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Search of human proteins with 156564238
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156564238 hypothetical protein LOC129293 [Homo sapiens]
(456 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156564238 hypothetical protein LOC129293 [Homo sapiens] 932 0.0
gi|239752785 PREDICTED: UPF0632 protein A [Homo sapiens] 481 e-136
gi|239747336 PREDICTED: UPF0632 protein A [Homo sapiens] 481 e-136
gi|239741161 PREDICTED: UPF0632 protein A [Homo sapiens] 481 e-136
gi|21450761 hypothetical protein LOC221908 [Homo sapiens] 34 0.24
gi|11496882 ELK4 protein isoform b [Homo sapiens] 33 0.70
gi|41872448 ELK4 protein isoform a [Homo sapiens] 33 0.70
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 32 1.6
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 31 2.7
gi|167555125 low density lipoprotein receptor-related protein 3 ... 30 3.5
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 30 3.5
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 30 3.5
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens] 30 3.5
gi|239508966 PREDICTED: hypothetical protein [Homo sapiens] 30 3.5
gi|189491759 p21-activated kinase 3 isoform d [Homo sapiens] 30 3.5
gi|189491757 p21-activated kinase 3 isoform c [Homo sapiens] 30 3.5
gi|189491755 p21-activated kinase 3 isoform b [Homo sapiens] 30 3.5
gi|189491753 p21-activated kinase 3 isoform a [Homo sapiens] 30 3.5
gi|189491751 p21-activated kinase 3 isoform a [Homo sapiens] 30 3.5
gi|4505601 p21-activated kinase 3 isoform a [Homo sapiens] 30 3.5
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 30 3.5
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 30 3.5
gi|13324688 bromodomain and WD repeat domain containing 2 [Homo ... 30 3.5
gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 30 4.5
gi|72534732 dehydrogenase/reductase (SDR family) member 12 isofo... 30 4.5
gi|222352127 sidekick 2 [Homo sapiens] 30 5.9
gi|83367077 mucin 16 [Homo sapiens] 30 5.9
gi|239756326 PREDICTED: hypothetical protein isoform 3 [Homo sap... 30 5.9
gi|239756324 PREDICTED: hypothetical protein isoform 2 [Homo sap... 30 5.9
gi|239750836 PREDICTED: hypothetical protein XP_002347575 isofor... 30 5.9
>gi|156564238 hypothetical protein LOC129293 [Homo sapiens]
Length = 456
Score = 932 bits (2409), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 1 MSPWSWFLLQTLCLLPTGAASRRGAPGTANCELKPQQSELNSFLWTIKRDPPSYFFGTIH 60
MSPWSWFLLQTLCLLPTGAASRRGAPGTANCELKPQQSELNSFLWTIKRDPPSYFFGTIH
Sbjct: 1 MSPWSWFLLQTLCLLPTGAASRRGAPGTANCELKPQQSELNSFLWTIKRDPPSYFFGTIH 60
Query: 61 VPYTRVWDFIPDNSKEAFLQSSIVYFELDLTDPYTISALTSCQMLPQGENLQDVLPRDIY 120
