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Search of human proteins with 157388967
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157388967 coiled-coil domain containing 87 [Homo sapiens]
(849 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157388967 coiled-coil domain containing 87 [Homo sapiens] 1708 0.0
gi|14149696 SEC31 homolog B [Homo sapiens] 38 0.035
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 35 0.38
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 35 0.38
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 35 0.38
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 35 0.38
gi|15559211 RE1-silencing transcription factor [Homo sapiens] 33 0.85
gi|224458301 family with sequence similarity 186, member A [Homo... 33 1.5
gi|44890059 involucrin [Homo sapiens] 33 1.5
gi|13569901 TSC22 domain family, member 4 [Homo sapiens] 33 1.5
gi|24497453 nucleoporin 88kDa [Homo sapiens] 32 1.9
gi|221316661 oxoglutarate dehydrogenase-like isoform a [Homo sap... 32 2.5
gi|93277115 ataxin 7-like 2 [Homo sapiens] 32 2.5
gi|23943928 hypothetical protein LOC140680 [Homo sapiens] 32 2.5
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 32 3.2
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 32 3.2
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 32 3.2
gi|126032348 hect domain and RLD 2 [Homo sapiens] 31 4.2
gi|117938768 GNAS complex locus alex [Homo sapiens] 31 4.2
gi|169204669 PREDICTED: hypothetical protein LOC400027 [Homo sap... 31 4.2
gi|89036097 PREDICTED: hypothetical protein LOC400027 isoform 4 ... 31 4.2
gi|89035494 PREDICTED: hypothetical protein LOC400027 isoform 2 ... 31 4.2
gi|66529407 tensin [Homo sapiens] 31 4.2
gi|33383235 minichromosome maintenance complex component 10 isof... 31 4.2
gi|33383237 minichromosome maintenance complex component 10 isof... 31 4.2
gi|208022641 elongin A [Homo sapiens] 31 4.2
gi|13699836 matrilin 4 isoform 3 precursor [Homo sapiens] 31 4.2
gi|13699834 matrilin 4 isoform 2 precursor [Homo sapiens] 31 4.2
gi|13699830 matrilin 4 isoform 1 precursor [Homo sapiens] 31 4.2
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 31 5.5
>gi|157388967 coiled-coil domain containing 87 [Homo sapiens]
Length = 849
Score = 1708 bits (4423), Expect = 0.0
Identities = 849/849 (100%), Positives = 849/849 (100%)
Query: 1 MMEPPKPEPELQRFYHRLLRPLSLFPTRTTSPEPQKRPPQEGRILQSFPLAKLTVASLCS 60
MMEPPKPEPELQRFYHRLLRPLSLFPTRTTSPEPQKRPPQEGRILQSFPLAKLTVASLCS
Sbjct: 1 MMEPPKPEPELQRFYHRLLRPLSLFPTRTTSPEPQKRPPQEGRILQSFPLAKLTVASLCS 60
