Guide to the Human Genome
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Name: CYP27B1 Sequence: fasta or formatted (508aa) NCBI GI: 4503213
Description:

cytochrome P450, family 27, subfamily B, polypeptide 1

Referenced in:

Cytochrome P450 Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         50           3
 C cysteine            1.8          9           1
 D aspartate           2.6         13           1
 E glutamate           6.9         35           2
 F phenylalanine       4.1         21           1
 G glycine             7.3         37           2
 H histidine           3.1         16           1
 I isoleucine          2.0         10           2
 K lysine              2.0         10           1
 L leucine            13.0         66           3
 M methionine          1.4          7           1
 N asparagine          1.8          9           2
 P proline             8.1         41           2
 Q glutamine           3.9         20           1
 R arginine            9.6         49           2
 S serine              6.1         31           2
 T threonine           5.3         27           1
 V valine              7.3         37           2
 W tryptophan          1.8          9           1
 Y tyrosine            2.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome P450, family 27, subfamily B, polypeptide ... 
CYP27A1               0.338   cytochrome P450, family 27, subfamily A, polypeptide ...
CYP27C1               0.272   cytochrome P450, family 27, subfamily C, polypeptid...
CYP24A1               0.218   cytochrome P450 family 24 subfamily A polypeptide 1 ...
CYP11A1               0.210   cytochrome P450, family 11, subfamily A, polypeptid...
CYP11B1               0.186   cytochrome P450, family 11, subfamily B, polypeptide...
CYP11B2               0.184   cytochrome P450, family 11, subfamily B, polypeptid...
CYP24A1               0.155   cytochrome P450 family 24 subfamily A polypeptide 1...
CYP11A1               0.155   cytochrome P450, family 11, subfamily A, polypeptid...
CYP11B1               0.120   cytochrome P450, family 11, subfamily B, polypeptide...
CYP3A5                0.119   cytochrome P450, family 3, subfamily A, polypeptide 5...
CYP3A4                0.114   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP3A7                0.099   cytochrome P450, family 3, subfamily A, polypeptide 7...
CYP3A43               0.089   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP4V2                0.088   cytochrome P450, family 4, subfamily v, polypeptide...
CYP3A43               0.086   cytochrome P450, family 3, subfamily A, polypeptide ...
CYP4A11               0.085   cytochrome P450, family 4, subfamily A, polypeptide...
CYP2J2                0.084   cytochrome P450, family 2, subfamily J, polypeptide ...
CYP46A1               0.084   cytochrome P450, family 46 
CYP4A22               0.081   cytochrome P450, family 4, subfamily A, polypeptide ...
CYP2U1                0.080   cytochrome P450, family 2, subfamily U, polypeptide ...
TBXAS1                0.079   thromboxane A synthase 1, platelet isoform TXS-I [H...
TBXAS1                0.079   thromboxane A synthase 1, platelet isoform TXS-I [H...
CYP4X1                0.077   cytochrome P450, family 4, subfamily X, polypeptide ...
CYP2E1                0.076   cytochrome P450, family 2, subfamily E, polypeptide ...
CYP4F8                0.076   cytochrome P450, family 4, subfamily F, polypeptide 8...
CYP21A2               0.076   cytochrome P450, family 21, subfamily A, polypeptid...
CYP21A2               0.076   cytochrome P450, family 21, subfamily A, polypeptide...
CYP2A7                0.076   cytochrome P450, family 2, subfamily A, polypeptide ...
CYP2A7                0.076   cytochrome P450, family 2, subfamily A, polypeptide ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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