VPYTRVWDFIPDNSKEAFLQSSIVYFELDLTDPYTISALTSCQMLPQGENLQDVLPRDIY
Sbjct: 61 VPYTRVWDFIPDNSKEAFLQSSIVYFELDLTDPYTISALTSCQMLPQGENLQDVLPRDIY 120
Query: 121 CRLKRHLEYVKLMMPLWMTPDQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTEVDI 180
CRLKRHLEYVKLMMPLWMTPDQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTEVDI
Sbjct: 121 CRLKRHLEYVKLMMPLWMTPDQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTEVDI 180
Query: 181 KSRGVPVLDLFLAQEAERLRKQTGAVEKVEEQCHPLNGLNFSQVPNFINATLPPQERITA 240
KSRGVPVLDLFLAQEAERLRKQTGAVEKVEEQCHPLNGLNFSQVPNFINATLPPQERITA
Sbjct: 181 KSRGVPVLDLFLAQEAERLRKQTGAVEKVEEQCHPLNGLNFSQVPNFINATLPPQERITA 240
Query: 241 QEIDSYLRRELIYKRNERIGKRVKALLEEFPDKGFFFAFGAGHFMGNNTVLDVLRREGYE 300
QEIDSYLRRELIYKRNERIGKRVKALLEEFPDKGFFFAFGAGHFMGNNTVLDVLRREGYE
Sbjct: 241 QEIDSYLRRELIYKRNERIGKRVKALLEEFPDKGFFFAFGAGHFMGNNTVLDVLRREGYE 300
Query: 301 VEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTLPPLVSRPGSA 360
VEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTLPPLVSRPGSA
Sbjct: 301 VEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTLPPLVSRPGSA 360
Query: 361 DTPSEAEQRFRKKRRRSQRRPRLRQFSDLWVRLEESDIVPQLQVPVLDRHISTELRLPRR 420
DTPSEAEQRFRKKRRRSQRRPRLRQFSDLWVRLEESDIVPQLQVPVLDRHISTELRLPRR
Sbjct: 361 DTPSEAEQRFRKKRRRSQRRPRLRQFSDLWVRLEESDIVPQLQVPVLDRHISTELRLPRR 420
Query: 421 GHSHHSQMVASSACLSLWTPVFWVLVLAFQTETPLL 456
GHSHHSQMVASSACLSLWTPVFWVLVLAFQTETPLL
Sbjct: 421 GHSHHSQMVASSACLSLWTPVFWVLVLAFQTETPLL 456
>gi|239752785 PREDICTED: UPF0632 protein A [Homo sapiens]
Length = 517
Score = 481 bits (1239), Expect = e-136
Identities = 262/466 (56%), Positives = 304/466 (65%), Gaps = 62/466 (13%)
Query: 12 LCLLPTGAASRRGAPGTANCELKPQQSELNSFLWTIKRDPPSYFFGTIHVPYTRVWDFIP 71
L L A +R P C Q +LNSFLWTI+RDPP+Y FGTIHVPYTRVWDFIP
Sbjct: 10 LAALLATARARPQPPDGGQCRPPGSQRDLNSFLWTIRRDPPAYLFGTIHVPYTRVWDFIP 69
Query: 72 DNSKEAFLQSSIVYFELDLTDPYTISALTSCQMLPQGENLQDVLPRDIYCRLKRHLEYVK 131
DNSK AF S+ VYFELDLTDPYTISAL SCQ+LP GENLQDVLP ++Y RLKRHL+YVK
Sbjct: 70 DNSKAAFQASTRVYFELDLTDPYTISALASCQLLPHGENLQDVLPHELYWRLKRHLDYVK 129
Query: 132 LMMPLWMTPDQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTEVDIKSRGVPVLDLF 191
LMMP WMTP QRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTE D++ RGVPVLDL+
Sbjct: 130 LMMPSWMTPAQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTERDVRFRGVPVLDLY 189
Query: 192 LAQEAERLRKQTGAVEKVEEQCHPL-NGLNFSQV-------------------------- 224
LAQ+AE+++K TGAVE+VEEQCHPL NGLNFSQV
Sbjct: 190 LAQQAEKMKKTTGAVEQVEEQCHPLNNGLNFSQVLFALNQTLLQQESVRAGSLQASYTTE 249
Query: 225 -----------------------PNFINATLPPQERITAQEIDSYLRRELIYKRNERIGK 261
PNFIN TLPP E++TAQEIDSY R+ELIYKRNER+GK