Query: 61 QVAKLLAGSGIAAGVPPEARLRLIKVILDELKCSWREPPAELSLSHKNNQKLRKRLEAYV 120
QVAKLLAGSGIAAGVPPEARLRLIKVILDELKCSWREPPAELSLSHKNNQKLRKRLEAYV
Sbjct: 61 QVAKLLAGSGIAAGVPPEARLRLIKVILDELKCSWREPPAELSLSHKNNQKLRKRLEAYV 120
Query: 121 LLSSEQLFLRYLHLLVTMSTPRGVFTESATLTRLAASLARDCTLFLTSPNVYRGLLADFQ 180
LLSSEQLFLRYLHLLVTMSTPRGVFTESATLTRLAASLARDCTLFLTSPNVYRGLLADFQ
Sbjct: 121 LLSSEQLFLRYLHLLVTMSTPRGVFTESATLTRLAASLARDCTLFLTSPNVYRGLLADFQ 180
Query: 181 ALLRAEQASGDVDKLHPVCPAGTFKLCPIPWPHSTGFAQVQCSNLNLNYLIQLSRPPEFL 240
ALLRAEQASGDVDKLHPVCPAGTFKLCPIPWPHSTGFAQVQCSNLNLNYLIQLSRPPEFL
Sbjct: 181 ALLRAEQASGDVDKLHPVCPAGTFKLCPIPWPHSTGFAQVQCSNLNLNYLIQLSRPPEFL 240
Query: 241 NEPGRMDPVKELKSIPRLKRKKPFHWLPSIGKKREIDISSSQMVSLPSYPVAPTSRASPS 300
NEPGRMDPVKELKSIPRLKRKKPFHWLPSIGKKREIDISSSQMVSLPSYPVAPTSRASPS
Sbjct: 241 NEPGRMDPVKELKSIPRLKRKKPFHWLPSIGKKREIDISSSQMVSLPSYPVAPTSRASPS 300
Query: 301 PFCPELRRGQSMPSLREGWRLADELGLPPLPSRPLTPLVLATESKPELTGLIVAEDLKQL 360
PFCPELRRGQSMPSLREGWRLADELGLPPLPSRPLTPLVLATESKPELTGLIVAEDLKQL
Sbjct: 301 PFCPELRRGQSMPSLREGWRLADELGLPPLPSRPLTPLVLATESKPELTGLIVAEDLKQL 360
Query: 361 IKKMKLEGTRYPPLDSGLPPLLGVVTRHPAAGHRLEELEKMLRNLQEEEASGQWDPQPPK 420
IKKMKLEGTRYPPLDSGLPPLLGVVTRHPAAGHRLEELEKMLRNLQEEEASGQWDPQPPK
Sbjct: 361 IKKMKLEGTRYPPLDSGLPPLLGVVTRHPAAGHRLEELEKMLRNLQEEEASGQWDPQPPK 420
Query: 421 SFPLHPQPVTITLKLRNEVVVQAAAVRVSDRNFLDSFHIEGAGALYNHLAGELDPKAIEK 480
SFPLHPQPVTITLKLRNEVVVQAAAVRVSDRNFLDSFHIEGAGALYNHLAGELDPKAIEK
Sbjct: 421 SFPLHPQPVTITLKLRNEVVVQAAAVRVSDRNFLDSFHIEGAGALYNHLAGELDPKAIEK 480
Query: 481 MDIDNFVGSTTREVYKELMSHVSSDHLHFDQGPLVEPAADKDWSTFLSSAFLRQEKQPQI 540
MDIDNFVGSTTREVYKELMSHVSSDHLHFDQGPLVEPAADKDWSTFLSSAFLRQEKQPQI
Sbjct: 481 MDIDNFVGSTTREVYKELMSHVSSDHLHFDQGPLVEPAADKDWSTFLSSAFLRQEKQPQI 540
Query: 541 INPELVGLYSQRANTLQSNTKKMPSLPSLQATKSWEKWSNKASLMNSWKTTLSVDDYFKY 600
INPELVGLYSQRANTLQSNTKKMPSLPSLQATKSWEKWSNKASLMNSWKTTLSVDDYFKY
Sbjct: 541 INPELVGLYSQRANTLQSNTKKMPSLPSLQATKSWEKWSNKASLMNSWKTTLSVDDYFKY 600
Query: 601 LTNHETDFLHVIFQMHEEEVPVEIVAPARESLEIQHPPPLLEDEEPDFVPGEWDWNTVLE 660
LTNHETDFLHVIFQMHEEEVPVEIVAPARESLEIQHPPPLLEDEEPDFVPGEWDWNTVLE
Sbjct: 601 LTNHETDFLHVIFQMHEEEVPVEIVAPARESLEIQHPPPLLEDEEPDFVPGEWDWNTVLE 660
Query: 661 HRLGAGKTPHLGEPHKILSLQKHLEQLWSVLEVPDKDQVDMTIKYSSKARLRQLPSLVNA 720
HRLGAGKTPHLGEPHKILSLQKHLEQLWSVLEVPDKDQVDMTIKYSSKARLRQLPSLVNA
Sbjct: 661 HRLGAGKTPHLGEPHKILSLQKHLEQLWSVLEVPDKDQVDMTIKYSSKARLRQLPSLVNA 720
Query: 721 WERALKPIQLREALLARLEWFEGQASNPNRFFKKTNLSSSHFLEENQVRSHLHRKLNLME 780
WERALKPIQLREALLARLEWFEGQASNPNRFFKKTNLSSSHFLEENQVRSHLHRKLNLME
