Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128334 Sequence: fasta or formatted (222aa) NCBI GI: 169171704
Description:

PREDICTED: similar to hCG1770601

Not currently referenced in the text

Other entries for this name:
alt mRNA {222aa} PREDICTED: similar to hCG1770601
alt mRNA {222aa} PREDICTED: similar to hCG1770601
alt mRNA {222aa} PREDICTED: similar to hCG1770601
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         16           2
 C cysteine            3.6          8           1
 D aspartate           3.2          7           3
 E glutamate           5.0         11           2
 F phenylalanine       6.3         14           1
 G glycine             8.6         19           2
 H histidine           1.8          4           1
 I isoleucine          1.8          4           1
 K lysine              2.7          6           1
 L leucine            11.3         25           2
 M methionine          1.8          4           1
 N asparagine          1.4          3           1
 P proline             9.5         21           2
 Q glutamine           3.2          7           2
 R arginine            7.2         16           1
 S serine              6.3         14           1
 T threonine           3.2          7           1
 V valine              9.9         22           2
 W tryptophan          2.7          6           2
 Y tyrosine            3.6          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1770601 
LOC100128334          1.000   PREDICTED: similar to hCG1770601 
LOC100128334          1.000   PREDICTED: similar to hCG1770601 
LOC100128334          1.000   PREDICTED: similar to hCG1770601 
GJC3                  0.348   gap junction protein, gamma 3, 30.2kDa 
GJC1                  0.196   connexin 45 
GJC1                  0.196   connexin 45 
GJC2                  0.182   gap junction protein, gamma 2, 47kDa 
GJA8                  0.160   connexin 50 
GJA3                  0.155   connexin 46 
GJD2                  0.155   gap junction protein, delta 2, 36kDa 
GJA9                  0.148   gap junction protein, alpha 9, 59kDa 
GJA4                  0.146   connexin 37 
GJA10                 0.146   gap junction protein, alpha 10 
GJA5                  0.139   connexin 40 
GJA5                  0.139   connexin 40 
GJD3                  0.139   gap junction protein, delta 3, 31.9kDa 
GJA1                  0.137   connexin 43 
GJB1                  0.137   gap junction protein, beta 1, 32kDa 
GJB1                  0.137   gap junction protein, beta 1, 32kDa 
GJD4                  0.135   connexin40.1 
GJB2                  0.133   gap junction protein beta 2 
GJB6                  0.130   gap junction protein, beta 6 
GJB6                  0.130   gap junction protein, beta 6 
GJB6                  0.130   gap junction protein, beta 6 
GJB6                  0.130   gap junction protein, beta 6 
GJB7                  0.119   gap junction protein, beta 7, 25kDa 
GJB3                  0.115   connexin 31 
GJB3                  0.115   connexin 31 
GJB4                  0.112   gap junction protein, beta 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press