Sbjct: 250 DLIKHYNCGDLSAVIFNHDTSQLPNFINTTLPPHEQVTAQEIDSYFRQELIYKRNERMGK 309
Query: 262 RVKALLEEFPDKGFFFAFGAGHFMGNNTVLDVLRREGYEVEHAPAGRPIHKGKSKKTSTR 321
RV ALL E DK FFAFGAGHF+GNNTV+D+LR+ G EV+H PAG+ IH + +
Sbjct: 310 RVMALLRENEDKICFFAFGAGHFLGNNTVIDILRQAGLEVDHTPAGQAIHSPAPQSPAPS 369
Query: 322 PT-LSTIFAPKVPTLEVPAPEAVSSGHSTLPPLVSRPGSA------DTPSEAEQ--RFRK 372
P ST AP P VP +V+ T PP P + D+ S+ E+ R RK
Sbjct: 370 PEGTSTSPAPVTPAAAVPEAPSVT---PTAPPEDEDPALSPHLLLPDSLSQLEEFGRQRK 426
Query: 373 KRRRSQRRPRLRQFSDLWVRLEESDIVPQLQVPVLDRHISTELRLP 418
+R R RQF+DLWVR+E+S +P+ H S + P
Sbjct: 427 WHKRQSTHQRPRQFNDLWVRIEDSTTASPPPLPLQPTHSSGTAKPP 472
>gi|239747336 PREDICTED: UPF0632 protein A [Homo sapiens]
Length = 517
Score = 481 bits (1239), Expect = e-136
Identities = 262/466 (56%), Positives = 304/466 (65%), Gaps = 62/466 (13%)
Query: 12 LCLLPTGAASRRGAPGTANCELKPQQSELNSFLWTIKRDPPSYFFGTIHVPYTRVWDFIP 71
L L A +R P C Q +LNSFLWTI+RDPP+Y FGTIHVPYTRVWDFIP
Sbjct: 10 LAALLATARARPQPPDGGQCRPPGSQRDLNSFLWTIRRDPPAYLFGTIHVPYTRVWDFIP 69
Query: 72 DNSKEAFLQSSIVYFELDLTDPYTISALTSCQMLPQGENLQDVLPRDIYCRLKRHLEYVK 131
DNSK AF S+ VYFELDLTDPYTISAL SCQ+LP GENLQDVLP ++Y RLKRHL+YVK
Sbjct: 70 DNSKAAFQASTRVYFELDLTDPYTISALASCQLLPHGENLQDVLPHELYWRLKRHLDYVK 129
Query: 132 LMMPLWMTPDQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTEVDIKSRGVPVLDLF 191
LMMP WMTP QRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTE D++ RGVPVLDL+
Sbjct: 130 LMMPSWMTPAQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTERDVRFRGVPVLDLY 189
Query: 192 LAQEAERLRKQTGAVEKVEEQCHPL-NGLNFSQV-------------------------- 224
LAQ+AE+++K TGAVE+VEEQCHPL NGLNFSQV
Sbjct: 190 LAQQAEKMKKTTGAVEQVEEQCHPLNNGLNFSQVLFALNQTLLQQESVRAGSLQASYTTE 249
Query: 225 -----------------------PNFINATLPPQERITAQEIDSYLRRELIYKRNERIGK 261
PNFIN TLPP E++TAQEIDSY R+ELIYKRNER+GK
Sbjct: 250 DLIKHYNCGDLSAVIFNHDTSQLPNFINTTLPPHEQVTAQEIDSYFRQELIYKRNERMGK 309
Query: 262 RVKALLEEFPDKGFFFAFGAGHFMGNNTVLDVLRREGYEVEHAPAGRPIHKGKSKKTSTR 321
RV ALL E DK FFAFGAGHF+GNNTV+D+LR+ G EV+H PAG+ IH + +
Sbjct: 310 RVMALLRENEDKICFFAFGAGHFLGNNTVIDILRQAGLEVDHTPAGQAIHSPAPQSPAPS 369
Query: 322 PT-LSTIFAPKVPTLEVPAPEAVSSGHSTLPPLVSRPGSA------DTPSEAEQ--RFRK 372
P ST AP P VP +V+ T PP P + D+ S+ E+ R RK
Sbjct: 370 PEGTSTSPAPVTPAAAVPEAPSVT---PTAPPEDEDPALSPHLLLPDSLSQLEEFGRQRK 426
Query: 373 KRRRSQRRPRLRQFSDLWVRLEESDIVPQLQVPVLDRHISTELRLP 418
+R R RQF+DLWVR+E+S +P+ H S + P
Sbjct: 427 WHKRQSTHQRPRQFNDLWVRIEDSTTASPPPLPLQPTHSSGTAKPP 472
>gi|239741161 PREDICTED: UPF0632 protein A [Homo sapiens]
Length = 517
Score = 481 bits (1239), Expect = e-136
Identities = 262/466 (56%), Positives = 304/466 (65%), Gaps = 62/466 (13%)
