Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GRIN2A Sequence: fasta or formatted (1464aa) NCBI GI: 4504125
Description:

N-methyl-D-aspartate receptor subunit 2A isoform 1 precursor

Referenced in:

Glutamate

Other entries for this name:
alt mRNA [1464aa] N-methyl-D-aspartate receptor subunit 2A isoform 1 precursor
alt prot [1281aa] N-methyl-D-aspartate receptor subunit 2A isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         74           3
 C cysteine            1.6         23           2
 D aspartate           6.0         88           2
 E glutamate           5.4         79           2
 F phenylalanine       4.7         69           2
 G glycine             5.6         82           2
 H histidine           2.7         40           1
 I isoleucine          4.6         67           1
 K lysine              5.9         87           3
 L leucine             8.5        124           2
 M methionine          3.2         47           2
 N asparagine          5.7         84           2
 P proline             5.1         75           2
 Q glutamine           3.5         51           3
 R arginine            5.0         73           2
 S serine             10.0        147           3
 T threonine           5.3         77           2
 V valine              7.2        105           2
 W tryptophan          1.5         22           1
 Y tyrosine            3.4         50           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   N-methyl-D-aspartate receptor subunit 2A isoform 1 pr... 
GRIN2A                1.000   N-methyl-D-aspartate receptor subunit 2A isoform 1 ...
GRIN2A                0.859   N-methyl-D-aspartate receptor subunit 2A isoform 2 ...
GRIN2B                0.487   N-methyl-D-aspartate receptor subunit 2B precursor ...
GRIN2C                0.337   N-methyl-D-aspartate receptor subunit 2C precursor [...
GRIN2D                0.322   N-methyl-D-aspartate receptor subunit 2D precursor ...
GRIN3A                0.093   glutamate receptor, ionotropic, N-methyl-D-aspartat...
GRIN1                 0.092   NMDA receptor 1 isoform NR1-1 precursor 
GRIN1                 0.092   NMDA receptor 1 isoform NR1-3 precursor 
GRIN1                 0.092   NMDA receptor 1 isoform NR1-2 precursor 
GRIN3B                0.076   glutamate receptor, ionotropic, N-methyl-D-aspartate...
GRIK2                 0.055   glutamate receptor, ionotropic, kainate 2 isoform 1 ...
GRIK2                 0.055   glutamate receptor, ionotropic, kainate 2 isoform 2 ...
GRIK1                 0.055   glutamate receptor, ionotropic, kainate 1 isoform 2 ...
GRIK1                 0.054   glutamate receptor, ionotropic, kainate 1 isoform 1 p...
GRIK3                 0.054   glutamate receptor, ionotropic, kainate 3 precursor ...
GRIK5                 0.052   glutamate receptor KA2 precursor 
GRIA1                 0.051   glutamate receptor, ionotropic, AMPA 1 isoform 2 [H...
GRIA3                 0.051   glutamate receptor, ionotrophic, AMPA 3 isoform 1 p...
GRIK4                 0.051   glutamate receptor KA1 precursor 
GRIA3                 0.051   glutamate receptor, ionotrophic, AMPA 3 isoform 2 p...
GRIA1                 0.051   glutamate receptor, ionotropic, AMPA 1 isoform 1 [H...
GRID2                 0.050   glutamate receptor, ionotropic, delta 2 
GRIA4                 0.050   glutamate receptor, ionotrophic, AMPA 4 isoform 1 p...
GRIA2                 0.050   glutamate receptor, ionotropic, AMPA 2 isoform 3 [H...
GRIA2                 0.050   glutamate receptor, ionotropic, AMPA 2 isoform 1 pre...
GRIA4                 0.050   glutamate receptor, ionotrophic, AMPA 4 isoform 2 p...
GRIA2                 0.049   glutamate receptor, ionotropic, AMPA 2 isoform 2 pr...
GRID1                 0.046   glutamate receptor, ionotropic, delta 1 precursor [H...
WNK3                  0.004   WNK lysine deficient protein kinase 3 isoform 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press