Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 157388906
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157388906 Lck interacting transmembrane adaptor 1 [Homo
sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157388906 Lck interacting transmembrane adaptor 1 [Homo sapiens] 600 e-172
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 36 0.046
gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens] 36 0.046
gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens] 36 0.046
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 35 0.10
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 34 0.13
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 34 0.13
gi|197276661 paired box 1 [Homo sapiens] 33 0.23
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.30
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.30
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.30
gi|158534059 formin binding protein 4 [Homo sapiens] 33 0.39
gi|153945765 mitogen-activated protein kinase kinase kinase 1 [H... 32 0.51
gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo sap... 32 0.51
gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo sap... 32 0.51
gi|169214343 PREDICTED: hypothetical protein [Homo sapiens] 32 0.51
gi|169213300 PREDICTED: hypothetical protein [Homo sapiens] 32 0.51
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 31 1.5
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 31 1.5
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 31 1.5
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 31 1.5
gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo ... 30 1.9
gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo ... 30 1.9
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 30 1.9
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 30 1.9
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 30 1.9
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 30 1.9
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 30 1.9
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 30 1.9
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 30 1.9
>gi|157388906 Lck interacting transmembrane adaptor 1 [Homo sapiens]
Length = 295
Score = 600 bits (1546), Expect = e-172
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MGLPVSWAPPALWVLGCCALLLSLWALCTACRRPEDAVAPRKRARRQRARLQGSATAAEA 60
MGLPVSWAPPALWVLGCCALLLSLWALCTACRRPEDAVAPRKRARRQRARLQGSATAAEA
Sbjct: 1 MGLPVSWAPPALWVLGCCALLLSLWALCTACRRPEDAVAPRKRARRQRARLQGSATAAEA 60
Query: 61 SLLRRTHLCSLSKSDTRLHELHRGPRSSRALRPASMDLLRPHWLEVSRDITGPQAAPSAF 120
SLLRRTHLCSLSKSDTRLHELHRGPRSSRALRPASMDLLRPHWLEVSRDITGPQAAPSAF
Sbjct: 61 SLLRRTHLCSLSKSDTRLHELHRGPRSSRALRPASMDLLRPHWLEVSRDITGPQAAPSAF 120
Query: 121 PHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGTHRSP 180
PHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGTHRSP
Sbjct: 121 PHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGTHRSP 180
Query: 181 QEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDLAYQTLPL 240
QEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDLAYQTLPL
Sbjct: 181 QEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAGDLAYQTLPL 240
Query: 241 RALDVDSGPLENVYESIRELGDPAGRSSTCGAGTPPASSCPSLGRGWRPLPASLP 295
RALDVDSGPLENVYESIRELGDPAGRSSTCGAGTPPASSCPSLGRGWRPLPASLP