Query: 12 LCLLPTGAASRRGAPGTANCELKPQQSELNSFLWTIKRDPPSYFFGTIHVPYTRVWDFIP 71
L L A +R P C Q +LNSFLWTI+RDPP+Y FGTIHVPYTRVWDFIP
Sbjct: 10 LAALLATARARPQPPDGGQCRPPGSQRDLNSFLWTIRRDPPAYLFGTIHVPYTRVWDFIP 69
Query: 72 DNSKEAFLQSSIVYFELDLTDPYTISALTSCQMLPQGENLQDVLPRDIYCRLKRHLEYVK 131
DNSK AF S+ VYFELDLTDPYTISAL SCQ+LP GENLQDVLP ++Y RLKRHL+YVK
Sbjct: 70 DNSKAAFQASTRVYFELDLTDPYTISALASCQLLPHGENLQDVLPHELYWRLKRHLDYVK 129
Query: 132 LMMPLWMTPDQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTEVDIKSRGVPVLDLF 191
LMMP WMTP QRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTE D++ RGVPVLDL+
Sbjct: 130 LMMPSWMTPAQRGKGLYADYLFNAIAGNWERKRPVWVMLMVNSLTERDVRFRGVPVLDLY 189
Query: 192 LAQEAERLRKQTGAVEKVEEQCHPL-NGLNFSQV-------------------------- 224
LAQ+AE+++K TGAVE+VEEQCHPL NGLNFSQV
Sbjct: 190 LAQQAEKMKKTTGAVEQVEEQCHPLNNGLNFSQVLFALNQTLLQQESVRAGSLQASYTTE 249
Query: 225 -----------------------PNFINATLPPQERITAQEIDSYLRRELIYKRNERIGK 261
PNFIN TLPP E++TAQEIDSY R+ELIYKRNER+GK
Sbjct: 250 DLIKHYNCGDLSAVIFNHDTSQLPNFINTTLPPHEQVTAQEIDSYFRQELIYKRNERMGK 309
Query: 262 RVKALLEEFPDKGFFFAFGAGHFMGNNTVLDVLRREGYEVEHAPAGRPIHKGKSKKTSTR 321
RV ALL E DK FFAFGAGHF+GNNTV+D+LR+ G EV+H PAG+ IH + +
Sbjct: 310 RVMALLRENEDKICFFAFGAGHFLGNNTVIDILRQAGLEVDHTPAGQAIHSPAPQSPAPS 369
Query: 322 PT-LSTIFAPKVPTLEVPAPEAVSSGHSTLPPLVSRPGSA------DTPSEAEQ--RFRK 372
P ST AP P VP +V+ T PP P + D+ S+ E+ R RK
Sbjct: 370 PEGTSTSPAPVTPAAAVPEAPSVT---PTAPPEDEDPALSPHLLLPDSLSQLEEFGRQRK 426
Query: 373 KRRRSQRRPRLRQFSDLWVRLEESDIVPQLQVPVLDRHISTELRLP 418
+R R RQF+DLWVR+E+S +P+ H S + P
Sbjct: 427 WHKRQSTHQRPRQFNDLWVRIEDSTTASPPPLPLQPTHSSGTAKPP 472
>gi|21450761 hypothetical protein LOC221908 [Homo sapiens]
Length = 253
Score = 34.3 bits (77), Expect = 0.24
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 11/101 (10%)
Query: 330 PKVPTLEVPAPE-----AVSSGHSTLPPLVSRPGSADTPSEAEQRFRKKRRRSQRRPRLR 384
P+VP L P PE ++S + P PG +E R+ R +R+ R R
Sbjct: 28 PQVPQLRAPVPEPGLDLSLSPRPDSPQPRHGSPGRRKGRAE-----RRGAARQRRQVRFR 82
Query: 385 QFSDLWVRLEESDIVPQ-LQVPVLDRHISTELRLPRRGHSH 424
VR E VPQ L++PVL ++ L L SH
Sbjct: 83 LTPPSPVRSEPQPAVPQELEMPVLKSSLALGLELRAAAGSH 123
>gi|11496882 ELK4 protein isoform b [Homo sapiens]
Length = 405
Score = 32.7 bits (73), Expect = 0.70
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 305 PAGRPIHKGKSKKTSTRPT---LSTIFAPKVPTLEVPAPEA-VSSGHSTLPPLVSRPGSA 360
P I G S S+ T L T+ +PK+P+LE P + V + +T PP+ S P
Sbjct: 203 PVAATISIGPSISPSSEETIQALETLVSPKLPSLEAPTSASNVMTAFATTPPISSIPPLQ 262
Query: 361 DTP 363
+ P
Sbjct: 263 EPP 265
>gi|41872448 ELK4 protein isoform a [Homo sapiens]
Length = 431
Score = 32.7 bits (73), Expect = 0.70
