (66), Expect = 3.4
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 9 ASSFSVSQDLNSTAAP----HPR-----LSQYKSKYSSLEQSERRRRLLELQKSKRLDYV 59
A S+S S +S+A+P PR LSQ +S L E R++ EL K+
Sbjct: 106 ARSWSPSSSASSSASPGRSQSPRAAAAALSQQQSLQERLRLREERKQQEELMKAFETPEE 165
Query: 60 NHARRLAEDDWTGMESEEENKKD 82
ARRLA+ E++E K++
Sbjct: 166 KRARRLAK-----KEAKERKKRE 183
>gi|122937392 chromosome 19 open reading frame 29 [Homo sapiens]
Length = 758
Score = 30.0 bits (66), Expect = 3.4
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 9 ASSFSVSQDLNSTAAP----HPR-----LSQYKSKYSSLEQSERRRRLLELQKSKRLDYV 59
A S+S S +S+A+P PR LSQ +S L E R++ EL K+
Sbjct: 106 ARSWSPSSSASSSASPGRSQSPRAAAAALSQQQSLQERLRLREERKQQEELMKAFETPEE 165
Query: 60 NHARRLAEDDWTGMESEEENKKD 82
ARRLA+ E++E K++
Sbjct: 166 KRARRLAK-----KEAKERKKRE 183
>gi|23397670 zinc finger protein 280B [Homo sapiens]
Length = 543
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 239 PESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLV 274
P ++C + + F E D +L H + H+ PG P V
Sbjct: 371 PSTVCKICELSF--ETDQVLLQHMKDHHKPGEMPYV 404
>gi|18158228 zinc finger protein 280A [Homo sapiens]
Length = 542
Score = 30.0 bits (66), Expect = 3.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 239 PESLCDVLSMDFPFEVDGLLFYHKQTHYSPGSTPLV 274
P ++C + + F E D +L H + H+ PG P V
Sbjct: 362 PSAVCKICELSF--ETDQVLLQHMKDHHKPGEMPYV 395
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 30.0 bits (66), Expect = 3.4
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 30 QYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKK 81
+ K K SS+++ + +LE + + D + H + +ED T + +ENKK
Sbjct: 909 ELKEKVSSVDKQREQTEILESSRMRAQDIIGHHQ--SEDRETSDRAHDENKK 958
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 29.6 bits (65), Expect = 4.4
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 1 MEELSQALASSFSVSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSK-RLDYV 59
+E+ +Q L + + + Q ++++ H ++S ++L RRR+ +L+ + RLD
Sbjct: 201 LEQQNQVLQTKWELLQQVDTSTRTHNLEPYFESFINNL-----RRRVDQLKSDQSRLDSE 255
Query: 60 NHARRLAEDDWTGMESEEENKKDDEEMDIDTVKK 93
+ +D+ +E NK+ + E + T+KK
Sbjct: 256 LKNMQDMVEDYRNKYEDEINKRTNAENEFVTIKK 289
>gi|24432067 FRA10AC1 protein [Homo sapiens]
Length = 315
Score = 29.6 bits (65), Expect = 4.4
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 63 RRLAEDDWTGMESEEENKK----DDEEMDIDTVKKLPKHYANQLMLSEWLIDV 111
+RL E+D T ++ EN + +++EMD+ K+L K Y ++L + D+
Sbjct: 96 KRLGENDKTDLDVIRENHRFLWNEEDEMDMTWEKRLAKKYYDKLFKEYCIADL 148
>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3p [Homo sapiens]
Length = 476
Score = 29.6 bits (65), Expect = 4.4
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 32 KSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKKDDEEMDIDTV 91
K + ++ ERRRR LE KRL RR E+ E++++ K ++E+ I +
Sbjct: 228 KQRIREEKREERRRRELE---KKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLL 284
Query: 92 KKLPK 96
KK K
Sbjct: 285 KKPEK 289
>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3pdelta [Homo sapiens]
Length = 443
Score = 29.6 bits (65), Expect = 4.4
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 32 KSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKKDDEEMDIDTV 91
K + ++ ERRRR LE KRL RR E+ E++++ K ++E+ I +
Sbjct: 195 KQRIREEKREERRRRELE---KKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLL 251
Query: 92 KKLPK 96
KK K
Sbjct: 252 KKPEK 256
>gi|31377846 WD repeat domain 52 [Homo sapiens]
Length = 982
Score = 29.6 bits (65), Expect = 4.4
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 14 VSQDLNSTAAPHPRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGM 73
VS ++ S KSK L + E+R R EL++ R + N +D
Sbjct: 662 VSYEIKDMCIKCFHFSSVKSKILRLIEIEKRERQRELKEKIREERRNKLAAEMGEDGEKE 721
Query: 74 ESEEENKKDDEEMDIDTVKKL 94
EEE +K++EE + + + ++
Sbjct: 722 FQEEEEEKEEEEEEEEPLPEI 742
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,308,541
Number of Sequences: 37866
Number of extensions: 730408
Number of successful extensions: 3269
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 3208
Number of HSP's gapped (non-prelim): 96
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.