Guide to the Human Genome
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Name: GJA5 Sequence: fasta or formatted (358aa) NCBI GI: 6631083
Description:

connexin 40

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt mRNA [358aa] connexin 40
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         18           2
 C cysteine            3.1         11           1
 D aspartate           2.8         10           2
 E glutamate           5.9         21           2
 F phenylalanine       5.0         18           2
 G glycine             7.8         28           2
 H histidine           3.4         12           1
 I isoleucine          4.5         16           2
 K lysine              4.5         16           2
 L leucine             8.4         30           3
 M methionine          2.5          9           1
 N asparagine          3.9         14           2
 P proline             5.6         20           3
 Q glutamine           5.6         20           2
 R arginine            6.1         22           2
 S serine              7.5         27           2
 T threonine           4.7         17           2
 V valine              8.7         31           2
 W tryptophan          1.7          6           1
 Y tyrosine            3.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   connexin 40 
GJA5                  1.000   connexin 40 
GJA8                  0.400   connexin 50 
GJA3                  0.393   connexin 46 
GJA4                  0.350   connexin 37 
GJA9                  0.350   gap junction protein, alpha 9, 59kDa 
GJA10                 0.337   gap junction protein, alpha 10 
GJA1                  0.337   connexin 43 
GJC1                  0.277   connexin 45 
GJC1                  0.277   connexin 45 
GJB2                  0.247   gap junction protein beta 2 
GJD2                  0.245   gap junction protein, delta 2, 36kDa 
GJC2                  0.245   gap junction protein, gamma 2, 47kDa 
GJB6                  0.241   gap junction protein, beta 6 
GJB6                  0.241   gap junction protein, beta 6 
GJB6                  0.241   gap junction protein, beta 6 
GJB6                  0.241   gap junction protein, beta 6 
GJB1                  0.230   gap junction protein, beta 1, 32kDa 
GJB1                  0.230   gap junction protein, beta 1, 32kDa 
GJB4                  0.221   gap junction protein, beta 4 
GJD3                  0.219   gap junction protein, delta 3, 31.9kDa 
GJB5                  0.208   gap junction protein, beta 5, 31.1kDa 
GJB7                  0.194   gap junction protein, beta 7, 25kDa 
GJB3                  0.189   connexin 31 
GJB3                  0.189   connexin 31 
GJD4                  0.166   connexin40.1 
GJC3                  0.153   gap junction protein, gamma 3, 30.2kDa 
LOC100128334          0.086   PREDICTED: similar to hCG1770601 
LOC100128334          0.086   PREDICTED: similar to hCG1770601 
LOC100128334          0.086   PREDICTED: similar to hCG1770601 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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