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 305 PAGRPIHKGKSKKTSTRPT---LSTIFAPKVPTLEVPAPEA-VSSGHSTLPPLVSRPGSA 360
P I G S S+ T L T+ +PK+P+LE P + V + +T PP+ S P
Sbjct: 203 PVAATISIGPSISPSSEETIQALETLVSPKLPSLEAPTSASNVMTAFATTPPISSIPPLQ 262
Query: 361 DTP 363
+ P
Sbjct: 263 EPP 265
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 31.6 bits (70), Expect = 1.6
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 13/61 (21%)
Query: 317 KTSTRPTLSTIFAPKV----PTLEVPAPEAVSSGH--------STLPPLVSRPGSADTPS 364
K+ RP +S+ AP+ P LEV +PEA + S+LPPL S G A PS
Sbjct: 520 KSEPRPPISSPRAPQTRAVKPRLEV-SPEAQPTARLPSPTDSPSSLPPLPSSSGQASVPS 578
Query: 365 E 365
E
Sbjct: 579 E 579
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 30.8 bits (68), Expect = 2.7
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 293 VLRREGYEVEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTLPP 352
VL G PA P+ G P+ ++ T PA +S +T+PP
Sbjct: 901 VLPAAGLSAAQPPASYPL-PGSPLAAGVLPSQNSSVLSTAATSPQPASAGISQAQATVPP 959
Query: 353 LV--SRPGSADTPSEA 366
V PG A +PS A
Sbjct: 960 AVPTHTPGPAPSPSPA 975
>gi|167555125 low density lipoprotein receptor-related protein 3
[Homo sapiens]
Length = 770
Score = 30.4 bits (67), Expect = 3.5
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 6/78 (7%)
Query: 336 EVPAPEAVSSGHSTLPPLVSRPGSADTPSEAEQRFRKKRRRSQRR------PRLRQFSDL 389
E P +PP+ P + + + Q R RR RR P R+ L
Sbjct: 548 EAPPSYGQLIAQGLIPPVEDFPVYSASQASVLQNLRTAMRRQMRRHASRRGPSRRRLGRL 607
Query: 390 WVRLEESDIVPQLQVPVL 407
W RL P+ Q+P+L
Sbjct: 608 WNRLFHRPRAPRGQIPLL 625
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 30.4 bits (67), Expect = 3.5
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 301 VEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSG---------HSTLP 351
V AP GRP+ + +++ P VP P P ++ T+P
Sbjct: 22 VSPAPWGRPLRRSRARPGPCPPE------GLVPRAPPPGPRPTAAATRATFRVPERRTVP 75
Query: 352 PLVSRPGSADTPSEAEQRFRKKRRRSQRRPR 382
P RP P A +R R +RPR
Sbjct: 76 PCPRRPARPSQPPSAARRERALLANPPQRPR 106
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 30.4 bits (67), Expect = 3.5
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 301 VEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSG---------HSTLP 351
V AP GRP+ + +++ P VP P P ++ T+P
Sbjct: 22 VSPAPWGRPLRRSRARPGPCPPE------GLVPRAPPPGPRPTAAATRATFRVPERRTVP 75
Query: 352 PLVSRPGSADTPSEAEQRFRKKRRRSQRRPR 382
P RP P A +R R +RPR
Sbjct: 76 PCPRRPARPSQPPSAARRERALLANPPQRPR 106
>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 30.4 bits (67), Expect = 3.5
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 301 VEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSG---------HSTLP 351
