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Search of human proteins with 156151430
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156151430 armadillo repeat containing 9 [Homo sapiens]
(665 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156151430 armadillo repeat containing 9 [Homo sapiens] 1316 0.0
gi|222080092 WD repeat domain 91 [Homo sapiens] 54 4e-07
gi|148227672 catenin (cadherin-associated protein), beta 1, 88kD... 38 0.034
gi|148233338 catenin (cadherin-associated protein), beta 1, 88kD... 38 0.034
gi|4503131 catenin (cadherin-associated protein), beta 1, 88kDa ... 38 0.034
gi|60685227 SECIS binding protein 2-like [Homo sapiens] 36 0.100
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 35 0.17
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 35 0.17
gi|13654270 LAS1-like [Homo sapiens] 35 0.22
gi|53729346 plakophilin 1 isoform 1b [Homo sapiens] 34 0.38
gi|53729344 plakophilin 1 isoform 1a [Homo sapiens] 34 0.38
gi|169218113 PREDICTED: similar to plakophilin 1, partial [Homo ... 34 0.38
gi|56711320 hypothetical protein LOC145407 [Homo sapiens] 34 0.50
gi|42740903 MTERF domain containing 2 [Homo sapiens] 33 0.65
gi|4503523 eukaryotic translation initiation factor 3 subunit D ... 33 0.65
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 33 0.85
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 33 0.85
gi|38176300 nestin [Homo sapiens] 33 1.1
gi|21735415 centromere protein B [Homo sapiens] 33 1.1
gi|222136585 timeless homolog [Homo sapiens] 33 1.1
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 33 1.1
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 33 1.1
gi|51477718 TATA box binding protein-associated factor, RNA poly... 33 1.1
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 33 1.1
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 33 1.1
gi|55956788 nucleolin [Homo sapiens] 32 1.4
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 32 1.4
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 32 1.4
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 32 1.4
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 32 1.4
>gi|156151430 armadillo repeat containing 9 [Homo sapiens]
Length = 665
Score = 1316 bits (3405), Expect = 0.0
Identities = 665/665 (100%), Positives = 665/665 (100%)
Query: 1 MGDILAHESELLGLVKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQK 60
MGDILAHESELLGLVKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQK
Sbjct: 1 MGDILAHESELLGLVKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQK 60
Query: 61 DLVAAFDNGDQKVFFDLWEEHISSSIRDGDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEE 120
DLVAAFDNGDQKVFFDLWEEHISSSIRDGDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEE
Sbjct: 61 DLVAAFDNGDQKVFFDLWEEHISSSIRDGDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEE 120
Query: 121 LDEKISYFKTYLETKGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLE 180
LDEKISYFKTYLETKGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLE
Sbjct: 121 LDEKISYFKTYLETKGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLE 180
Query: 181 KFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRYNKIQADYHN 240
KFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRYNKIQADYHN
Sbjct: 181 KFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRYNKIQADYHN 240
Query: 241 LIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRA 300
LIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRA
Sbjct: 241 LIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRA 300
Query: 301 SLAPVKLKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAY 360
SLAPVKLKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAY
Sbjct: 301 SLAPVKLKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWRLTTSHPGEQRETVLQAY 360
Query: 361 ISNDLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEG 420
ISNDLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEG
Sbjct: 361 ISNDLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEG 420
Query: 421 RLKEEDKDIITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSV 480
RLKEEDKDIITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSV
Sbjct: 421 RLKEEDKDIITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSV 480
Query: 481 ALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGHENHEIQPYVNGALYSILSVPSIREEAR 540
ALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGHENHEIQPYVNGALYSILSVPSIREEAR
Sbjct: 481 ALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGHENHEIQPYVNGALYSILSVPSIREEAR 540
