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Search of human proteins with 157738677
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157738677 basement membrane-induced gene isoform 3 [Homo
sapiens]
(643 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157738677 basement membrane-induced gene isoform 3 [Homo sapi... 1303 0.0
gi|87080807 basement membrane-induced gene isoform 1 [Homo sapiens] 438 e-123
gi|58218986 thymocyte selection pathway associated [Homo sapiens] 278 8e-75
gi|87080817 basement membrane-induced gene isoform 2 [Homo sapiens] 160 3e-39
gi|42741652 RPA-binding trans-activator [Homo sapiens] 33 0.81
gi|15718684 RPA-binding trans-activator [Homo sapiens] 33 0.81
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 32 1.4
gi|239747014 PREDICTED: similar to tektin 4 [Homo sapiens] 32 1.8
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 32 2.4
gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro... 32 2.4
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro... 32 2.4
gi|166795264 AE binding protein 2 isoform b [Homo sapiens] 32 2.4
gi|166795262 AE binding protein 2 isoform a [Homo sapiens] 32 2.4
gi|83627721 NIMA-related kinase 5 [Homo sapiens] 31 3.1
gi|110349719 titin isoform N2-A [Homo sapiens] 31 4.0
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 31 4.0
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 31 4.0
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 31 4.0
gi|21218438 GATA zinc finger domain containing 2B [Homo sapiens] 31 4.0
gi|32698786 zinc finger protein 227 [Homo sapiens] 30 5.3
gi|164419758 bromodomain containing 2 [Homo sapiens] 30 6.9
gi|4826806 bromodomain containing 2 [Homo sapiens] 30 6.9
gi|31543392 peroxisome proliferator-activated receptor gamma, co... 30 6.9
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 30 6.9
gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens] 30 9.0
gi|221316595 cadherin 17 precursor [Homo sapiens] 30 9.0
gi|221316593 cadherin 17 precursor [Homo sapiens] 30 9.0
gi|11067749 bromodomain containing protein 3 [Homo sapiens] 30 9.0
gi|34878787 ring finger protein 25 [Homo sapiens] 30 9.0
>gi|157738677 basement membrane-induced gene isoform 3 [Homo
sapiens]
Length = 643
Score = 1303 bits (3372), Expect = 0.0
Identities = 643/643 (100%), Positives = 643/643 (100%)
Query: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
Sbjct: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
Query: 61 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE 120
VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE
Sbjct: 61 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE 120
Query: 121 GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ 180
GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ
Sbjct: 121 GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ 180
Query: 181 VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHMRRTIVKIPSTLEVDVEDVTASSRH 240
VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHMRRTIVKIPSTLEVDVEDVTASSRH
Sbjct: 181 VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHMRRTIVKIPSTLEVDVEDVTASSRH 240
Query: 241 VHFIKPLLLSEVLAWEGPFPLSMEILEVPEGRPIFLSPWVGSLQKGQRLCVYGLASPPWR 300
VHFIKPLLLSEVLAWEGPFPLSMEILEVPEGRPIFLSPWVGSLQKGQRLCVYGLASPPWR
Sbjct: 241 VHFIKPLLLSEVLAWEGPFPLSMEILEVPEGRPIFLSPWVGSLQKGQRLCVYGLASPPWR 300
Query: 301 VLASSKGRKVPRHFLVSGGYQGKLRRRPREFPTAYDLLGAFQPGRPLRVVATKDCEGERE 360
VLASSKGRKVPRHFLVSGGYQGKLRRRPREFPTAYDLLGAFQPGRPLRVVATKDCEGERE
Sbjct: 301 VLASSKGRKVPRHFLVSGGYQGKLRRRPREFPTAYDLLGAFQPGRPLRVVATKDCEGERE 360
Query: 361 ENPEFTSLAVGDRLEVLGPGQAHGAQGSDVDVLVCQRLSDQAGEDEEEECKEEAESPERV 420
ENPEFTSLAVGDRLEVLGPGQAHGAQGSDVDVLVCQRLSDQAGEDEEEECKEEAESPERV
Sbjct: 361 ENPEFTSLAVGDRLEVLGPGQAHGAQGSDVDVLVCQRLSDQAGEDEEEECKEEAESPERV 420
Query: 421 LLPFHFPGSFVEEMSDSRRYSLADLTAQFSLPCEVKVVAKDTSHPTDPLTSFLGLRLEEK 480
LLPFHFPGSFVEEMSDSRRYSLADLTAQFSLPCEVKVVAKDTSHPTDPLTSFLGLRLEEK
Sbjct: 421 LLPFHFPGSFVEEMSDSRRYSLADLTAQFSLPCEVKVVAKDTSHPTDPLTSFLGLRLEEK 480
Query: 481 ITEPFLVVSLDSEPGMCFEIPPRWLDLTVVKAKGQPDLPEGSLPIATVEELTDTFYYRLR 540
ITEPFLVVSLDSEPGMCFEIPPRWLDLTVVKAKGQPDLPEGSLPIATVEELTDTFYYRLR
Sbjct: 481 ITEPFLVVSLDSEPGMCFEIPPRWLDLTVVKAKGQPDLPEGSLPIATVEELTDTFYYRLR 540
Query: 541 KLPACEIQAPPPRPPKNQGLSKQRRHSSEGGVKSSQVLGLQQHARLPKPKAKTLPEFIKD 600
KLPACEIQAPPPRPPKNQGLSKQRRHSSEGGVKSSQVLGLQQHARLPKPKAKTLPEFIKD
Sbjct: 541 KLPACEIQAPPPRPPKNQGLSKQRRHSSEGGVKSSQVLGLQQHARLPKPKAKTLPEFIKD 600
Query: 601 GSSTYSKIPAHRKGHRPAKPQRQDLDDDEHDYEEILEQFQKTI 643
GSSTYSKIPAHRKGHRPAKPQRQDLDDDEHDYEEILEQFQKTI
Sbjct: 601 GSSTYSKIPAHRKGHRPAKPQRQDLDDDEHDYEEILEQFQKTI 643
>gi|87080807 basement membrane-induced gene isoform 1 [Homo sapiens]
Length = 260
Score = 438 bits (1126), Expect = e-123
Identities = 215/216 (99%), Positives = 216/216 (100%)
Query: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
Sbjct: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
Query: 61 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE 120
VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE
Sbjct: 61 VCENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRIVTE 120
Query: 121 GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ 180
GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ
Sbjct: 121 GRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTLLQ 180
Query: 181 VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHM 216
VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMH+
Sbjct: 181 VLQDPALKDLVLTCPTLPWHSLILRPQYEIQAIMHI 216
>gi|58218986 thymocyte selection pathway associated [Homo sapiens]
Length = 641
Score = 278 bits (712), Expect = 8e-75
Identities = 197/592 (33%), Positives = 305/592 (51%), Gaps = 62/592 (10%)
Query: 6 LQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKVVC--- 62
L++FV +LD +LPRVL + +G+Y EGSIYE+ GNECC STG++IK+T ++++K++