Sbjct: 721 WERALKPIQLREALLARLEWFEGQASNPNRFFKKTNLSSSHFLEENQVRSHLHRKLNLME 780
Query: 781 SSLVSLLEEIELIFGEPVIFKGRPYLDKMKSDKVEMLYWLQQQRRVRHLVSALKDPHQST 840
SSLVSLLEEIELIFGEPVIFKGRPYLDKMKSDKVEMLYWLQQQRRVRHLVSALKDPHQST
Sbjct: 781 SSLVSLLEEIELIFGEPVIFKGRPYLDKMKSDKVEMLYWLQQQRRVRHLVSALKDPHQST 840
Query: 841 LFRSSAASL 849
LFRSSAASL
Sbjct: 841 LFRSSAASL 849
>gi|14149696 SEC31 homolog B [Homo sapiens]
Length = 1179
Score = 38.1 bits (87), Expect = 0.035
Identities = 53/204 (25%), Positives = 76/204 (37%), Gaps = 41/204 (20%)
Query: 262 KPFHWLPSIGKKREIDI--SSSQMVSLPSYPV--------------APTSRA-SPSPFCP 304
+P H +P+ + + SS M PS+P AP +A P P P
Sbjct: 820 QPSHQVPTPSPRPRVFTPQSSPAMPLAPSHPSPYQGPRTQNISDYRAPGPQAIQPLPLSP 879
Query: 305 ELRRGQSMPSLREGWRLA--DELGLP---PLPSRPLT---PLVL--ATESKPELTGLIVA 354
+R S P L G R+ + +G P PLP PL P ++ + S PE L
Sbjct: 880 GVRPASSQPQLLGGQRVQVPNPVGFPGTWPLPGSPLPMACPGIMRPGSTSLPETPRLFPL 939
Query: 355 EDLKQLIKKMKLEGTRYPPL---------DSGLP-----PLLGVVTRHPAAGHRLEELEK 400
L+ L + T PP D G P P G++T HP +E
Sbjct: 940 LPLRPLGPGRMVSHTPAPPASFPVPYLPGDPGAPCSSVLPTTGILTPHPGPQDSWKEAPA 999
Query: 401 MLRNLQEEEASGQWDPQPPKSFPL 424
NLQ + + P P + P+
Sbjct: 1000 PRGNLQRNKLPETFMPPAPITAPV 1023
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 34.7 bits (78), Expect = 0.38
Identities = 49/167 (29%), Positives = 63/167 (37%), Gaps = 33/167 (19%)
Query: 281 SQMVSLP-SYPVAPTSRASPSPFCPELRRGQSMPSLREGWRLADELGLPPLPSRP-LTPL 338
S + SLP PVAP + SPSP E+ S P R PLP L P
Sbjct: 958 SPLPSLPLPPPVAPGGQESPSPHTAEVESEASPPPAR------------PLPGEARLAP- 1004
Query: 339 VLATESKPELTGLIVAEDLKQLIKKMKLEGTRYPPLDSGLPPLLGVVTRH---------- 388
++ E KP+L G K+ + + L+ T P L P +T
Sbjct: 1005 -ISEEGKPQLVGRFQVTSSKEPAEPLPLQPTS-PTLSGSPKPSTPQLTSESSDTEDSAGG 1062
Query: 389 -PAAGHRLEELEKMLRNL---QEEEASGQWDPQPPKS-FPL-HPQPV 429
P L E ++ L EEE +PQ S PL HP PV
Sbjct: 1063 GPETREALAESDRAAEGLGAGVEEEGDDGKEPQVGGSPQPLSHPSPV 1109
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 34.7 bits (78), Expect = 0.38
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 242 EPGRMDPVKELKSIPRLKRKKPFHWLPSIGKKREIDISSSQM-VSLPSYPVAPTSRASPS 300
EP P+K+ K P+ K +KP HW G+K +S M VS + + P +
Sbjct: 1139 EPDTSTPLKKKKGWPKGKSRKPIHWKKRPGRKPGFKLSREIMPVSTQACVIEPIVSIPKA 1198
Query: 301 PFCPELRRGQSMPSLREGWRLADE 324
P+++ + +E L +E
Sbjct: 1199 GRKPKIQESEETVEPKEDMPLPEE 1222
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 34.7 bits (78), Expect = 0.38
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 242 EPGRMDPVKELKSIPRLKRKKPFHWLPSIGKKREIDISSSQM-VSLPSYPVAPTSRASPS 300
