Guide to the Human Genome
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Name: C1orf38 Sequence: fasta or formatted (123aa) NCBI GI: 87080817
Description:

basement membrane-induced gene isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {643aa} basement membrane-induced gene isoform 3
alt prot {260aa} basement membrane-induced gene isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3          9           2
 C cysteine            4.1          5           2
 D aspartate           4.1          5           1
 E glutamate           6.5          8           1
 F phenylalanine       3.3          4           1
 G glycine             5.7          7           1
 H histidine           0.8          1           1
 I isoleucine          3.3          4           1
 K lysine              2.4          3           1
 L leucine             8.9         11           1
 M methionine          1.6          2           1
 N asparagine          2.4          3           1
 P proline             6.5          8           1
 Q glutamine          10.6         13           2
 R arginine            6.5          8           1
 S serine              8.1         10           2
 T threonine           4.9          6           1
 V valine              9.8         12           2
 W tryptophan          0.8          1           1
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   basement membrane-induced gene isoform 2 
C1orf38               0.600   basement membrane-induced gene isoform 3 
C1orf38               0.600   basement membrane-induced gene isoform 1 
THEMIS                0.244   thymocyte selection pathway associated 
FLT4                  0.009   fms-related tyrosine kinase 4 isoform 1 precursor [...
FLT4                  0.009   fms-related tyrosine kinase 4 isoform 2 precursor [...
KBTBD6                0.009   kelch repeat and BTB (POZ) domain-containing 6 [Homo...
SLC7A6OS              0.009   solute carrier family 7, member 6 opposite strand [H...
F8                    0.004   coagulation factor VIII isoform a precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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