Guide to the Human Genome
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Name: BCOR Sequence: fasta or formatted (1721aa) NCBI GI: 21071037
Description:

BCL-6 interacting corepressor isoform a

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [1721aa] BCL-6 interacting corepressor isoform a
alt prot [1703aa] BCL-6 interacting corepressor isoform b
alt prot [1755aa] BCL-6 interacting corepressor isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8        134           2
 C cysteine            1.5         26           1
 D aspartate           5.4         93           5
 E glutamate           7.3        125           3
 F phenylalanine       2.3         40           1
 G glycine             6.0        104           2
 H histidine           2.3         40           1
 I isoleucine          2.6         45           2
 K lysine              6.3        109           2
 L leucine             8.7        149           3
 M methionine          1.6         28           2
 N asparagine          4.0         69           2
 P proline            10.2        175           3
 Q glutamine           3.6         62           2
 R arginine            5.3         92           3
 S serine             10.5        180           3
 T threonine           5.1         87           2
 V valine              5.8         99           2
 W tryptophan          0.8         14           1
 Y tyrosine            2.9         50           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BCL-6 interacting corepressor isoform a 
BCOR                  1.000   BCL-6 interacting corepressor isoform a 
BCOR                  0.995   BCL-6 interacting corepressor isoform c 
BCOR                  0.986   BCL-6 interacting corepressor isoform b 
BCORL1                0.086   BCL6 co-repressor-like 1 
ANKRD11               0.021   ankyrin repeat domain 11 
BARD1                 0.018   BRCA1 associated RING domain 1 
ANKRD31               0.017   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.017   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.017   PREDICTED: ankyrin repeat domain 31 
ANKRD12               0.014   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.014   ankyrin repeat domain 12 isoform 1 
TNKS2                 0.013   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
OSBPL1A               0.013   oxysterol-binding protein-like 1A isoform B 
NFKBIL2               0.013   NF-kappa-B inhibitor-like protein 2 
ACBD6                 0.013   acyl-coenzyme A binding domain containing 6 
ANKRD32               0.012   ankyrin repeat domain 32 
ANK3                  0.012   ankyrin 3 isoform 1 
RAI14                 0.012   retinoic acid induced 14 isoform d 
RAI14                 0.012   retinoic acid induced 14 isoform c 
RAI14                 0.012   retinoic acid induced 14 isoform b 
RAI14                 0.012   retinoic acid induced 14 isoform a 
RAI14                 0.012   retinoic acid induced 14 isoform a 
RAI14                 0.012   retinoic acid induced 14 isoform a 
TNKS                  0.012   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
ANK1                  0.012   ankyrin 1 isoform 9 
ANK1                  0.012   ankyrin 1 isoform 1 
ANK1                  0.012   ankyrin 1 isoform 3 
ANK1                  0.012   ankyrin 1 isoform 2 
ANK1                  0.012   ankyrin 1 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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