EP P+K+ K P+ K +KP HW G+K +S M VS + + P +
Sbjct: 1139 EPDTSTPLKKKKGWPKGKSRKPIHWKKRPGRKPGFKLSREIMPVSTQACVIEPIVSIPKA 1198
Query: 301 PFCPELRRGQSMPSLREGWRLADE 324
P+++ + +E L +E
Sbjct: 1199 GRKPKIQESEETVEPKEDMPLPEE 1222
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 34.7 bits (78), Expect = 0.38
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 242 EPGRMDPVKELKSIPRLKRKKPFHWLPSIGKKREIDISSSQM-VSLPSYPVAPTSRASPS 300
EP P+K+ K P+ K +KP HW G+K +S M VS + + P +
Sbjct: 1139 EPDTSTPLKKKKGWPKGKSRKPIHWKKRPGRKPGFKLSREIMPVSTQACVIEPIVSIPKA 1198
Query: 301 PFCPELRRGQSMPSLREGWRLADE 324
P+++ + +E L +E
Sbjct: 1199 GRKPKIQESEETVEPKEDMPLPEE 1222
>gi|15559211 RE1-silencing transcription factor [Homo sapiens]
Length = 1097
Score = 33.5 bits (75), Expect = 0.85
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 13/120 (10%)
Query: 329 PLPSRPLTPLVLATESKPELTGLIVAEDLKQLIKKMKLEGTRYPPLDSGLPPLLGVVTRH 388
P P P V ES P +V ++ Q+ +E + P+ L P + VV +
Sbjct: 703 PAPMEPAQMEVAQVESAPMQ---VVQKEPVQMELSPPMEVVQKEPVQIELSPPMEVVQKE 759
Query: 389 PAAGHRLEELEKMLRNLQEEEAS----------GQWDPQPPKSFPLHPQPVTITLKLRNE 438
P +E + + + E S Q +P PP+ PLH +P++ LR +
Sbjct: 760 PVKIELSPPIEVVQKEPVQMELSPPMGVVQKEPAQREPPPPREPPLHMEPISKKPPLRKD 819
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 32.7 bits (73), Expect = 1.5
Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 24/131 (18%)
Query: 266 WLPSIGKKREIDISSSQMVSLPSYPVAPTSRASPSPF-CPELRRGQSMPSLREGWRLADE 324
W PS+ KKR ISS + S+ +P AP + + PF + + + + E L D
Sbjct: 1947 WSPSVAKKRLAIISSLKSKSVLIHPSAPDFKVAQVPFTTKKFQMSEVSDTSEETQILRDT 2006
Query: 325 LGL--------------------PPLPSRPLTPLVLATESKPELTGLIVAEDLKQLIKKM 364
+ P R L L+ T S LT L+ + L
Sbjct: 2007 FAIESFRTFQSHFTKYRTPVYQTPYTDERALLTLMKPTTSPSSLTTLLRTSQISPLEWYQ 2066
Query: 365 KLEGTRYPPLD 375
K +R+PP+D
Sbjct: 2067 K---SRFPPID 2074
>gi|44890059 involucrin [Homo sapiens]
Length = 585
Score = 32.7 bits (73), Expect = 1.5
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 23/158 (14%)
Query: 682 KHLEQLWSVLEVPDKDQVDMTIKYSSKARLRQL------PSLVNAWERALKPIQLREALL 735
KHLE LEVP++ + + +L+ L P L LK ++ +E
Sbjct: 264 KHLEHQEGQLEVPEEQMGQLKYLEQQEGQLKHLDQQEKQPELPEQQMGQLKHLEQQEGQP 323
Query: 736 ARLEWFEGQASNPNRFFKKTNLSSSHFLEENQVRSHLHR---KLNLMESSLVSLLEEIEL 792
LE EGQ ++ H ++ HL +L L E ++ L+++E
Sbjct: 324 KHLEQQEGQLEQ----LEEQEGQLKHLEQQEGQLEHLEHQEGQLGLPEQQVLQ-LKQLEK 378
Query: 793 IFGEPVIFKGRPYLDKMKSDKVEMLYWLQQQRRVRHLV 830
G+P ++ ++ ++ + +QQ+ +++HLV
Sbjct: 379 QQGQP---------KHLEEEEGQLKHLVQQEGQLKHLV 407
>gi|13569901 TSC22 domain family, member 4 [Homo sapiens]
