Guide to the Human Genome
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Name: GJD2 Sequence: fasta or formatted (321aa) NCBI GI: 10190698
Description:

gap junction protein, delta 2, 36kDa

Referenced in:

Gap Junctions and Tight Junctions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         16           2
 C cysteine            3.1         10           1
 D aspartate           2.8          9           2
 E glutamate           6.5         21           1
 F phenylalanine       4.7         15           1
 G glycine             8.1         26           4
 H histidine           1.6          5           1
 I isoleucine          7.2         23           2
 K lysine              4.7         15           2
 L leucine             8.4         27           2
 M methionine          1.6          5           1
 N asparagine          3.7         12           1
 P proline             4.4         14           2
 Q glutamine           4.7         15           2
 R arginine            7.2         23           2
 S serine              6.5         21           2
 T threonine           5.6         18           1
 V valine              9.3         30           3
 W tryptophan          0.9          3           1
 Y tyrosine            4.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gap junction protein, delta 2, 36kDa 
GJC2                  0.315   gap junction protein, gamma 2, 47kDa 
GJA8                  0.312   connexin 50 
GJC1                  0.309   connexin 45 
GJC1                  0.309   connexin 45 
GJA3                  0.304   connexin 46 
GJA5                  0.282   connexin 40 
GJA5                  0.282   connexin 40 
GJA10                 0.274   gap junction protein, alpha 10 
GJA4                  0.267   connexin 37 
GJA9                  0.264   gap junction protein, alpha 9, 59kDa 
GJA1                  0.254   connexin 43 
GJB6                  0.205   gap junction protein, beta 6 
GJB6                  0.205   gap junction protein, beta 6 
GJB6                  0.205   gap junction protein, beta 6 
GJB6                  0.205   gap junction protein, beta 6 
GJC3                  0.184   gap junction protein, gamma 3, 30.2kDa 
GJD3                  0.168   gap junction protein, delta 3, 31.9kDa 
GJB1                  0.141   gap junction protein, beta 1, 32kDa 
GJB1                  0.141   gap junction protein, beta 1, 32kDa 
GJB2                  0.131   gap junction protein beta 2 
GJB4                  0.131   gap junction protein, beta 4 
GJB3                  0.123   connexin 31 
GJB3                  0.123   connexin 31 
GJB5                  0.120   gap junction protein, beta 5, 31.1kDa 
LOC100128334          0.110   PREDICTED: similar to hCG1770601 
LOC100128334          0.110   PREDICTED: similar to hCG1770601 
LOC100128334          0.110   PREDICTED: similar to hCG1770601 
LOC100128334          0.110   PREDICTED: similar to hCG1770601 
GJB7                  0.110   gap junction protein, beta 7, 25kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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