Sbjct: 5 LEEFVHSLDLRTLPRVLEIQAGIYLEGSIYEMFGNECCFSTGEVIKITGLKVKKIIAEIC 64
Query: 63 ---ENPKTSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQL-PTCFMSTHRIV 118
E ++ Q EL NF G F + Y T+EE+ +L CF I
Sbjct: 65 EQIEGCESLQPFELPMNFPGLFKIVADKTPYLTMEEITRTIHIGPSRLGHPCFYHQKDIK 124
Query: 119 TEGRVVTEDQLLMLEAVVMHLGIRSARCVLGMEGQQVILHLPLSQKGPFWTWEPSAPRTL 178
E ++ + + +ML +V G C + Q +LPLSQ+G F+ E TL
Sbjct: 125 LENLIIKQGEQIMLNSVEEIDGEIMVSCAVARNHQTHSFNLPLSQEGEFYECEDERIYTL 184
Query: 179 LQVLQDPALKD----LVLTCPTLPWHS-----------LILRPQYEIQAIMHMRRTIVKI 223
++++ K+ + LT + W S LIL+P YEIQ +M R+ I++I
Sbjct: 185 KEIVEWKIPKNRTRTVNLTDFSNKWDSTNPFPKDFYGTLILKPVYEIQGVMKFRKDIIRI 244
Query: 224 PSTLEVDVEDVTASSRHVHFIKPLLLSEVLAWEG-PFPLSMEILEVPEGRPIFLSPWVGS 282
+L+V+V+D+T S F++ L ++ FP+ E++E PEG + S
Sbjct: 245 LPSLDVEVKDITDSYDANWFLQLLSTEDLFEMTSKEFPIVTEVIEAPEGNHLPQS----I 300
Query: 283 LQKGQRLCVYGLASPPWRVLASSKGRKVP-RHFLVSGGYQGKLRRRPREFPTAYDLLGAF 341
LQ G+ + ++ R+LAS P RHFL+ Y+GK +RRPREFPTAYDL A
Sbjct: 301 LQPGKTIVIHKKYQAS-RILASEIRSNFPKRHFLIPTSYKGKFKRRPREFPTAYDLEIAK 359
Query: 342 QPGRPLRVVATKDCEGEREENPEFTSLAVGDRLEVLGPGQAHGAQGSD---------VDV 392
PL VVATK + + +S++VGD+ V H ++ ++ V+V
Sbjct: 360 SEKEPLHVVATKAFHSPHD---KLSSVSVGDQFLV------HQSETTEVLCEGIKKVVNV 410
Query: 393 LVCQRLSDQAGEDEEEECKEEAESPERVLLPFHFPGSFVEEMSDSRRYSLADLTAQFSLP 452
L C+++ +S E LLP + G FVE + D ++Y +++L QF LP
Sbjct: 411 LACEKIL--------------KKSYEAALLPLYMEGGFVEVIHDKKQYPISELCKQFRLP 456
Query: 453 CEVKVVAKDTSHPTDPLTSFLGLRLEEKITEPFLVVSLDSEPGMCFEIPPRWLDLTVVKA 512
VKV +D S D L + GL+LEE IT+ +L++S + P C+EIP L++TV
Sbjct: 457 FNVKVSVRDLSIEEDVLAATPGLQLEEDITDSYLLISDFANPTECWEIPVGRLNMTVQLV 516
Query: 513 KGQPDLPEGSLPIATVEELTDTFYYRLRKLPACEIQAPPPRPPKNQGLSKQR 564
E L VEE+T+ YY +R+ + PPPRPPK+ + + +
Sbjct: 517 SNFSRDAEPFLVRTLVEEITEEQYYMMRRYES-SASHPPPRPPKHPSVEETK 567
>gi|87080817 basement membrane-induced gene isoform 2 [Homo
sapiens]
Length = 123
Score = 160 bits (406), Expect = 3e-39
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
Sbjct: 1 MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
Query: 61 VCENPKTSQTMELAPNFQ 78
VCENPKTSQTMELAPNFQ
Sbjct: 61 VCENPKTSQTMELAPNFQ 78
>gi|42741652 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 33.1 bits (74), Expect = 0.81
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 158 HLPLSQKGPFWTWEP----SAPRTLLQVLQDPALKDLVLTCPTLPWHSLILRPQYEIQAI 213
H L ++ W W P S + LL++ D + L P+L H LI ++QA
Sbjct: 9 HSDLEEEEERWEWSPAGLQSYQQALLRISLDKVQRSLGPRAPSLRRHVLIHNTLQQLQAA 68
Query: 214 MHMRRTIVKIPSTLEVDVEDVTASSRHVHFIKPLLLSEVLAWEGP----FPLSMEILEVP 269
+ + P L + ED + S+ ++ L S + E P PL ++ P
Sbjct: 69 LRLAPAPALPPEPLFLGEEDFSLSATIGSILRELDTS-MDGTEPPQNPVTPLGLQNEVPP 127
Query: 270 EGRPIFL 276
+ P+FL
Sbjct: 128 QPDPVFL 134
>gi|15718684 RPA-binding trans-activator [Homo sapiens]
Length = 196
Score = 33.1 bits (74), Expect = 0.81
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 158 HLPLSQKGPFWTWEP----SAPRTLLQVLQDPALKDLVLTCPTLPWHSLILRPQYEIQAI 213