V AP GRP+ + +++ P VP P P ++ T+P
Sbjct: 22 VSPAPWGRPLRRSRARPGPCPPE------GLVPRAPPPGPRPTAAATRATFRVPERRTVP 75
Query: 352 PLVSRPGSADTPSEAEQRFRKKRRRSQRRPR 382
P RP P A +R R +RPR
Sbjct: 76 PCPRRPARPSQPPSAARRERALLANPPQRPR 106
>gi|239508966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 30.4 bits (67), Expect = 3.5
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 15/91 (16%)
Query: 301 VEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSG---------HSTLP 351
V AP GRP+ + +++ P VP P P ++ T+P
Sbjct: 22 VSPAPWGRPLRRSRARPGPCPPE------GLVPRAPPPGPRPTAAATRATFRVPERRTVP 75
Query: 352 PLVSRPGSADTPSEAEQRFRKKRRRSQRRPR 382
P RP P A +R R +RPR
Sbjct: 76 PCPRRPARPSQPPSAARRERALLANPPQRPR 106
>gi|189491759 p21-activated kinase 3 isoform d [Homo sapiens]
Length = 559
Score = 30.4 bits (67), Expect = 3.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 306 AGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTL 350
A RP H +K TR + +I +P VP EV P A ++ STL
Sbjct: 207 APRPEH---TKSIYTRSVVESIASPAVPNKEVTPPSAENANSSTL 248
>gi|189491757 p21-activated kinase 3 isoform c [Homo sapiens]
Length = 565
Score = 30.4 bits (67), Expect = 3.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 306 AGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTL 350
A RP H +K TR + +I +P VP EV P A ++ STL
Sbjct: 213 APRPEH---TKSIYTRSVVESIASPAVPNKEVTPPSAENANSSTL 254
>gi|189491755 p21-activated kinase 3 isoform b [Homo sapiens]
Length = 580
Score = 30.4 bits (67), Expect = 3.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 306 AGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTL 350
A RP H +K TR + +I +P VP EV P A ++ STL
Sbjct: 228 APRPEH---TKSIYTRSVVESIASPAVPNKEVTPPSAENANSSTL 269
>gi|189491753 p21-activated kinase 3 isoform a [Homo sapiens]
Length = 544
Score = 30.4 bits (67), Expect = 3.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 306 AGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTL 350
A RP H +K TR + +I +P VP EV P A ++ STL
Sbjct: 192 APRPEH---TKSIYTRSVVESIASPAVPNKEVTPPSAENANSSTL 233
>gi|189491751 p21-activated kinase 3 isoform a [Homo sapiens]
Length = 544
Score = 30.4 bits (67), Expect = 3.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 306 AGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTL 350
A RP H +K TR + +I +P VP EV P A ++ STL
Sbjct: 192 APRPEH---TKSIYTRSVVESIASPAVPNKEVTPPSAENANSSTL 233
>gi|4505601 p21-activated kinase 3 isoform a [Homo sapiens]
Length = 544
Score = 30.4 bits (67), Expect = 3.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 306 AGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTL 350
A RP H +K TR + +I +P VP EV P A ++ STL
