Guide to the Human Genome
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Name: GJB6 Sequence: fasta or formatted (261aa) NCBI GI: 158966717
Description:

gap junction protein, beta 6

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt mRNA [261aa] gap junction protein, beta 6
alt mRNA [261aa] gap junction protein, beta 6
alt mRNA [261aa] gap junction protein, beta 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         13           2
 C cysteine            3.4          9           1
 D aspartate           3.8         10           1
 E glutamate           5.0         13           1
 F phenylalanine       7.7         20           2
 G glycine             4.6         12           2
 H histidine           3.4          9           1
 I isoleucine          8.0         21           2
 K lysine              6.1         16           2
 L leucine             8.0         21           3
 M methionine          2.7          7           1
 N asparagine          4.6         12           1
 P proline             3.4          9           1
 Q glutamine           3.4          9           1
 R arginine            5.0         13           2
 S serine              5.7         15           2
 T threonine           5.7         15           2
 V valine              8.0         21           2
 W tryptophan          2.7          7           2
 Y tyrosine            3.4          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gap junction protein, beta 6 
GJB6                  1.000   gap junction protein, beta 6 
GJB6                  1.000   gap junction protein, beta 6 
GJB6                  1.000   gap junction protein, beta 6 
GJB2                  0.682   gap junction protein beta 2 
GJB1                  0.569   gap junction protein, beta 1, 32kDa 
GJB1                  0.569   gap junction protein, beta 1, 32kDa 
GJB4                  0.444   gap junction protein, beta 4 
GJB3                  0.441   connexin 31 
GJB3                  0.441   connexin 31 
GJB5                  0.437   gap junction protein, beta 5, 31.1kDa 
GJB7                  0.398   gap junction protein, beta 7, 25kDa 
GJA8                  0.391   connexin 50 
GJA4                  0.364   connexin 37 
GJA3                  0.362   connexin 46 
GJA1                  0.347   connexin 43 
GJA9                  0.345   gap junction protein, alpha 9, 59kDa 
GJA5                  0.331   connexin 40 
GJA5                  0.331   connexin 40 
GJA10                 0.328   gap junction protein, alpha 10 
GJC1                  0.259   connexin 45 
GJC1                  0.259   connexin 45 
GJD2                  0.245   gap junction protein, delta 2, 36kDa 
GJD3                  0.234   gap junction protein, delta 3, 31.9kDa 
GJD4                  0.211   connexin40.1 
GJC3                  0.195   gap junction protein, gamma 3, 30.2kDa 
GJC2                  0.167   gap junction protein, gamma 2, 47kDa 
LOC100128334          0.111   PREDICTED: similar to hCG1770601 
LOC100128334          0.111   PREDICTED: similar to hCG1770601 
LOC100128334          0.111   PREDICTED: similar to hCG1770601 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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