Guide to the Human Genome
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Name: PPAPDC1A Sequence: fasta or formatted (271aa) NCBI GI: 73611920
Description:

phosphatidic acid phosphatase type 2 domain containing 1A

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         20           2
 C cysteine            3.7         10           1
 D aspartate           3.7         10           1
 E glutamate           5.2         14           2
 F phenylalanine       7.0         19           2
 G glycine             6.3         17           2
 H histidine           2.6          7           2
 I isoleucine          7.0         19           2
 K lysine              4.4         12           2
 L leucine            10.3         28           2
 M methionine          2.6          7           2
 N asparagine          2.2          6           1
 P proline             7.0         19           2
 Q glutamine           1.8          5           1
 R arginine            5.9         16           2
 S serine              6.6         18           2
 T threonine           5.2         14           2
 V valine              6.6         18           2
 W tryptophan          1.1          3           1
 Y tyrosine            3.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatidic acid phosphatase type 2 domain containi... 
PPAPDC1B              0.587   phosphatidic acid phosphatase type 2 domain contain...
PPAPDC1B              0.495   phosphatidic acid phosphatase type 2 domain contain...
PPAPDC1B              0.317   phosphatidic acid phosphatase type 2 domain contain...
PPAP2C                0.077   phosphatidic acid phosphatase type 2C isoform 1 [Homo...
PPAP2C                0.077   phosphatidic acid phosphatase type 2C isoform 2 [Hom...
PPAP2C                0.077   phosphatidic acid phosphatase type 2C isoform 3 [Hom...
PPAP2A                0.073   phosphatidic acid phosphatase type 2A isoform 1 [Hom...
PAP2D                 0.071   phosphatidic acid phosphatase type 2d isoform 1 [Hom...
PAP2D                 0.071   phosphatidic acid phosphatase type 2d isoform 2 [Hom...
PPAP2A                0.069   phosphatidic acid phosphatase type 2A isoform 2 [Hom...
PPAP2B                0.060   phosphatidic acid phosphatase type 2B 
PPAP2B                0.060   phosphatidic acid phosphatase type 2B 
PRG-3                 0.053   plasticity related gene 3 
PRG-3                 0.053   plasticity related gene 3 
LPPR2                 0.049   lipid phosphate phosphatase-related protein type 2 [...
LPPR4                 0.038   plasticity related gene 1 
DOLPP1                0.015   dolichyl pyrophosphate phosphatase 1 isoform a [Homo...
ZCCHC7                0.008   zinc finger, CCHC domain containing 7 
CDCP2                 0.008   CUB domain containing protein 2 
SSPN                  0.006   sarcospan isoform 2 
SSPN                  0.006   sarcospan isoform 1 
ATG2A                 0.006   autophagy related 2A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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