Sbjct: 192 APRPEH---TKSIYTRSVVESIASPAVPNKEVTPPSAENANSSTL 233
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 30.4 bits (67), Expect = 3.5
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 309 PIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTLPPLVSRPGSADTPSEAEQ 368
P S +++ + S+ AP +P PEA + P + PG + P E+
Sbjct: 42 PSSSSSSTSSTSSTSSSSTTAPLLPKAAREKPEAPAEPPGPGPGSGAHPGGSARPDAKEE 101
Query: 369 RFRKKRRRSQRRPRLR 384
+ ++ RR+ R R R
Sbjct: 102 QQQQLRRKINSRERKR 117
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 30.4 bits (67), Expect = 3.5
Identities = 50/199 (25%), Positives = 76/199 (38%), Gaps = 46/199 (23%)
Query: 294 LRREGYEVEHAPAGRPIHKGKSKKTSTRPTL-------STIFAPKVPTLEVPAPEA---- 342
L +G + P+ + K ++ K R TL S +P P L++ EA
Sbjct: 1003 LTADGTHCQQCPSCYALVKEEAAKLKARLTLTEGWLQGSDCGSPWGP-LDILLGEAPRGD 1061
Query: 343 VSSGHSTLP--------PLVSRPGSADTPSEAEQRFRKKRRRSQR--RPRLRQFSDLWVR 392
V GH LP ++S G+ E QR K R +Q + Q +DL
Sbjct: 1062 VYQGHHLLPGAREAFLEQMMSLEGAVKAAREQLQRLNKGARCAQAGSQKTCTQLADLEAV 1121
Query: 393 LEESD--------IVPQLQVPVLD-------RHISTELRLPRRGHSHHSQMVASSACLSL 437
LE S+ I+ L++P H++TE R R H + +A++A
Sbjct: 1122 LESSEEEILHAAAILASLEIPQEGPSQPTKWSHLATEARALARSHRDTATKIAATA---- 1177
Query: 438 WTPVFWVLVLAFQTETPLL 456
W +LA T LL
Sbjct: 1178 -----WRALLASNTSYALL 1191
>gi|13324688 bromodomain and WD repeat domain containing 2 [Homo
sapiens]
Length = 1224
Score = 30.4 bits (67), Expect = 3.5
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 25 APGTANCELKPQQSELNSFLWTIKRDPPSYFFGTIHVP-YTRVWDFIPDNSKEAFLQS-- 81
A G A CE++ + W +D IH P Y +W+ D + + +S
Sbjct: 101 AAGVAQCEIQEHAKPIQDVQWLWNQDASRDLLLAIHPPNYIVLWN--ADTGTKLWKKSYA 158
Query: 82 -SIVYFELDLTDPYTISALTS 101
+I+ F D DP ++ LTS
Sbjct: 159 DNILSFSFDPFDPSHLTLLTS 179
>gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens]
Length = 951
Score = 30.0 bits (66), Expect = 4.5
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 316 KKTSTRPTLSTIFAPKVPTLEVPAPEAVSSGHSTLPPLVSRPGSADTPSEAEQRFRKKRR 375
+++ST P +PTLEV P+ SS S D P E E+ +KK+
Sbjct: 714 EESSTTPCPLLTGGRPLPTLEVKPPDRPSSK------------SKDPPREEEKEKKKKKH 761
Query: 376 RSQRRPRLR 384
+ + R R R
Sbjct: 762 KKRSRTRSR 770
>gi|72534732 dehydrogenase/reductase (SDR family) member 12 isoform
1 [Homo sapiens]
Length = 271
Score = 30.0 bits (66), Expect = 4.5
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 336 EVPAPEAVSSGHSTLPPLVSRPGSADTPSEAEQRFRKKRRRSQRRPRLRQFSDLWVRLEE 395
+V E + GH + PG ADTP EQ RK +Q L +F L + + E
Sbjct: 159 QVVLTERWAQGHPAIHFSSMHPGWADTPDRNEQELRKVVGEAQTASPLPRF--LEIMMHE 216
Query: 396 SDIVPQ 401
PQ
Sbjct: 217 GKCQPQ 222
>gi|222352127 sidekick 2 [Homo sapiens]
Length = 2172
