Guide to the Human Genome
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Name: CYP26A1 Sequence: fasta or formatted (497aa) NCBI GI: 16933530
Description:

cytochrome P450, family 26, subfamily A, polypeptide 1 isoform 1

Referenced in:

Cytochrome P450 Enzymes
Stem Cells and Early Development

Other entries for this name:
alt prot [428aa] cytochrome P450, family 26, subfamily A, polypeptide 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         29           2
 C cysteine            2.8         14           1
 D aspartate           3.4         17           1
 E glutamate           6.8         34           2
 F phenylalanine       5.2         26           2
 G glycine             7.6         38           3
 H histidine           2.8         14           1
 I isoleucine          5.2         26           1
 K lysine              5.4         27           2
 L leucine            13.5         67           3
 M methionine          2.8         14           1
 N asparagine          2.8         14           1
 P proline             5.4         27           2
 Q glutamine           3.6         18           2
 R arginine            7.0         35           2
 S serine              5.8         29           2
 T threonine           4.4         22           2
 V valine              5.6         28           1
 W tryptophan          1.2          6           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome P450, family 26, subfamily A, polypeptide... 
CYP26A1               0.859   cytochrome P450, family 26, subfamily A, polypeptide...
CYP26B1               0.381   cytochrome P450, family 26, subfamily b, polypeptide ...
CYP26C1               0.373   cytochrome P450, family 26, subfamily C, polypeptide...
CYP4V2                0.098   cytochrome P450, family 4, subfamily v, polypeptide...
CYP51A1               0.092   cytochrome P450, family 51, subfamily A, polypeptide ...
CYP4A11               0.086   cytochrome P450, family 4, subfamily A, polypeptide...
CYP4A22               0.085   cytochrome P450, family 4, subfamily A, polypeptide ...
CYP51A1               0.079   cytochrome P450, family 51, subfamily A, polypeptid...
CYP4F3                0.078   cytochrome P450, family 4, subfamily F, polypeptide...
CYP3A43               0.076   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP4F11               0.076   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP4F11               0.076   cytochrome P450 family 4 subfamily F polypeptide 11...
CYP3A7                0.074   cytochrome P450, family 3, subfamily A, polypeptide 7...
CYP4F2                0.073   cytochrome P450, family 4, subfamily F, polypeptide ...
CYP4F12               0.073   cytochrome P450, family 4, subfamily F, polypeptide...
CYP4F22               0.072   cytochrome P450, family 4, subfamily F, polypeptide...
CYP3A4                0.071   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A43               0.071   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP46A1               0.071   cytochrome P450, family 46 
CYP4X1                0.071   cytochrome P450, family 4, subfamily X, polypeptide ...
CYP4B1                0.070   cytochrome P450, family 4, subfamily B, polypeptide...
CYP3A5                0.068   cytochrome P450, family 3, subfamily A, polypeptide 5...
CYP4F8                0.068   cytochrome P450, family 4, subfamily F, polypeptide 8...
CYP4B1                0.067   cytochrome P450, family 4, subfamily B, polypeptide...
CYP4Z1                0.067   cytochrome P450 4Z1 
CYP2S1                0.063   cytochrome P450, family 2, subfamily S, polypeptide ...
CYP24A1               0.062   cytochrome P450 family 24 subfamily A polypeptide 1 ...
CYP27C1               0.062   cytochrome P450, family 27, subfamily C, polypeptid...
CYP27B1               0.057   cytochrome P450, family 27, subfamily B, polypeptide ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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