LIME1 6157

Name: LIME1	Sequence: fasta or formatted (295aa)		NCBI GI: 157388906
Description: Lck interacting transmembrane adaptor 1		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 14.6 43 4 C cysteine 3.1 9 2 D aspartate 4.1 12 1 E glutamate 4.1 12 1 F phenylalanine 0.3 1 1 G glycine 7.5 22 1 H histidine 2.0 6 1 I isoleucine 1.0 3 1 K lysine 2.7 8 1 L leucine 12.9 38 3 M methionine 0.7 2 1 N asparagine 0.7 2 1 P proline 10.8 32 2 Q glutamine 3.7 11 2 R arginine 9.8 29 2 S serine 8.5 25 2 T threonine 5.1 15 2 V valine 5.1 15 2 W tryptophan 1.7 5 1 Y tyrosine 1.7 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Lck interacting transmembrane adaptor 1 SCARF2 0.019 scavenger receptor class F, member 2 isoform 1 [Homo... C13orf23 0.019 hypothetical protein LOC80209 isoform 2 C13orf23 0.019 hypothetical protein LOC80209 isoform 1 LOC100133756 0.017 PREDICTED: hypothetical protein, partial SCARF2 0.016 scavenger receptor class F, member 2 isoform 2 [Homo... FAM48B1 0.016 hypothetical protein LOC100130302 PAX1 0.014 paired box 1 ZFHX2 0.014 PREDICTED: zinc finger homeobox 2 ZFHX2 0.014 PREDICTED: zinc finger homeobox 2 ZFHX2 0.014 PREDICTED: zinc finger homeobox 2 FNBP4 0.014 formin binding protein 4 MAP3K1 0.012 mitogen-activated protein kinase kinase kinase 1 [H... LOC100129500 0.012 PREDICTED: hypothetical protein isoform 1 LOC100129500 0.012 PREDICTED: hypothetical protein isoform 2 LOC100129500 0.012 PREDICTED: hypothetical protein LOC100129500 0.012 PREDICTED: hypothetical protein PITX3 0.010 paired-like homeodomain 3 LOC100291624 0.010 PREDICTED: hypothetical protein XP_002345876 LOC100289712 0.010 PREDICTED: hypothetical protein XP_002346761 LOC100287455 0.010 PREDICTED: hypothetical protein XP_002342583 NOVA1 0.009 neuro-oncological ventral antigen 1 isoform 1 NOVA1 0.009 neuro-oncological ventral antigen 1 isoform 2 FLJ22184 0.009 PREDICTED: hypothetical protein LOC80164 PLEC1 0.009 plectin 1 isoform 11 PLEC1 0.009 plectin 1 isoform 10 PLEC1 0.009 plectin 1 isoform 8 PLEC1 0.009 plectin 1 isoform 7 PLEC1 0.009 plectin 1 isoform 6 PLEC1 0.009 plectin 1 isoform 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.