Score = 29.6 bits (65), Expect = 5.9
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 293 VLRREGYEVEHAPAGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPA-PEAVSSGHSTL- 350
+ R + Y + +G P H + TST+ ++F PK P P S STL
Sbjct: 2094 ISRAQAYSYTESDSGEPDHTTVTNSTSTQQ--GSLFRPKASRTPTPQNPPNPPSQQSTLY 2151
Query: 351 -PPLVSRPGS 359
PP PGS
Sbjct: 2152 RPPSSLAPGS 2161
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 29.6 bits (65), Expect = 5.9
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 315 SKKTSTRPTLSTIFA--PKVPTLEVPAPEAVSSGHSTLPPLVSRPGSADTPSEAEQRFRK 372
S++TS+ ST+ + P T EV EA+SS +++P S+DT E R
Sbjct: 9296 SEETSSATEKSTVLSSVPTGATTEVSRTEAISSSRTSIPGPAQSTMSSDTSMETITRIST 9355
Query: 373 KRRRSQ 378
R +
Sbjct: 9356 PLTRKE 9361
>gi|239756326 PREDICTED: hypothetical protein isoform 3 [Homo
sapiens]
Length = 114
Score = 29.6 bits (65), Expect = 5.9
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 306 AGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPE-AVSSGHSTLPPLVSRPGSADTPS 364
AG+ H +++ + T P+ L P P AV+ GH P + G P+
Sbjct: 38 AGQRAHSARAEAGAAAGTR----LPRQAPLLAPDPRTAVTPGHERESPFSRKNGVFFEPN 93
Query: 365 EAEQRFRKKRRRSQR-RPRLR 384
A +FRK+ R +R RP+ R
Sbjct: 94 RALLKFRKQTRTGRRGRPQER 114
>gi|239756324 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 5.9
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 306 AGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPE-AVSSGHSTLPPLVSRPGSADTPS 364
AG+ H +++ + T P+ L P P AV+ GH P + G P+
Sbjct: 118 AGQRAHSARAEAGAAAGTR----LPRQAPLLAPDPRTAVTPGHERESPFSRKNGVFFEPN 173
Query: 365 EAEQRFRKKRRRSQR-RPRLR 384
A +FRK+ R +R RP+ R
Sbjct: 174 RALLKFRKQTRTGRRGRPQER 194
>gi|239750836 PREDICTED: hypothetical protein XP_002347575 isoform 2
[Homo sapiens]
Length = 114
Score = 29.6 bits (65), Expect = 5.9
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 306 AGRPIHKGKSKKTSTRPTLSTIFAPKVPTLEVPAPE-AVSSGHSTLPPLVSRPGSADTPS 364
AG+ H +++ + T P+ L P P AV+ GH P + G P+
Sbjct: 38 AGQRAHSARAEAGAAAGTR----LPRQAPLLAPDPRTAVTPGHERESPFSRKNGVFFEPN 93
Query: 365 EAEQRFRKKRRRSQR-RPRLR 384
A +FRK+ R +R RP+ R
Sbjct: 94 RALLKFRKQTRTGRRGRPQER 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,929,836
Number of Sequences: 37866
Number of extensions: 906342
Number of successful extensions: 3294
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 3272
Number of HSP's gapped (non-prelim): 48
length of query: 456
length of database: 18,247,518
effective HSP length: 106
effective length of query: 350
effective length of database: 14,233,722
effective search space: 4981802700
effective search space used: 4981802700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.