TMIE 6470

Name: TMIE	Sequence: fasta or formatted (156aa)		NCBI GI: 158631211
Description: transmembrane inner ear protein precursor		Referenced in: Auditory and Vestibular Functions
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.7 12 2 C cysteine 3.2 5 2 D aspartate 3.8 6 1 E glutamate 8.3 13 2 F phenylalanine 2.6 4 1 G glycine 7.1 11 2 H histidine 0.6 1 1 I isoleucine 3.8 6 3 K lysine 14.7 23 9 L leucine 9.0 14 1 M methionine 1.9 3 1 N asparagine 1.9 3 1 P proline 8.3 13 3 Q glutamine 1.3 2 1 R arginine 3.8 6 1 S serine 2.6 4 1 T threonine 5.8 9 1 V valine 10.3 16 2 W tryptophan 1.9 3 1 Y tyrosine 1.3 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 transmembrane inner ear protein precursor MAP1B 0.037 microtubule-associated protein 1B TOP2B 0.037 DNA topoisomerase II, beta isozyme PSMD1 0.034 proteasome 26S non-ATPase subunit 1 LOC100294088 0.027 PREDICTED: hypothetical protein, partial GIMAP7 0.027 GTPase, IMAP family member 7 LOC100294364 0.027 PREDICTED: hypothetical protein EIF5B 0.027 eukaryotic translation initiation factor 5B CWF19L2 0.027 CWF19-like 2, cell cycle control NEFH 0.027 neurofilament, heavy polypeptide 200kDa LOC284422 0.027 hypothetical protein LOC284422 GMDS 0.024 GDP-mannose 4,6-dehydratase CCDC34 0.024 coiled-coil domain containing 34 isoform 1 CNGA1 0.024 cyclic nucleotide gated channel alpha 1 isoform 1 [... CNGA1 0.024 cyclic nucleotide gated channel alpha 1 isoform 2 [H... CCDC80 0.024 steroid-sensitive protein 1 CCDC80 0.024 steroid-sensitive protein 1 C9orf86 0.020 Rab-like GTP-binding protein 1 isoform 1 KDM5A 0.020 retinoblastoma binding protein 2 isoform 1 KDM5A 0.020 retinoblastoma binding protein 2 isoform 2 CHD5 0.020 chromodomain helicase DNA binding protein 5 KCNH3 0.020 potassium voltage-gated channel, subfamily H (eag-re... AP3D1 0.020 adaptor-related protein complex 3, delta 1 subunit ... AP3D1 0.020 adaptor-related protein complex 3, delta 1 subunit ... ATF3 0.020 activating transcription factor 3 isoform 1 ATF3 0.020 activating transcription factor 3 isoform 1 CYLC1 0.020 cylicin, basic protein of sperm head cytoskeleton 1... SLU7 0.020 step II splicing factor SLU7 FAM133A 0.020 hypothetical protein LOC286499 LOC100133599 0.017 PREDICTED: hypothetical protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.