Length = 395
Score = 32.7 bits (73), Expect = 1.5
Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 19/152 (12%)
Query: 279 SSSQMVSLPSYPVAPTSRASPSPFCPELRRGQSMPSLREGWRLADELG-LPPLPSRPLTP 337
+S LPS V + S + P RR LR +E+G +PPL SRP +P
Sbjct: 206 TSRAATPLPSLRVEAEAGGSGARTPPLSRRKAVDMRLRMELGAPEEMGQVPPLDSRPSSP 265
Query: 338 LVLAT------ESKPELTGLIVAEDLKQLIKKMKLEGTRYPPLDSGLPPLLGV------- 384
+ T P+ G + A+ + + G DSG L+G+
Sbjct: 266 ALYFTHDASLVHKSPDPFGAVAAQKFSLAHSMLAISGHLDSDDDSGSGSLVGIDNKIEQA 325
Query: 385 ---VTRHP--AAGHRLEELEKMLRNLQEEEAS 411
V H A +E L++ +R L E A+
Sbjct: 326 MDLVKSHLMFAVREEVEVLKEQIRELAERNAA 357
>gi|24497453 nucleoporin 88kDa [Homo sapiens]
Length = 741
Score = 32.3 bits (72), Expect = 1.9
Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 13/103 (12%)
Query: 610 HVIFQMHEE----EVPVEIVAPARESLEIQHPPPLLEDEEPDFVPGE---WDW--NTVLE 660
HV+F E + P E PA SL PP LL + GE WD ++ L
Sbjct: 21 HVVFLRLREGLKNQSPTEAEKPASSSLPSSPPPQLLTRNVVFGLGGELFLWDGEDSSFLV 80
Query: 661 HRL----GAGKTPHLGEPHKILSLQKHLEQLWSVLEVPDKDQV 699
RL G G+ P L + ++L + L +++ VL P + V
Sbjct: 81 VRLRGPSGGGEEPALSQYQRLLCINPPLFEIYQVLLSPTQHHV 123
>gi|221316661 oxoglutarate dehydrogenase-like isoform a [Homo
sapiens]
Length = 1010
Score = 32.0 bits (71), Expect = 2.5
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 399 EKMLRNLQEEEASGQWDPQPPKSFPLHPQPVTITLKLRNEVVVQAAAVRVSDRNFLDSFH 458
+ R EE SG P+PP +H ++ + + +V+ ++ ++ + ++
Sbjct: 71 DSFFREASEEAFSGSAQPRPPSV--VHESRSAVSSRTKTSKLVED---HLAVQSLIRAYQ 125
Query: 459 IEGAGALYNHLAGELDPKAIEKMDIDNFVGS 489
I G H +LDP I D+D+FV S
Sbjct: 126 IRG------HHVAQLDPLGILDADLDSFVPS 150
>gi|93277115 ataxin 7-like 2 [Homo sapiens]
Length = 722
Score = 32.0 bits (71), Expect = 2.5
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 9/82 (10%)
Query: 4 PPKPEPELQRFYHRLLRPLS--------LFPTRTTSPE-PQKRPPQEGRILQSFPLAKLT 54
PP EP L PLS P T P P PP + ++ S+P +
Sbjct: 456 PPAAEPPAHLVNSPLSAPLSPSSTGTCPRLPGPTLRPACPASMPPTKDNLVPSYPAGSPS 515
Query: 55 VASLCSQVAKLLAGSGIAAGVP 76
VA+ CSQ + I + +P
Sbjct: 516 VAAACSQAECMGGSQAITSPLP 537
>gi|23943928 hypothetical protein LOC140680 [Homo sapiens]
Length = 363
Score = 32.0 bits (71), Expect = 2.5
Identities = 36/149 (24%), Positives = 70/149 (46%), Gaps = 30/149 (20%)
Query: 703 IKYSSKARLRQLPSLVNAWERALKPIQLREALLARLEWFEGQASNPNRFFKKT----NLS 758
++YS+K RL+QL S + WE K ++ + E QA N +KT N
Sbjct: 161 LEYSNKKRLQQLKSELQEWEEKKK---------CKMSYLEQQAEQLNAKIEKTQEEVNFL 211
Query: 759 SSHFLEENQVR----SHLHRKLNLMESSLVSLLEEIELIFGEPVIFKGRPYLDKMKSDKV 814
S++ E ++ S L R+L ++ S L+++ GE R L+ + SDK+
