Guide to the Human Genome
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Name: GRIA1 Sequence: fasta or formatted (906aa) NCBI GI: 167001419
Description:

glutamate receptor, ionotropic, AMPA 1 isoform 1

Referenced in:

Glutamate

Other entries for this name:
alt prot [906aa] glutamate receptor, ionotropic, AMPA 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         62           2
 C cysteine            1.5         14           1
 D aspartate           4.9         44           2
 E glutamate           6.0         54           2
 F phenylalanine       5.5         50           2
 G glycine             8.3         75           3
 H histidine           1.3         12           1
 I isoleucine          6.5         59           3
 K lysine              6.1         55           3
 L leucine             8.1         73           2
 M methionine          2.8         25           1
 N asparagine          4.5         41           2
 P proline             3.5         32           2
 Q glutamine           4.4         40           2
 R arginine            5.0         45           2
 S serine              7.6         69           2
 T threonine           5.1         46           3
 V valine              6.6         60           3
 W tryptophan          1.7         15           2
 Y tyrosine            3.9         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutamate receptor, ionotropic, AMPA 1 isoform 1 [H... 
GRIA1                 0.990   glutamate receptor, ionotropic, AMPA 1 isoform 2 [H...
GRIA2                 0.685   glutamate receptor, ionotropic, AMPA 2 isoform 2 pr...
GRIA2                 0.676   glutamate receptor, ionotropic, AMPA 2 isoform 1 pre...
GRIA4                 0.666   glutamate receptor, ionotrophic, AMPA 4 isoform 1 p...
GRIA4                 0.664   glutamate receptor, ionotrophic, AMPA 4 isoform 2 p...
GRIA2                 0.661   glutamate receptor, ionotropic, AMPA 2 isoform 3 [H...
GRIA3                 0.655   glutamate receptor, ionotrophic, AMPA 3 isoform 2 p...
GRIA3                 0.647   glutamate receptor, ionotrophic, AMPA 3 isoform 1 p...
GRIK2                 0.331   glutamate receptor, ionotropic, kainate 2 isoform 1 ...
GRIK2                 0.331   glutamate receptor, ionotropic, kainate 2 isoform 2 ...
GRIK1                 0.326   glutamate receptor, ionotropic, kainate 1 isoform 2 ...
GRIK1                 0.325   glutamate receptor, ionotropic, kainate 1 isoform 1 p...
GRIK3                 0.322   glutamate receptor, ionotropic, kainate 3 precursor ...
GRIK5                 0.275   glutamate receptor KA2 precursor 
GRIK4                 0.275   glutamate receptor KA1 precursor 
GRIA4                 0.238   glutamate receptor, ionotrophic, AMPA 4 isoform 3 p...
GRIA4                 0.238   glutamate receptor, ionotrophic, AMPA 4 isoform 3 p...
GRID2                 0.184   glutamate receptor, ionotropic, delta 2 
GRID1                 0.175   glutamate receptor, ionotropic, delta 1 precursor [H...
GRIN1                 0.122   NMDA receptor 1 isoform NR1-1 precursor 
GRIN1                 0.122   NMDA receptor 1 isoform NR1-3 precursor 
GRIN1                 0.122   NMDA receptor 1 isoform NR1-2 precursor 
GRIN2C                0.094   N-methyl-D-aspartate receptor subunit 2C precursor [...
GRIN2B                0.090   N-methyl-D-aspartate receptor subunit 2B precursor ...
GRIN2D                0.085   N-methyl-D-aspartate receptor subunit 2D precursor ...
GRIN2A                0.084   N-methyl-D-aspartate receptor subunit 2A isoform 2 ...
GRIN2A                0.084   N-methyl-D-aspartate receptor subunit 2A isoform 1 ...
GRIN2A                0.084   N-methyl-D-aspartate receptor subunit 2A isoform 1 pr...
GRIN3B                0.074   glutamate receptor, ionotropic, N-methyl-D-aspartate...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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