Guide to the Human Genome
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Name: GJB3 Sequence: fasta or formatted (270aa) NCBI GI: 54607056
Description:

connexin 31

Referenced in:

Gap Junctions and Tight Junctions

Other entries for this name:
alt mRNA [270aa] connexin 31
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         18           2
 C cysteine            5.6         15           1
 D aspartate           4.1         11           1
 E glutamate           3.7         10           2
 F phenylalanine       4.8         13           1
 G glycine             5.6         15           2
 H histidine           3.7         10           2
 I isoleucine          5.6         15           2
 K lysine              5.6         15           2
 L leucine            11.1         30           2
 M methionine          1.1          3           1
 N asparagine          4.4         12           2
 P proline             4.8         13           1
 Q glutamine           3.0          8           1
 R arginine            5.9         16           2
 S serine              5.2         14           3
 T threonine           4.4         12           1
 V valine              8.1         22           2
 W tryptophan          2.6          7           2
 Y tyrosine            4.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   connexin 31 
GJB3                  1.000   connexin 31 
GJB4                  0.535   gap junction protein, beta 4 
GJB5                  0.518   gap junction protein, beta 5, 31.1kDa 
GJB2                  0.427   gap junction protein beta 2 
GJB7                  0.422   gap junction protein, beta 7, 25kDa 
GJB6                  0.418   gap junction protein, beta 6 
GJB6                  0.418   gap junction protein, beta 6 
GJB6                  0.418   gap junction protein, beta 6 
GJB6                  0.418   gap junction protein, beta 6 
GJB1                  0.407   gap junction protein, beta 1, 32kDa 
GJB1                  0.407   gap junction protein, beta 1, 32kDa 
GJA4                  0.316   connexin 37 
GJA8                  0.300   connexin 50 
GJA1                  0.298   connexin 43 
GJA3                  0.293   connexin 46 
GJA10                 0.280   gap junction protein, alpha 10 
GJA9                  0.269   gap junction protein, alpha 9, 59kDa 
GJA5                  0.247   connexin 40 
GJA5                  0.247   connexin 40 
GJC1                  0.205   connexin 45 
GJC1                  0.205   connexin 45 
GJD3                  0.200   gap junction protein, delta 3, 31.9kDa 
GJD4                  0.176   connexin40.1 
GJC3                  0.169   gap junction protein, gamma 3, 30.2kDa 
GJC2                  0.149   gap junction protein, gamma 2, 47kDa 
GJD2                  0.140   gap junction protein, delta 2, 36kDa 
LOC100128334          0.093   PREDICTED: similar to hCG1770601 
LOC100128334          0.093   PREDICTED: similar to hCG1770601 
LOC100128334          0.093   PREDICTED: similar to hCG1770601 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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