H L ++ W W P S + LL++ D + L P+L H LI ++QA
Sbjct: 9 HSDLEEEEERWEWSPAGLQSYQQALLRISLDKVQRSLGPRAPSLRRHVLIHNTLQQLQAA 68
Query: 214 MHMRRTIVKIPSTLEVDVEDVTASSRHVHFIKPLLLSEVLAWEGP----FPLSMEILEVP 269
+ + P L + ED + S+ ++ L S + E P PL ++ P
Sbjct: 69 LRLAPAPALPPEPLFLGEEDFSLSATIGSILRELDTS-MDGTEPPQNPVTPLGLQNEVPP 127
Query: 270 EGRPIFL 276
+ P+FL
Sbjct: 128 QPDPVFL 134
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 32.3 bits (72), Expect = 1.4
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 11/117 (9%)
Query: 510 VKAKGQPDLPEGSLPIATVEELTDTFYYRLRKLPACEIQAPPPRPPKNQGLSKQRRHSSE 569
+ K QP +P+ P+ TV+E + R P PPP N S +
Sbjct: 630 IPRKHQPSVPKAEEPLKTVQEKK-----KFRHRPEPLFIPPPPSYNPNPAASYSGATLYQ 684
Query: 570 GGVKSSQVLG----LQQHARLPKPKAKTLPEFIKDGSSTYSK--IPAHRKGHRPAKP 620
++S +VLG L LP + ++ GS +S I H G P P
Sbjct: 685 SQLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGAHPQLP 741
>gi|239747014 PREDICTED: similar to tektin 4 [Homo sapiens]
Length = 507
Score = 32.0 bits (71), Expect = 1.8
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 67 TSQTMELAPNFQGYFTPLNTPQSYETLEELVSATTQSSKQLPTCFMSTHRI 117
TS + E AP+ + TP NTP+ LEEL + T ++L S H +
Sbjct: 415 TSSSQEEAPSDKPQLTPPNTPKLVSELEELYKSITALWEKLLQAEQSLHNL 465
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 31.6 bits (70), Expect = 2.4
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 343 PGRPLRVVATKDCEGEREENPEFTSLAVGDRLEVLGPGQAHGAQGSDVDVLVCQRLSDQA 402
P PL TK EG+ + A G++ EV G G + + + ++
Sbjct: 419 PLGPLASSPTKSSEGKD------SGAAEGEKQEV-GDGDCFSEKVEPAEEEAEEEEEEEE 471
Query: 403 GEDEEEECKEEAESPERVLLPFHFPGSFVEEMSD 436
E+EEEE +EE E E FP EE+ D
Sbjct: 472 AEEEEEEEEEEEEEEEDEGCKGLFPSELDEELED 505
>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 31.6 bits (70), Expect = 2.4
Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 17/158 (10%)
Query: 400 DQAGEDE-EEECKEEAESPERVLLPFHFPGSFVEEMSDSRRYSLADLTAQFSLPCEVKVV 458
D+ EDE EEE +E SPE V+E ++S Y +T P E
Sbjct: 146 DEESEDEVEEEQEERQPSPEP-----------VQENANSGYYEAHPVTNGIEEPLEESSH 194
Query: 459 AKDTSHPTDPLTSFLGLRLEEKITEPFLVVSL---DSEPGMCFEIPPRWLDLTVVKAKGQ 515
+ ++ T L ++EEK E S +EP + PP+ V +K
Sbjct: 195 EPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNL 254
Query: 516 PDLPEGSLPIATVEELTDTFYYRLRKLPACEIQAPPPR 553
P P G++ + + + R E+Q+ PPR
Sbjct: 255 P--PSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPR 290
>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
Length = 482
Score = 31.6 bits (70), Expect = 2.4
Identities = 40/158 (25%), Positives = 62/158 (39%), Gaps = 17/158 (10%)
Query: 400 DQAGEDE-EEECKEEAESPERVLLPFHFPGSFVEEMSDSRRYSLADLTAQFSLPCEVKVV 458
D+ EDE EEE +E SPE V+E ++S Y +T P E
Sbjct: 146 DEESEDEVEEEQEERQPSPEP-----------VQENANSGYYEAHPVTNGIEEPLEESSH 194
Query: 459 AKDTSHPTDPLTSFLGLRLEEKITEPFLVVSL---DSEPGMCFEIPPRWLDLTVVKAKGQ 515
+ ++ T L ++EEK E S +EP + PP+ V +K
Sbjct: 195 EPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNL 254
