Guide to the Human Genome
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Name: PPAPDC1B Sequence: fasta or formatted (264aa) NCBI GI: 156523237
Description:

phosphatidic acid phosphatase type 2 domain containing 1B isoform 1

Referenced in:

Lipid Metabolism

Other entries for this name:
alt prot [216aa] phosphatidic acid phosphatase type 2 domain containing 1B isoform 2
alt prot [176aa] phosphatidic acid phosphatase type 2 domain containing 1B isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         31           4
 C cysteine            3.4          9           1
 D aspartate           4.9         13           1
 E glutamate           3.0          8           2
 F phenylalanine       9.5         25           2
 G glycine             6.1         16           1
 H histidine           2.3          6           2
 I isoleucine          3.0          8           1
 K lysine              5.3         14           2
 L leucine            11.4         30           2
 M methionine          2.3          6           1
 N asparagine          1.5          4           1
 P proline             6.4         17           2
 Q glutamine           3.0          8           1
 R arginine            4.9         13           1
 S serine              6.1         16           2
 T threonine           4.2         11           1
 V valine              5.7         15           2
 W tryptophan          1.1          3           1
 Y tyrosine            4.2         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidic acid phosphatase type 2 domain contain... 
PPAPDC1B              0.783   phosphatidic acid phosphatase type 2 domain contain...
PPAPDC1A              0.601   phosphatidic acid phosphatase type 2 domain containi...
PPAPDC1B              0.549   phosphatidic acid phosphatase type 2 domain contain...
PPAP2C                0.098   phosphatidic acid phosphatase type 2C isoform 1 [Homo...
PPAP2C                0.098   phosphatidic acid phosphatase type 2C isoform 2 [Hom...
PPAP2C                0.098   phosphatidic acid phosphatase type 2C isoform 3 [Hom...
PPAP2A                0.083   phosphatidic acid phosphatase type 2A isoform 2 [Hom...
PPAP2A                0.083   phosphatidic acid phosphatase type 2A isoform 1 [Hom...
PPAP2B                0.083   phosphatidic acid phosphatase type 2B 
PPAP2B                0.083   phosphatidic acid phosphatase type 2B 
PRG-3                 0.065   plasticity related gene 3 
PRG-3                 0.065   plasticity related gene 3 
PAP2D                 0.061   phosphatidic acid phosphatase type 2d isoform 1 [Hom...
PAP2D                 0.061   phosphatidic acid phosphatase type 2d isoform 2 [Hom...
LPPR4                 0.044   plasticity related gene 1 
LPPR2                 0.040   lipid phosphate phosphatase-related protein type 2 [...
DOLPP1                0.019   dolichyl pyrophosphate phosphatase 1 isoform a [Homo...
PPAPDC2               0.012   phosphatidic acid phosphatase type 2 domain containi...
OCA2                  0.008   oculocutaneous albinism II 
C12orf64              0.008   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.008   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.008   PREDICTED: hypothetical protein LOC283310 
ASTL                  0.006   astacin-like metalloendopeptidase 
PPAPDC3               0.006   phosphatidic acid phosphatase type 2 domain contain...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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