Guide to the Human Genome
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Name: CYP8B1 Sequence: fasta or formatted (501aa) NCBI GI: 166362724
Description:

cytochrome P450, family 8, subfamily B, polypeptide 1

Referenced in:

Bile Acids and Other Cholesterol Derivatives
Cytochrome P450 Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         22           2
 C cysteine            0.8          4           1
 D aspartate           5.4         27           1
 E glutamate           5.2         26           2
 F phenylalanine       7.6         38           2
 G glycine             7.2         36           2
 H histidine           4.0         20           2
 I isoleucine          2.2         11           1
 K lysine              5.6         28           2
 L leucine            14.0         70           2
 M methionine          4.0         20           2
 N asparagine          1.6          8           1
 P proline             5.4         27           2
 Q glutamine           4.0         20           1
 R arginine            6.0         30           2
 S serine              6.0         30           2
 T threonine           5.0         25           1
 V valine              6.2         31           2
 W tryptophan          2.4         12           1
 Y tyrosine            3.2         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome P450, family 8, subfamily B, polypeptide... 
PTGIS                 0.346   prostaglandin I2 (prostacyclin) synthase 
CYP7A1                0.273   cytochrome P450, family 7, subfamily A, polypeptide...
CYP7B1                0.247   cytochrome P450, family 7, subfamily B, polypeptide 1...
CYP39A1               0.109   cytochrome P450, family 39, subfamily A, polypeptide...
CYP2E1                0.044   cytochrome P450, family 2, subfamily E, polypeptide ...
CYP51A1               0.043   cytochrome P450, family 51, subfamily A, polypeptide ...
CYP2C9                0.041   cytochrome P450, family 2, subfamily C, polypeptide ...
CYP2C19               0.041   cytochrome P450, family 2, subfamily C, polypeptide 1...
CYP2C8                0.041   cytochrome P450, family 2, subfamily C, polypeptide ...
CYP27C1               0.039   cytochrome P450, family 27, subfamily C, polypeptid...
CYP2B6                0.037   cytochrome P450, family 2, subfamily B, polypeptide 6...
CYP27A1               0.036   cytochrome P450, family 27, subfamily A, polypeptide ...
CYP2S1                0.036   cytochrome P450, family 2, subfamily S, polypeptide ...
CYP17A1               0.035   cytochrome P450, family 17 
CYP2C18               0.034   cytochrome P450 family 2 subfamily C polypeptide 18...
CYP2C18               0.034   cytochrome P450 family 2 subfamily C polypeptide 18 ...
CYP4F11               0.034   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F11               0.034   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F12               0.032   cytochrome P450, family 4, subfamily F, polypeptide...
CYP21A2               0.030   cytochrome P450, family 21, subfamily A, polypeptid...
CYP21A2               0.030   cytochrome P450, family 21, subfamily A, polypeptide...
CYP27B1               0.030   cytochrome P450, family 27, subfamily B, polypeptide ...
CYP4V2                0.030   cytochrome P450, family 4, subfamily v, polypeptide...
CYP2A6                0.030   cytochrome P450, family 2, subfamily A, polypeptide...
CYP4F2                0.030   cytochrome P450, family 4, subfamily F, polypeptide ...
CYP3A5                0.029   cytochrome P450, family 3, subfamily A, polypeptide 5...
CYP3A43               0.028   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP26A1               0.027   cytochrome P450, family 26, subfamily A, polypeptide...
CYP3A4                0.026   cytochrome P450, family 3, subfamily A, polypeptide ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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