Query: 516 PDLPEGSLPIATVEELTDTFYYRLRKLPACEIQAPPPR 553
P P G++ + + + R E+Q+ PPR
Sbjct: 255 P--PSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPR 290
>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
Length = 517
Score = 31.6 bits (70), Expect = 2.4
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 338 LGAFQPGRPL-----RVVATKDCEGEREENPEFTSLAVGDRLEVLGPGQAHGAQGSDVDV 392
L PG P R ++ E E EE E + AV L G G G G V
Sbjct: 17 LSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGG 76
Query: 393 LVCQRLSD-------QAGEDEEEECKEEAESPE 418
+ +S+ QAGEDE+EE +E E E
Sbjct: 77 GEAETMSEPSPESASQAGEDEDEEEDDEEEEDE 109
>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
Length = 503
Score = 31.6 bits (70), Expect = 2.4
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 338 LGAFQPGRPL-----RVVATKDCEGEREENPEFTSLAVGDRLEVLGPGQAHGAQGSDVDV 392
L PG P R ++ E E EE E + AV L G G G G V
Sbjct: 17 LSPLPPGSPGSAARGRAEPPEEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGG 76
Query: 393 LVCQRLSD-------QAGEDEEEECKEEAESPE 418
+ +S+ QAGEDE+EE +E E E
Sbjct: 77 GEAETMSEPSPESASQAGEDEDEEEDDEEEEDE 109
>gi|83627721 NIMA-related kinase 5 [Homo sapiens]
Length = 708
Score = 31.2 bits (69), Expect = 3.1
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 170 WEPSAPRTLLQVLQDPALKDLVLTCPTLP 198
W+ AP+TLLQ++ A+ D+ TCPT P
Sbjct: 657 WDGGAPQTLLQMM---AVADITSTCPTGP 682
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 30.8 bits (68), Expect = 4.0
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 391 DVLVCQRLSDQAGEDEEEECKEEAESPERVLL----PFHFPGSFVE----EMSDSRRYSL 442
+V+V +RL + E E EE EE E E FH F++ + + R
Sbjct: 10358 EVVVKERLELEVVEAEVEEIPEEEEFHEVEEYFEEGEFHEVEEFIKLEQHRVEEEHRVEK 10417
Query: 443 ADLTAQFSLPCEVKVVAKDTSHPTDPLTSFLGLRLEEKITEP----FLVVSLDSEPGMCF 498
+ EV+V K + P P + EKI P VV P
Sbjct: 10418 VHRVIEVFEAEEVEVFEKPKAPPKGP-------EISEKIIPPKKPPTKVVPRKEPPAKVP 10470
Query: 499 EIPPRWLDLTVVKAKGQPDLPEGSLPIATVEELTDTFYYRLRKLP---ACEIQAPPPRPP 555
E+P + + V+ +P +P +P E L +K+P A + +APPP+ P
Sbjct: 10471 EVPKKIVVEEKVRVPEEPRVPPTKVP----EVLPPKEVVPEKKVPVPPAKKPEAPPPKVP 10526
Query: 556 K 556
+
Sbjct: 10527 E 10527
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 30.8 bits (68), Expect = 4.0
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 516 PDLPEGSLPIATVEELTDTFYYRLRKLPACEIQA-PPPRPPKNQGLSKQRRHSSEGGVKS 574
PDLP+ LP + + Y L LP + PPP PPK++G S+ S+ GG +
Sbjct: 817 PDLPQPHLPPISAPG-SSRIYRPLPPLPIIDPPTEPPPLPPKSRGRSR----STRGGHMN 871
Query: 575 S 575
S
Sbjct: 872 S 872
>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
Length = 1113
Score = 30.8 bits (68), Expect = 4.0
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 543 PACEIQAPPPRPPKNQGLSKQRRHSSEGGV-----KSSQVLGLQQHARLPKPKAKTLPEF 597
P + Q PPP P + L Q G KS+Q + QQ A LP+
Sbjct: 541 PLDKYQPPPPPPREGGSLEHQPFLPGPGPFLAELEKSTQTILGQQRASLPQ--------- 591
Query: 598 IKDGSSTYSKIPAHRKGHRPAKPQRQDLDDDEHDYEEILEQFQKTI 643