Sbjct: 241 RALDVDSGPLENVYESIRELGDPAGRSSTCGAGTPPASSCPSLGRGWRPLPASLP 295
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 35.8 bits (81), Expect = 0.046
Identities = 65/239 (27%), Positives = 82/239 (34%), Gaps = 45/239 (18%)
Query: 11 ALWVLGCCALLLSLWALCTACRRPEDAVAPRKRAR----RQRA--RLQGSATAAEASL-- 62
AL VL C LLLSL C ACR + PR R R++A RL G + L
Sbjct: 448 ALLVLLVC-LLLSLLGCCCACRGKDPTRRPRPRRELSLGRKKAPHRLCGRFSRISMKLPR 506
Query: 63 --LRRTHLCSLSKSDTRLHELHRGPRSSRALRPASMDLLRPHW---LEVSRDITGPQAAP 117
LRR L K H+L S P+ ++ P W S T +
Sbjct: 507 IPLRRQ---KLPKVVVAHHDLDNTLNCSFLEPPSGLEQPSPSWSSRASFSSFDTTDEGPV 563
Query: 118 SAFPHQELPR--------ALPAAAATAGCAGLEATYSNVGLAALP-------GVSLAASP 162
PH+E P +PA A L S LP S P
Sbjct: 564 YCVPHEEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSVEGP 623
Query: 163 VVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPK 221
A YARV +R+ P + + E+ S P+RR P P PK
Sbjct: 624 GGALYARVARREA------RPARARGEIGG-------LSLSPSPERRKPPPPDPATKPK 669
>gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens]
Length = 922
Score = 35.8 bits (81), Expect = 0.046
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 9/141 (6%)
Query: 106 VSRDITGPQAAPSAF--PHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPV 163
++ I GP P + PH+ +P +P A A + Y+N GL L V +A P
Sbjct: 156 IAARILGPSKPPPSTYNPHKPVPYPIPPCRPHATIA--PSAYNNAGLVPLANV-IAPPPP 212
Query: 164 VAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPL----D 219
V +P +P Q +T TPA+Q+ + P PT P+
Sbjct: 213 PYTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNPSTPAATPVPTASPVKAINH 272
Query: 220 PKGQGAILALAGDLAYQTLPL 240
P A +L LP+
Sbjct: 273 PSASAAATVSGMNLLNTVLPV 293
>gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens]
Length = 944
Score = 35.8 bits (81), Expect = 0.046
Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 9/141 (6%)
Query: 106 VSRDITGPQAAPSAF--PHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPV 163
++ I GP P + PH+ +P +P A A + Y+N GL L V +A P
Sbjct: 178 IAARILGPSKPPPSTYNPHKPVPYPIPPCRPHATIA--PSAYNNAGLVPLANV-IAPPPP 234
Query: 164 VAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPL----D 219
V +P +P Q +T TPA+Q+ + P PT P+
Sbjct: 235 PYTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNPSTPAATPVPTASPVKAINH 294
Query: 220 PKGQGAILALAGDLAYQTLPL 240
P A +L LP+
Sbjct: 295 PSASAAATVSGMNLLNTVLPV 315
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 34.7 bits (78), Expect = 0.10
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 26/150 (17%)
Query: 32 RRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSRAL 91
R P A R R R R T ASL+RR SL++S +R R+S ++
Sbjct: 87 RTPSMASLKRMPPRASRTR-----TLPRASLMRRPSTASLTRSPSRASLTTTPSRASLSM 141
Query: 92 RPASMDLL-------------------RPHWLEVSRDITGPQAAPSAFPHQELPRALPAA 132
P++ L P ++R T P+A+P+ P + P +P+
Sbjct: 142 TPSTAAALTMPSRASLTRTPPRASLTMTPSTASLTR--TPPRASPTGMPSRTSPTGMPST 199
Query: 133 AATAGCAGLEATYSNVGLAALPGVSLAASP 162
A+ + + A+ G ASP
Sbjct: 200 ASLTKMDSTASITRTLSRASPTGTPPRASP 229
Score = 32.7 bits (73), Expect = 0.39
Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 5/117 (4%)
Query: 111 TGPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPV-----VA 165
T P+A+ + P + P P+ A+ G + + A+L G+S ASP +
Sbjct: 334 TPPRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRAS 393
Query: 166 EYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKG 222