Sbjct: 212 STYMDHEYSIKSVQISTLMRQLQQVKDSQQDELDDL----GE----MRRKVLESL-SDKI 262
Query: 815 EMLYWLQQQRRVRHLVSALKDPHQSTLFR 843
+ ++++ + +V+ + P++ L +
Sbjct: 263 QK----KKKKILSSVVAETQRPYEEALLQ 287
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 31.6 bits (70), Expect = 3.2
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 266 WLPSIGKKREIDISSSQMVSLPSYPVAPTSRASPSPFCPELRRGQSMPSLREGWRLADEL 325
W PS + +E +++ + + P + P + CP L QS P+ +EG L +
Sbjct: 437 WDPSPTQAKESPVAAGE--AGPDW--FPEGQEEDGGLCPPLN--QSSPTSKEGGTLPAPV 490
Query: 326 GLPPLPSRPLTPLVLATESKP 346
G P PS P P LA + P
Sbjct: 491 GSPEDPSDPPQPYRLADDYTP 511
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 31.6 bits (70), Expect = 3.2
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 266 WLPSIGKKREIDISSSQMVSLPSYPVAPTSRASPSPFCPELRRGQSMPSLREGWRLADEL 325
W PS + +E +++ + + P + P + CP L QS P+ +EG L +
Sbjct: 353 WDPSPTQAKESPVAAGE--AGPDW--FPEGQEEDGGLCPPLN--QSSPTSKEGGTLPAPV 406
Query: 326 GLPPLPSRPLTPLVLATESKP 346
G P PS P P LA + P
Sbjct: 407 GSPEDPSDPPQPYRLADDYTP 427
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 31.6 bits (70), Expect = 3.2
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 266 WLPSIGKKREIDISSSQMVSLPSYPVAPTSRASPSPFCPELRRGQSMPSLREGWRLADEL 325
W PS + +E +++ + + P + P + CP L QS P+ +EG L +
Sbjct: 353 WDPSPTQAKESPVAAGE--AGPDW--FPEGQEEDGGLCPPLN--QSSPTSKEGGTLPAPV 406
Query: 326 GLPPLPSRPLTPLVLATESKP 346
G P PS P P LA + P
Sbjct: 407 GSPEDPSDPPQPYRLADDYTP 427
>gi|126032348 hect domain and RLD 2 [Homo sapiens]
Length = 4834
Score = 31.2 bits (69), Expect = 4.2
Identities = 43/172 (25%), Positives = 67/172 (38%), Gaps = 37/172 (21%)
Query: 272 KKREIDISSSQMVSLPSYPVAPTSRASPSPFCPELRRGQSMPSLREGWRLADELGLPPLP 331
+KREI S + P AP+ AS PF P + D+LG +
Sbjct: 3468 EKREIVSSEDAVTPSAVTPSAPS--ASARPFIP----------------VTDDLGAASII 3509
Query: 332 SRPLTPLVLATESK-----------PELTGLIVAEDLKQLIKKMKLE-----GTRYPPLD 375
+ +T ES+ E T L++A+D + ++ +KL G R +
Sbjct: 3510 AETMTKTKEDVESQNKAAGPEPQALDEFTSLLIADDTRVVVDLLKLSVCSRAGDRGRDVL 3569
Query: 376 SGLPPLLGVVTRHPAAGHRLEEL-EKMLRNLQEEEASGQWDPQPPKSFPLHP 426
S + L G+ T +P L EL L ++ + SG+ QP HP
Sbjct: 3570 SAV--LSGMGTAYPQVADMLLELCVTELEDVATDSQSGRLSSQPVVVESSHP 3619
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 31.2 bits (69), Expect = 4.2
Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 13/124 (10%)
Query: 234 SRPPE-FLNEPGRMDPVKELKS-------IPRLKRKKPFHWLPSI--GKKREIDISSSQM 283
SR PE + E + DP K +PR + K P + G+ + I + +
Sbjct: 275 SRSPEPQIRESEQRDPQLRRKQQRWKEPLMPRREEKYPLRGTDPLPPGQPQRIPLPGQPL 334