++T+ ++ K P +P D + Y+E L+Q ++ +
Sbjct: 592 ----AATFGELSGPLKPGSPYRPPVPRAPDPAYIYDEFLQQRRRLV 633
>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
Length = 1217
Score = 30.8 bits (68), Expect = 4.0
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 18/106 (16%)
Query: 543 PACEIQAPPPRPPKNQGLSKQRRHSSEGGV-----KSSQVLGLQQHARLPKPKAKTLPEF 597
P + Q PPP P + L Q G KS+Q + QQ A LP+
Sbjct: 645 PLDKYQPPPPPPREGGSLEHQPFLPGPGPFLAELEKSTQTILGQQRASLPQ--------- 695
Query: 598 IKDGSSTYSKIPAHRKGHRPAKPQRQDLDDDEHDYEEILEQFQKTI 643
++T+ ++ K P +P D + Y+E L+Q ++ +
Sbjct: 696 ----AATFGELSGPLKPGSPYRPPVPRAPDPAYIYDEFLQQRRRLV 737
>gi|21218438 GATA zinc finger domain containing 2B [Homo sapiens]
Length = 593
Score = 30.8 bits (68), Expect = 4.0
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 544 ACEIQAPPPRPPKNQGLSKQRRHSSEGGVKSSQVLGLQQHARLPKPKAKTLPEFIKDGSS 603
A I P P QGLSK GV+ + LQ H+ + TLP +
Sbjct: 206 AASIVQPSPAHVGQQGLSKLPSRPGAQGVEPQNLRTLQGHSVIRSATNTTLPHMLM-SQR 264
Query: 604 TYSKIPAHRKGHR-PAKP 620
+ PA +G R P KP
Sbjct: 265 VIAPNPAQLQGQRGPPKP 282
>gi|32698786 zinc finger protein 227 [Homo sapiens]
Length = 799
Score = 30.4 bits (67), Expect = 5.3
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 569 EGGVKSSQVLGLQQHARLPKPKAKTLPEFIKDGSSTYSKIPAHRKGHRPAKPQRQDLDDD 628
E G SQ LQ H + + + E G S SK+ H++ H KP R D+
Sbjct: 496 ECGKGFSQASNLQVHQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGK 555
Query: 629 EHDYEEILEQFQ 640
+ Y L+ Q
Sbjct: 556 DFSYSSNLKLHQ 567
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 30.0 bits (66), Expect = 6.9
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 21/96 (21%)
Query: 543 PACEIQAPPPRPP--KNQGLSKQRRHSSEGGVKSSQVLGLQQHARLP---KPKAKTLPEF 597
P + A PP P K +G+ +R + + +L A P +PKA LP
Sbjct: 260 PLLAVTAAPPAQPLAKKKGV---KRKADTTTPTPTAILAPGSPASPPGSLEPKAARLP-- 314
Query: 598 IKDGSSTYSKIPAHRKGHRPAKPQRQDLDDDEHDYE 633
P R+ RP KP R+DL D + ++
Sbjct: 315 -----------PMRRESGRPIKPPRKDLPDSQQQHQ 339
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 30.0 bits (66), Expect = 6.9
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 21/96 (21%)
Query: 543 PACEIQAPPPRPP--KNQGLSKQRRHSSEGGVKSSQVLGLQQHARLP---KPKAKTLPEF 597
P + A PP P K +G+ +R + + +L A P +PKA LP
Sbjct: 260 PLLAVTAAPPAQPLAKKKGV---KRKADTTTPTPTAILAPGSPASPPGSLEPKAARLP-- 314
Query: 598 IKDGSSTYSKIPAHRKGHRPAKPQRQDLDDDEHDYE 633
P R+ RP KP R+DL D + ++
Sbjct: 315 -----------PMRRESGRPIKPPRKDLPDSQQQHQ 339
>gi|31543392 peroxisome proliferator-activated receptor gamma,
coactivator 1 beta [Homo sapiens]
Length = 1023
Score = 30.0 bits (66), Expect = 6.9
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 552 PRPPKNQGLSKQRRHSSEGGVKSSQVLGLQQHARLPKPKAKTLPEFIKDGSSTYSKIPAH 611
PRPPK+ S R S E + + P+P + L ++
Sbjct: 375 PRPPKDSQASPGRPSSVE-----EVRIAASPKSTGPRPSLRPL------------RLEVK 417
Query: 612 RKGHRPAKPQRQDLDDDEHDYEEILEQ 638
R+ RPA+ Q+Q+ +D+E + EE E+
Sbjct: 418 REVRRPARLQQQEEEDEEEEEEEEEEE 444