T + P+ G T ++D S P R P T P G
Sbjct: 394 PTGTPSTASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTG 450
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 34.3 bits (77), Expect = 0.13
Identities = 61/234 (26%), Positives = 78/234 (33%), Gaps = 40/234 (17%)
Query: 11 ALWVLGCCALLLSLWALCTACR-----RPEDAVAPRKRARRQRARLQGSATAAEASLLRR 65
AL VL C LLLSL C ACR R E ++ +K R R + LRR
Sbjct: 448 ALLVLLVC-LLLSLLGCCCACRGKDPTRRELSLGRKKAPHRLCGRFSRISMKLPRIPLRR 506
Query: 66 THLCSLSKSDTRLHELHRGPRSSRALRPASMDLLRPHW---LEVSRDITGPQAAPSAFPH 122
L K H+L S P+ ++ P W S T + PH
Sbjct: 507 Q---KLPKVVVAHHDLDNTLNCSFLEPPSGLEQPSPSWSSRASFSSFDTTDEGPVYCVPH 563
Query: 123 QELPR--------ALPAAAATAGCAGLEATYSNVGLAALP-------GVSLAASPVVAEY 167
+E P +PA A L S LP S P A Y
Sbjct: 564 EEAPAESRDPEVPTVPAEAPAPSPVPLTTPASAEEAIPLPASSDSERSASSVEGPGGALY 623
Query: 168 ARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPK 221
ARV +R+ P + + E+ S P+RR P P PK
Sbjct: 624 ARVARREA------RPARARGEIGG-------LSLSPSPERRKPPPPDPATKPK 664
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 34.3 bits (77), Expect = 0.13
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 17/196 (8%)
Query: 111 TGPQAAPSAFPHQE----LPRALPAAAATAGCAGLEATYSNVGLAALPGVSL--AASPVV 164
+G ++ ++FP Q+ L R AAAA A A A + AA P +L AA+P +
Sbjct: 471 SGKISSGNSFPPQQAGSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPAL 530
Query: 165 AEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKP-----KRRDPGPTTDPLD 219
A A +P PAA S KP + P P
Sbjct: 531 AAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAAPSHSQKPSVPLIQASRPCPAA---Q 587
Query: 220 PKGQGAILALAGDLAYQTLPLRALDVDSGPLENVYESIRELGDPAGRSSTCGAGTPPASS 279
P + +A A L + L+A++V+ GP++ +++ P ++ GA P S
Sbjct: 588 PPTKFIKIAPAIQLRTGSTGLKAINVE-GPVQGA-QALGSSFKPV-QAPGSGAPAPAGIS 644
Query: 280 CPSLGRGWRPLPASLP 295
L PLP + P
Sbjct: 645 GSDLQSSGGPLPDARP 660
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 33.5 bits (75), Expect = 0.23
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 28 CTACRRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRS 87
C + RP +PR RARR+R G+ A A + + L++ E GPR
Sbjct: 447 CPSRPRPPRGSSPRTRARRERQADPGAQVCAAAPAIGTGRIGGLAE-----EEASAGPRG 501
Query: 88 SRALRPASMDLLRP 101
+R P + L P
Sbjct: 502 ARPASPQAQPCLWP 515
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 33.1 bits (74), Expect = 0.30
Identities = 57/235 (24%), Positives = 81/235 (34%), Gaps = 79/235 (33%)
Query: 43 RARRQRARLQGSA-----------------------------TAAEASLLRRTHLCSLS- 72
RA+ ++A+LQG+A + L R HL L
Sbjct: 2335 RAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVSCRGHLFSRQHLAKLKE 2394
Query: 73 ------KSDTRLHELHRGPRSSRALR------PASMDLLRPHWLEVSRDITGPQAAPSAF 120
KS+++ ++L P + AL+ PASM L AAP+
Sbjct: 2395 AVRAQLKSESKCYDLAPAPEAPPALKAPPATTPASMPL---------------GAAPT-- 2437
Query: 121 PHQELPRALPAAAATAGCA----GLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGT 176
LPR P + A G A + N G AA G+ A+ V+ VQ
Sbjct: 2438 ----LPRLAPVLLSGPALAQPPLGNLAPF-NSGPAASSGLLGLATSVLPTTTVVQTAGPG 2492
Query: 177 HRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAG 231
PQ P +T + A D + PGP T+PL K +AG
Sbjct: 2493 RPLPQRPMPDQTNTSTAGTTDPV-----------PGPPTEPLGDKVSSERKPVAG 2536
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 33.1 bits (74), Expect = 0.30
Identities = 57/235 (24%), Positives = 81/235 (34%), Gaps = 79/235 (33%)