Query: 284 VSLPSY-PVAPTSRASPSPFCPELRRGQSMPSLREGWRLADELGLPPLPSRPLTPLVLAT 342
P P P +P P L G S P G L + P P RPLTP + T
Sbjct: 335 QPQPILTPGQPQKIPTPGQHQPILTPGHSQPIPTPGQPLPPQP--IPTPGRPLTPQPIPT 392
Query: 343 ESKP 346
+P
Sbjct: 393 PGRP 396
>gi|169204669 PREDICTED: hypothetical protein LOC400027 [Homo
sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 290 PVAPTSRASPSPFC----------PELRRGQSMPSLREGWRLADEL 325
P+ T+ ASP+PFC P LR S+ + +GW L D +
Sbjct: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHI 106
>gi|89036097 PREDICTED: hypothetical protein LOC400027 isoform 4
[Homo sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 290 PVAPTSRASPSPFC----------PELRRGQSMPSLREGWRLADEL 325
P+ T+ ASP+PFC P LR S+ + +GW L D +
Sbjct: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHI 106
>gi|89035494 PREDICTED: hypothetical protein LOC400027 isoform 2
[Homo sapiens]
Length = 120
Score = 31.2 bits (69), Expect = 4.2
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 10/46 (21%)
Query: 290 PVAPTSRASPSPFC----------PELRRGQSMPSLREGWRLADEL 325
P+ T+ ASP+PFC P LR S+ + +GW L D +
Sbjct: 61 PIEETAAASPAPFCGRREICQHGKPLLRMHPSLETPLKGWSLGDHI 106
>gi|66529407 tensin [Homo sapiens]
Length = 1735
Score = 31.2 bits (69), Expect = 4.2
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 274 REIDISSSQMVSLPSYPVAP-------TSRASPSPFCPELRRGQSMPSLREGWRLA 322
R+ S Q S PS+PV+P + SPSP R+G P+L E R++
Sbjct: 1338 RQSSASGYQAPSTPSFPVSPAYYPGLSSPATSPSPDSAAFRQGSPTPALPEKRRMS 1393
>gi|33383235 minichromosome maintenance complex component 10 isoform
2 [Homo sapiens]
Length = 874
Score = 31.2 bits (69), Expect = 4.2
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 279 SSSQMVSLPSYPVAPTSRASPSPFCPELRRGQSMPSLREGWRLADELGLPPLPS-RPLTP 337
SSS+M S PS P+ SR PS + RGQ + + + + R P
Sbjct: 202 SSSRMTSAPSQPLQTISRNKPS----GITRGQIVGTPGSSGETTQPICVEAFSGLRLRRP 257
Query: 338 LVLATESKPELTG--LIVAEDLKQLIKKMKLE 367
V +TE ++TG LI +K+ + + KLE
Sbjct: 258 RVSSTEMNKKMTGRKLIRLSQIKEKMAREKLE 289
>gi|33383237 minichromosome maintenance complex component 10 isoform
1 [Homo sapiens]
Length = 875
Score = 31.2 bits (69), Expect = 4.2
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 279 SSSQMVSLPSYPVAPTSRASPSPFCPELRRGQSMPSLREGWRLADELGLPPLPS-RPLTP 337
SSS+M S PS P+ SR PS + RGQ + + + + R P
Sbjct: 203 SSSRMTSAPSQPLQTISRNKPS----GITRGQIVGTPGSSGETTQPICVEAFSGLRLRRP 258
Query: 338 LVLATESKPELTG--LIVAEDLKQLIKKMKLE 367
V +TE ++TG LI +K+ + + KLE
Sbjct: 259 RVSSTEMNKKMTGRKLIRLSQIKEKMAREKLE 290
>gi|208022641 elongin A [Homo sapiens]
Length = 798
