Guide to the Human Genome
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Name: GJC1 Sequence: fasta or formatted (396aa) NCBI GI: 122939172
Description:

connexin 45

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt mRNA [396aa] connexin 45
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         27           2
 C cysteine            1.8          7           1
 D aspartate           3.8         15           1
 E glutamate           8.3         33           2
 F phenylalanine       4.0         16           1
 G glycine             5.8         23           2
 H histidine           3.3         13           1
 I isoleucine          5.8         23           2
 K lysine              6.8         27           2
 L leucine             8.6         34           3
 M methionine          2.8         11           2
 N asparagine          4.3         17           2
 P proline             5.3         21           2
 Q glutamine           4.8         19           2
 R arginine            5.1         20           3
 S serine              6.3         25           2
 T threonine           4.5         18           1
 V valine              5.3         21           1
 W tryptophan          1.8          7           1
 Y tyrosine            4.8         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   connexin 45 
GJC1                  1.000   connexin 45 
GJC2                  0.420   gap junction protein, gamma 2, 47kDa 
GJA3                  0.277   connexin 46 
GJA8                  0.269   connexin 50 
GJA10                 0.269   gap junction protein, alpha 10 
GJA5                  0.251   connexin 40 
GJA5                  0.251   connexin 40 
GJA4                  0.250   connexin 37 
GJA9                  0.250   gap junction protein, alpha 9, 59kDa 
GJD2                  0.244   gap junction protein, delta 2, 36kDa 
GJA1                  0.242   connexin 43 
GJC3                  0.193   gap junction protein, gamma 3, 30.2kDa 
GJD3                  0.187   gap junction protein, delta 3, 31.9kDa 
GJB2                  0.184   gap junction protein beta 2 
GJB1                  0.184   gap junction protein, beta 1, 32kDa 
GJB1                  0.184   gap junction protein, beta 1, 32kDa 
GJB6                  0.170   gap junction protein, beta 6 
GJB6                  0.170   gap junction protein, beta 6 
GJB6                  0.170   gap junction protein, beta 6 
GJB6                  0.170   gap junction protein, beta 6 
GJB7                  0.167   gap junction protein, beta 7, 25kDa 
GJB4                  0.164   gap junction protein, beta 4 
GJB5                  0.150   gap junction protein, beta 5, 31.1kDa 
GJD4                  0.148   connexin40.1 
GJB3                  0.143   connexin 31 
GJB3                  0.143   connexin 31 
LOC100128334          0.110   PREDICTED: similar to hCG1770601 
LOC100128334          0.110   PREDICTED: similar to hCG1770601 
LOC100128334          0.110   PREDICTED: similar to hCG1770601 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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