Query: 43 RARRQRARLQGSA-----------------------------TAAEASLLRRTHLCSLS- 72
RA+ ++A+LQG+A + L R HL L
Sbjct: 2251 RAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVSCRGHLFSRQHLAKLKE 2310
Query: 73 ------KSDTRLHELHRGPRSSRALR------PASMDLLRPHWLEVSRDITGPQAAPSAF 120
KS+++ ++L P + AL+ PASM L AAP+
Sbjct: 2311 AVRAQLKSESKCYDLAPAPEAPPALKAPPATTPASMPL---------------GAAPT-- 2353
Query: 121 PHQELPRALPAAAATAGCA----GLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGT 176
LPR P + A G A + N G AA G+ A+ V+ VQ
Sbjct: 2354 ----LPRLAPVLLSGPALAQPPLGNLAPF-NSGPAASSGLLGLATSVLPTTTVVQTAGPG 2408
Query: 177 HRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAG 231
PQ P +T + A D + PGP T+PL K +AG
Sbjct: 2409 RPLPQRPMPDQTNTSTAGTTDPV-----------PGPPTEPLGDKVSSERKPVAG 2452
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 33.1 bits (74), Expect = 0.30
Identities = 57/235 (24%), Positives = 81/235 (34%), Gaps = 79/235 (33%)
Query: 43 RARRQRARLQGSA-----------------------------TAAEASLLRRTHLCSLS- 72
RA+ ++A+LQG+A + L R HL L
Sbjct: 2251 RAKEKKAKLQGTAAGSTGGSSEGLLAAQRTDCPYCDVKYDFYVSCRGHLFSRQHLAKLKE 2310
Query: 73 ------KSDTRLHELHRGPRSSRALR------PASMDLLRPHWLEVSRDITGPQAAPSAF 120
KS+++ ++L P + AL+ PASM L AAP+
Sbjct: 2311 AVRAQLKSESKCYDLAPAPEAPPALKAPPATTPASMPL---------------GAAPT-- 2353
Query: 121 PHQELPRALPAAAATAGCA----GLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGT 176
LPR P + A G A + N G AA G+ A+ V+ VQ
Sbjct: 2354 ----LPRLAPVLLSGPALAQPPLGNLAPF-NSGPAASSGLLGLATSVLPTTTVVQTAGPG 2408
Query: 177 HRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPKGQGAILALAG 231
PQ P +T + A D + PGP T+PL K +AG
Sbjct: 2409 RPLPQRPMPDQTNTSTAGTTDPV-----------PGPPTEPLGDKVSSERKPVAG 2452
>gi|158534059 formin binding protein 4 [Homo sapiens]
Length = 1017
Score = 32.7 bits (73), Expect = 0.39
Identities = 31/116 (26%), Positives = 43/116 (37%), Gaps = 20/116 (17%)
Query: 111 TGPQAA-----PSAFPHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPVVA 165
TG QAA + HQ +P +LPAA G+ + +G LAA+P +
Sbjct: 821 TGHQAAGIGNQATGIGHQTIPVSLPAAGMGHQARGMSLQSNYLG--------LAAAPAIM 872
Query: 166 EYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDPK 221
YA G +P Q + V A ++ P P P P PK
Sbjct: 873 SYAECSVPIGVTAPSLQPVQARGAVPTATIIE-------PPPPPPPPPPPPPPAPK 921
>gi|153945765 mitogen-activated protein kinase kinase kinase 1 [Homo
sapiens]
Length = 1512
Score = 32.3 bits (72), Expect = 0.51
Identities = 46/189 (24%), Positives = 62/189 (32%), Gaps = 17/189 (8%)
Query: 54 SATAAEASLLRRTHLCSLSKSDTR-----------LHELHRGPRSSRALRPASMDLLRPH 102
SA AA A LLR ++D R L +L P A PAS P
Sbjct: 35 SAPAAAAGLLREAGSGGRERADWRRRQLRKVRSVELDQLPEQPLFLAASPPASSTSPSPE 94
Query: 103 WLEVSRDITGPQAAPSAFPHQELPRA-----LPAAAATAGCAGLEATYSNVGLAALPGVS 157
+ + TG Q PH R AA +G + A A S
Sbjct: 95 PADAAGSGTGFQPVAVPPPHGAASRGGAHLTESVAAPDSGASSPAAAEPGEKRAPAAEPS 154
Query: 158 LAASPVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGP-TTD 216
AA+P E + KG H+ P++ A + +R GP
Sbjct: 155 PAAAPAGREMENKETLKGLHKMDDRPEERMIREKLKATCMPAWKHEWLERRNRRGPVVVK 214
Query: 217 PLDPKGQGA 225
P+ KG G+
Sbjct: 215 PIPVKGDGS 223
>gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
Length = 198
Score = 32.3 bits (72), Expect = 0.51
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 32 RRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSR-A 90
R P ++ R R+ + AR A E ++ RT CS RGPR SR A