Score = 31.2 bits (69), Expect = 4.2
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 634 IQHPPPLLEDEEPDFV---PGEWDWNTVLEHRLGAGKTPHLGEPH 675
+ H L ED+EP PG+ N + RLGA + HLGEPH
Sbjct: 217 VDHYRSLEEDQEPIVSHQKPGKGHSNA-FQDRLGASQERHLGEPH 260
>gi|13699836 matrilin 4 isoform 3 precursor [Homo sapiens]
Length = 499
Score = 31.2 bits (69), Expect = 4.2
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 23 SLFPTRTTSPEPQKRPPQEGRILQSFPLAKLTVASLCSQVAKLLAGSGIAAGVPPEARLR 82
S+FP R S +R E I PLA+ T+ L Q A +A S PPE R+
Sbjct: 84 SVFPLRAFS----RREDMERAIRDLVPLAQGTMTGLAIQYAMNVAFSVAEGARPPEERVP 139
Query: 83 LIKVILDE 90
+ VI+ +
Sbjct: 140 RVAVIVTD 147
>gi|13699834 matrilin 4 isoform 2 precursor [Homo sapiens]
Length = 540
Score = 31.2 bits (69), Expect = 4.2
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 23 SLFPTRTTSPEPQKRPPQEGRILQSFPLAKLTVASLCSQVAKLLAGSGIAAGVPPEARLR 82
S+FP R S +R E I PLA+ T+ L Q A +A S PPE R+
Sbjct: 84 SVFPLRAFS----RREDMERAIRDLVPLAQGTMTGLAIQYAMNVAFSVAEGARPPEERVP 139
Query: 83 LIKVILDE 90
+ VI+ +
Sbjct: 140 RVAVIVTD 147
>gi|13699830 matrilin 4 isoform 1 precursor [Homo sapiens]
Length = 581
Score = 31.2 bits (69), Expect = 4.2
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 23 SLFPTRTTSPEPQKRPPQEGRILQSFPLAKLTVASLCSQVAKLLAGSGIAAGVPPEARLR 82
S+FP R S +R E I PLA+ T+ L Q A +A S PPE R+
Sbjct: 84 SVFPLRAFS----RREDMERAIRDLVPLAQGTMTGLAIQYAMNVAFSVAEGARPPEERVP 139
Query: 83 LIKVILDE 90
+ VI+ +
Sbjct: 140 RVAVIVTD 147
>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
Length = 1113
Score = 30.8 bits (68), Expect = 5.5
Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 234 SRPPEFLNEPGRMDPVKELKSIPRLKRKKP-FH------WLPSIGKKREIDISSSQMVSL 286
+RP +EPG DP + P L KP H W P ++ ++ SL
Sbjct: 442 TRPGPNRHEPGGRDPPQHFGGPPPLISPKPQLHAAPTALWNPVSLMDNTLETRRAESHSL 501
Query: 287 PSYPVA-PTSRASPSP-------FCPELRRGQSMPSLREGWRLADELGLPPLPSR 333
S+P A SR + P FCPE + + P RE L D+ PP P R
Sbjct: 502 HSHPAAFEPSRQAAVPLVKVERVFCPE--KAEEGPRKREPAPL-DKYQPPPPPPR 553
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,622,390
Number of Sequences: 37866
Number of extensions: 1854064
Number of successful extensions: 5960
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 5922
Number of HSP's gapped (non-prelim): 82
length of query: 849
length of database: 18,247,518
effective HSP length: 111
effective length of query: 738
effective length of database: 14,044,392
effective search space: 10364761296
effective search space used: 10364761296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.