Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SNUPN Sequence: fasta or formatted (360aa) NCBI GI: 110611149
Description:

snurportin 1

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt mRNA [360aa] snurportin 1
alt mRNA [360aa] snurportin 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         15           2
 C cysteine            2.2          8           1
 D aspartate           5.8         21           2
 E glutamate           7.8         28           3
 F phenylalanine       3.1         11           1
 G glycine             5.8         21           2
 H histidine           3.9         14           1
 I isoleucine          1.9          7           1
 K lysine              7.5         27           2
 L leucine            10.6         38           2
 M methionine          3.1         11           1
 N asparagine          3.6         13           1
 P proline             5.8         21           1
 Q glutamine           3.9         14           2
 R arginine            4.4         16           4
 S serine              9.4         34           2
 T threonine           4.7         17           2
 V valine              5.8         21           3
 W tryptophan          1.7          6           1
 Y tyrosine            4.7         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   snurportin 1 
SNUPN                 1.000   snurportin 1 
SNUPN                 1.000   snurportin 1 
KIF15                 0.021   kinesin family member 15 
CNGB1                 0.011   cyclic nucleotide gated channel beta 1 isoform a [H...
LOC284288             0.010   PREDICTED: similar to ribosomal protein L24-like [H...
LOC284288             0.010   PREDICTED: similar to ribosomal protein L24-like [Ho...
LOC284288             0.010   PREDICTED: similar to ribosomal protein L24-like [Ho...
RNF8                  0.010   ring finger protein 8 isoform 2 
RNF8                  0.010   ring finger protein 8 isoform 1 
CCDC34                0.010   coiled-coil domain containing 34 isoform 1 
NUDT9                 0.008   nudix-type motif 9 isoform b 
NUDT9                 0.008   nudix-type motif 9 isoform a 
RNGTT                 0.008   RNA guanylyltransferase and 5'-phosphatase 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.007   GRB10 interacting GYF protein 2 isoform b 
LOC392275             0.007   PREDICTED: similar to sphingomyelin phosphodiestera...
LOC392275             0.007   PREDICTED: similar to sphingomyelin phosphodiestera...
C19orf29              0.007   chromosome 19 open reading frame 29 
C19orf29              0.007   chromosome 19 open reading frame 29 
ZNF280B               0.007   zinc finger protein 280B 
ZNF280A               0.007   zinc finger protein 280A 
ZC3H13                0.007   zinc finger CCCH-type containing 13 
KRT1                  0.007   keratin 1 
C10orf4               0.007   FRA10AC1 protein 
UPF3A                 0.007   UPF3 regulator of nonsense transcripts homolog A iso...
UPF3A                 0.007   UPF3 regulator of nonsense transcripts homolog A iso...
WDR52                 0.007   WD repeat domain 52 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press