Sbjct: 49 RLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCST-----------RGPRRSRMA 97
Query: 91 LRPASMDLLRPHWLEVSR 108
LRP S P W R
Sbjct: 98 LRPRSAPSRAPAWYTARR 115
>gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 198
Score = 32.3 bits (72), Expect = 0.51
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 32 RRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSR-A 90
R P ++ R R+ + AR A E ++ RT CS RGPR SR A
Sbjct: 49 RLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCST-----------RGPRRSRMA 97
Query: 91 LRPASMDLLRPHWLEVSR 108
LRP S P W R
Sbjct: 98 LRPRSAPSRAPAWYTARR 115
>gi|169214343 PREDICTED: hypothetical protein [Homo sapiens]
Length = 198
Score = 32.3 bits (72), Expect = 0.51
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 32 RRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSR-A 90
R P ++ R R+ + AR A E ++ RT CS RGPR SR A
Sbjct: 49 RLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCST-----------RGPRRSRMA 97
Query: 91 LRPASMDLLRPHWLEVSR 108
LRP S P W R
Sbjct: 98 LRPRSAPSRAPAWYTARR 115
>gi|169213300 PREDICTED: hypothetical protein [Homo sapiens]
Length = 198
Score = 32.3 bits (72), Expect = 0.51
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 32 RRPEDAVAPRKRARRQRARLQGSATAAEASLLRRTHLCSLSKSDTRLHELHRGPRSSR-A 90
R P ++ R R+ + AR A E ++ RT CS RGPR SR A
Sbjct: 49 RLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRPCST-----------RGPRRSRMA 97
Query: 91 LRPASMDLLRPHWLEVSR 108
LRP S P W R
Sbjct: 98 LRPRSAPSRAPAWYTARR 115
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 30.8 bits (68), Expect = 1.5
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
Query: 121 PHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPVVAEYARVQKRKGTHRSP 180
PH +LP GC G E + S A+LPG SP + Q+R+ TH +
Sbjct: 24 PHPQLPEH--------GCKGQEHSDSEKASASLPG----GSPEDGSLKKKQRRQRTHFTS 71
Query: 181 QEPQQ 185
Q+ Q+
Sbjct: 72 QQLQE 76
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 30.8 bits (68), Expect = 1.5
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 121 PHQELPRALPAAAATAGCAGLE--------ATYSNVGLAAL--PGVSLAASPVVAEYARV 170
P + L AAAA A C GL + S++ L P A SP RV
Sbjct: 231 PARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRRCRV 290
Query: 171 QKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDP 220
+ + + Q+ + + L +R + DPGP PL P
Sbjct: 291 NWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTP 340
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 30.8 bits (68), Expect = 1.5
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 121 PHQELPRALPAAAATAGCAGLE--------ATYSNVGLAAL--PGVSLAASPVVAEYARV 170
P + L AAAA A C GL + S++ L P A SP RV
Sbjct: 231 PARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRRCRV 290
Query: 171 QKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDP 220
+ + + Q+ + + L +R + DPGP PL P
Sbjct: 291 NWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTP 340
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 30.8 bits (68), Expect = 1.5
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 121 PHQELPRALPAAAATAGCAGLE--------ATYSNVGLAAL--PGVSLAASPVVAEYARV 170
P + L AAAA A C GL + S++ L P A SP RV
Sbjct: 231 PARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRRCRV 290
Query: 171 QKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGPTTDPLDP 220
+ + + Q+ + + L +R + DPGP PL P
