Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GRIA2 Sequence: fasta or formatted (883aa) NCBI GI: 134304848
Description:

glutamate receptor, ionotropic, AMPA 2 isoform 2 precursor

Referenced in:

Glutamate
RNA Editing and Other RNA Modifications

Other entries for this name:
alt prot [836aa] glutamate receptor, ionotropic, AMPA 2 isoform 3
alt prot [883aa] glutamate receptor, ionotropic, AMPA 2 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         55           2
 C cysteine            1.2         11           1
 D aspartate           4.9         43           2
 E glutamate           6.3         56           2
 F phenylalanine       5.1         45           2
 G glycine             8.2         72           3
 H histidine           1.1         10           1
 I isoleucine          6.9         61           3
 K lysine              7.1         63           2
 L leucine             8.0         71           2
 M methionine          2.6         23           2
 N asparagine          4.6         41           2
 P proline             2.8         25           1
 Q glutamine           3.2         28           1
 R arginine            4.3         38           2
 S serine              8.3         73           3
 T threonine           5.5         49           3
 V valine              7.5         66           3
 W tryptophan          1.7         15           2
 Y tyrosine            4.3         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glutamate receptor, ionotropic, AMPA 2 isoform 2 pr... 
GRIA2                 0.989   glutamate receptor, ionotropic, AMPA 2 isoform 1 pre...
GRIA2                 0.936   glutamate receptor, ionotropic, AMPA 2 isoform 3 [H...
GRIA4                 0.772   glutamate receptor, ionotrophic, AMPA 4 isoform 2 p...
GRIA3                 0.737   glutamate receptor, ionotrophic, AMPA 3 isoform 2 p...
GRIA4                 0.726   glutamate receptor, ionotrophic, AMPA 4 isoform 1 p...
GRIA3                 0.726   glutamate receptor, ionotrophic, AMPA 3 isoform 1 p...
GRIA1                 0.708   glutamate receptor, ionotropic, AMPA 1 isoform 1 [H...
GRIA1                 0.698   glutamate receptor, ionotropic, AMPA 1 isoform 2 [H...
GRIK2                 0.338   glutamate receptor, ionotropic, kainate 2 isoform 1 ...
GRIK2                 0.338   glutamate receptor, ionotropic, kainate 2 isoform 2 ...
GRIK3                 0.327   glutamate receptor, ionotropic, kainate 3 precursor ...
GRIK1                 0.325   glutamate receptor, ionotropic, kainate 1 isoform 2 ...
GRIK1                 0.320   glutamate receptor, ionotropic, kainate 1 isoform 1 p...
GRIA4                 0.281   glutamate receptor, ionotrophic, AMPA 4 isoform 3 p...
GRIA4                 0.281   glutamate receptor, ionotrophic, AMPA 4 isoform 3 p...
GRIK4                 0.278   glutamate receptor KA1 precursor 
GRIK5                 0.277   glutamate receptor KA2 precursor 
GRID1                 0.186   glutamate receptor, ionotropic, delta 1 precursor [H...
GRID2                 0.185   glutamate receptor, ionotropic, delta 2 
GRIN1                 0.121   NMDA receptor 1 isoform NR1-1 precursor 
GRIN1                 0.121   NMDA receptor 1 isoform NR1-3 precursor 
GRIN1                 0.121   NMDA receptor 1 isoform NR1-2 precursor 
GRIN2B                0.092   N-methyl-D-aspartate receptor subunit 2B precursor ...
GRIN2C                0.090   N-methyl-D-aspartate receptor subunit 2C precursor [...
GRIN2D                0.084   N-methyl-D-aspartate receptor subunit 2D precursor ...
GRIN2A                0.084   N-methyl-D-aspartate receptor subunit 2A isoform 2 ...
GRIN2A                0.084   N-methyl-D-aspartate receptor subunit 2A isoform 1 ...
GRIN2A                0.084   N-methyl-D-aspartate receptor subunit 2A isoform 1 pr...
GRIN3B                0.079   glutamate receptor, ionotropic, N-methyl-D-aspartate...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press