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 30.0 bits (66), Expect = 6.9
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 540 RKLPACEIQAPPPRP-----PKNQGLSKQRRHSSEGGVKSSQVLGLQQHARLP 587
+K PA + QAPPP+P PK Q +K R E GV L + RLP
Sbjct: 2719 KKTPAPQPQAPPPQPTQPLQPKAQAGAKSRPKKRE-GVHLPTTKELAKRQRLP 2770
>gi|31711992 dihydrolipoamide S-acetyltransferase [Homo sapiens]
Length = 647
Score = 29.6 bits (65), Expect = 9.0
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 476 RLEEKITEPFLVVSLDSEPGMC-FEIPPRWLDLTVVKAKGQPDLPEGSLPIATVEELTDT 534
++ EK++E L+ ++++ FE+ ++ +G D+P G+ VE+ D
Sbjct: 241 KVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADI 300
Query: 535 FY---YRLRKLPACEIQAPPPRPP 555
YR ++ + Q PPP PP
Sbjct: 301 SAFADYRPTEVTDLKPQVPPPTPP 324
>gi|221316595 cadherin 17 precursor [Homo sapiens]
Length = 832
Score = 29.6 bits (65), Expect = 9.0
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 256 EGPFPLSMEILEVPEGRPIFL-SPWVGSLQKGQR 288
EGP P+++++ ++ + RP FL S + GS+++ R
Sbjct: 107 EGPVPITIKVKDINDNRPTFLQSKYEGSVRQNSR 140
>gi|221316593 cadherin 17 precursor [Homo sapiens]
Length = 832
Score = 29.6 bits (65), Expect = 9.0
Identities = 12/34 (35%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 256 EGPFPLSMEILEVPEGRPIFL-SPWVGSLQKGQR 288
EGP P+++++ ++ + RP FL S + GS+++ R
Sbjct: 107 EGPVPITIKVKDINDNRPTFLQSKYEGSVRQNSR 140
>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
Length = 726
Score = 29.6 bits (65), Expect = 9.0
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 525 IATVEELTDTFYYRLRKLPACEIQAP----PPRPPKNQGLSKQR---RHSSEGGVKSSQV 577
+A +L D F R K+P ++AP P P ++G R SS+ G S+
Sbjct: 398 VAMARKLQDVFEMRFAKMPDEPVEAPALPAPAAPMVSKGAESSRSSEESSSDSGSSDSEE 457
Query: 578 LGLQQHARLPKPKAKTLPEFIKDGSSTYSKIPAHRKGHRPAKPQRQDLDDDEHDYEEILE 637
+ A L + + K + E + S P +K + + +++D + ++ ++ E
Sbjct: 458 ERATRLAEL-QEQLKAVHEQLAALSQAPVNKPKKKKEKKEKEKKKKDKEKEKEKHKVKAE 516
Query: 638 QFQK 641
+ +K
Sbjct: 517 EEKK 520
>gi|34878787 ring finger protein 25 [Homo sapiens]
Length = 459
Score = 29.6 bits (65), Expect = 9.0
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 516 PDLPEGSLPIATVEELTDTFYYRLRKLPACEIQAPPPRPPKNQGLSKQRRHSSEGGVKSS 575
P PE ++ ++ + T L PA + PPP P Q + ++ G +
Sbjct: 271 PAEPESAVDVSKGSQPPSTLAAELSTSPAVQSTLPPPLPVATQHICEK----IPGTRSNQ 326
Query: 576 QVLGLQQHARLPKPKAKTLP 595
Q LG Q A L PK P
Sbjct: 327 QRLGETQKAMLDPPKPSRGP 346
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,223,869
Number of Sequences: 37866
Number of extensions: 1464625
Number of successful extensions: 5644
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5588
Number of HSP's gapped (non-prelim): 74
length of query: 643
length of database: 18,247,518
effective HSP length: 109
effective length of query: 534
effective length of database: 14,120,124
effective search space: 7540146216
effective search space used: 7540146216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.