Sbjct: 291 NWNQSSRPASHNAQRAARHIPSRPRASGLRARAARRPGLDPGPAPYPLTP 340
>gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo
sapiens]
Length = 507
Score = 30.4 bits (67), Expect = 1.9
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 109 DITGPQAA--PSAFPHQELPRALPAAAATAGCAGLEATYSNV-GLAALPGV 156
++TGP A P+ P+ LP AAA AG G ++N+ G+AA P V
Sbjct: 257 NVTGPVANSNPTGSPYANTAEVLPTAAAAAGLLG----HANLAGVAAFPAV 303
>gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo
sapiens]
Length = 483
Score = 30.4 bits (67), Expect = 1.9
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 109 DITGPQAA--PSAFPHQELPRALPAAAATAGCAGLEATYSNV-GLAALPGV 156
++TGP A P+ P+ LP AAA AG G ++N+ G+AA P V
Sbjct: 233 NVTGPVANSNPTGSPYANTAEVLPTAAAAAGLLG----HANLAGVAAFPAV 279
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 30.4 bits (67), Expect = 1.9
Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 23/172 (13%)
Query: 112 GPQAAPSAFPHQELPRALPAAAATAGCAGLEATYSNVGLAALPGVSLAASPVVAEYARVQ 171
GP+ + S+ PAA G + A +S +A+P+ +
Sbjct: 195 GPRKSVSSASEHSTTEPSPAARRRPSAGG------GLQRPASRSLSSSATPLSSPARSGP 248
Query: 172 KRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPGP-----TTDPLDPKGQGAI 226
+GT R+P P Q K + + L P R+D P ++ PL A
Sbjct: 249 SARGTPRAPAHPSQPKPK-----GLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAP 303
Query: 227 LALAGDLAYQTLPLRALDVDSGPLENVYESIRELGDPAGRSSTCGAGTPPAS 278
+ + + QTLP S P ++ LG P +++ +PP S
Sbjct: 304 PSPSAPPSLQTLP-------SPPATPPSQATTSLGSPTLQATHSFLPSPPLS 348
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 162 PVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPG 212
P+ Y R K TH EP + ++ V P+ + Y+++ + RRD G
Sbjct: 3819 PLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLRRCRRDDG 3869
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 162 PVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPG 212
P+ Y R K TH EP + ++ V P+ + Y+++ + RRD G
Sbjct: 3823 PLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLRRCRRDDG 3873
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 162 PVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPG 212
P+ Y R K TH EP + ++ V P+ + Y+++ + RRD G
Sbjct: 3819 PLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLRRCRRDDG 3869
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 162 PVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPG 212
P+ Y R K TH EP + ++ V P+ + Y+++ + RRD G
Sbjct: 3787 PLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLRRCRRDDG 3837
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 162 PVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPG 212
P+ Y R K TH EP + ++ V P+ + Y+++ + RRD G
Sbjct: 3956 PLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLRRCRRDDG 4006
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 30.4 bits (67), Expect = 1.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 162 PVVAEYARVQKRKGTHRSPQEPQQGKTEVTPAAQVDVLYSRVCKPKRRDPG 212
P+ Y R K TH EP + ++ V P+ + Y+++ + RRD G
Sbjct: 3797 PLEVAYQRGYLNKDTHDQLSEPSEVRSYVDPSTDERLSYTQLLRRCRRDDG 3847
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,826,148
Number of Sequences: 37866
Number of extensions: 706062
Number of successful extensions: 2892
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 2815
Number of HSP's gapped (non-prelim): 156
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.