Query: 541 AMGMEDILRCFIKEGNAEMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEEDHDIMEAD 600
AMGMEDILRCFIKEGNAEMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEEDHDIMEAD
Sbjct: 541 AMGMEDILRCFIKEGNAEMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEEDHDIMEAD 600
Query: 601 LDKDELIQPQLGELSGEKLLTTEYLGIMTNTGKTRRKGLANVQWSGDEPLQRPVTPGGHR 660
LDKDELIQPQLGELSGEKLLTTEYLGIMTNTGKTRRKGLANVQWSGDEPLQRPVTPGGHR
Sbjct: 601 LDKDELIQPQLGELSGEKLLTTEYLGIMTNTGKTRRKGLANVQWSGDEPLQRPVTPGGHR 660
Query: 661 NGYPV 665
NGYPV
Sbjct: 661 NGYPV 665
>gi|222080092 WD repeat domain 91 [Homo sapiens]
Length = 747
Score = 54.3 bits (129), Expect = 4e-07
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 24/205 (11%)
Query: 14 LVKEYLDFAEFEDTLKTFSKECKIKGKPLCKTVGGSFRDSKSLTIQKDLVAAFDNGDQKV 73
LV+EYL F F TL+ E K + FR K + + L+ +D +
Sbjct: 11 LVREYLLFRGFTHTLRQLDAEIKADKEK-------GFRVDKIVDQLQQLMQVYDLAALRD 63
Query: 74 FFDLWEEHISSSIRD-GDSFAQKLEFYLHIHFAIYLLKYSVGRPDKEELDEKISYFKTYL 132
++ E + S + D KL+ L + +Y ++ R DK + +
Sbjct: 64 YWSYLERRLFSRLEDIYRPTIHKLKTSLFRFYLVYTIQ--TNRNDKAQ---------EFF 112
Query: 133 ETKGAALSQTTEFLPFYALPFVPNPMVHPSFKELFQDSWTPELKLKLEKFLALISKASNT 192
+ L E+ ++ LPF+P+P +P+F F W + L FL+++ +
Sbjct: 113 AKQATELQNQAEWKDWFVLPFLPSPDTNPTFATYFSRQWADTFIVSLHNFLSVLFQCMPV 172
Query: 193 PKLLTIYKENGQSNK-----EILQQ 212
P +L E ++N+ E+L+Q
Sbjct: 173 PVILNFDAECQRTNQVQEENEVLRQ 197
>gi|148227672 catenin (cadherin-associated protein), beta 1, 88kDa
[Homo sapiens]
Length = 781
Score = 37.7 bits (86), Expect = 0.034
Identities = 58/304 (19%), Positives = 116/304 (38%), Gaps = 31/304 (10%)
Query: 210 LQQLHQQLVEAERRSVTYLKRYNKIQADYHNLIGVTAELVDSL----EATVSGKMITPEY 265
L +L + + +V++ ++ + + + H+ TA + E V + E+
Sbjct: 7 LMELDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDTSQVLYEW 66
Query: 266 LQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRASLAPVKLKDVPLLPSLDYEKLKKDL 325
Q FS Q +D T + +RA++ P L + +PS ++
Sbjct: 67 EQG-----FSQSFTQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDAAHPTN 121
Query: 326 ILGSDRLKAFLLQALRWRLTTSHPGEQ-RETVLQAYISNDLLDCYSHNQRSVLQLLHSTS 384
+ RL + P + + V+ D + + + +LL+
Sbjct: 122 V---QRL--------------AEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDED 164
Query: 385 DVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEGRLKEEDKDIITRENVLGALQKFSL 444
VV A +++ + R + ++ +++ + R + D+ T G L S
Sbjct: 165 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV-RTMQNTNDVETARCTAGTLHNLSH 223
Query: 445 RRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGLVL 504
R A+ + G I LV +L P D L Y++ L NL L G M ++AG +
Sbjct: 224 HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 280
Query: 505 KVLS 508
K+++
Sbjct: 281 KMVA 284
>gi|148233338 catenin (cadherin-associated protein), beta 1, 88kDa
[Homo sapiens]
Length = 781
Score = 37.7 bits (86), Expect = 0.034
Identities = 58/304 (19%), Positives = 116/304 (38%), Gaps = 31/304 (10%)
Query: 210 LQQLHQQLVEAERRSVTYLKRYNKIQADYHNLIGVTAELVDSL----EATVSGKMITPEY 265
L +L + + +V++ ++ + + + H+ TA + E V + E+
Sbjct: 7 LMELDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDTSQVLYEW 66
Query: 266 LQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRASLAPVKLKDVPLLPSLDYEKLKKDL 325
Q FS Q +D T + +RA++ P L + +PS ++
Sbjct: 67 EQG-----FSQSFTQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDAAHPTN 121
Query: 326 ILGSDRLKAFLLQALRWRLTTSHPGEQ-RETVLQAYISNDLLDCYSHNQRSVLQLLHSTS 384
+ RL + P + + V+ D + + + +LL+
Sbjct: 122 V---QRL--------------AEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDED 164
Query: 385 DVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEGRLKEEDKDIITRENVLGALQKFSL 444
VV A +++ + R + ++ +++ + R + D+ T G L S
Sbjct: 165 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV-RTMQNTNDVETARCTAGTLHNLSH 223
Query: 445 RRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGLVL 504
R A+ + G I LV +L P D L Y++ L NL L G M ++AG +
Sbjct: 224 HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 280
Query: 505 KVLS 508
K+++
Sbjct: 281 KMVA 284
>gi|4503131 catenin (cadherin-associated protein), beta 1, 88kDa
[Homo sapiens]
Length = 781
Score = 37.7 bits (86), Expect = 0.034
Identities = 58/304 (19%), Positives = 116/304 (38%), Gaps = 31/304 (10%)
Query: 210 LQQLHQQLVEAERRSVTYLKRYNKIQADYHNLIGVTAELVDSL----EATVSGKMITPEY 265
L +L + + +V++ ++ + + + H+ TA + E V + E+
Sbjct: 7 LMELDMAMEPDRKAAVSHWQQQSYLDSGIHSGATTTAPSLSGKGNPEEEDVDTSQVLYEW 66
Query: 266 LQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRASLAPVKLKDVPLLPSLDYEKLKKDL 325
Q FS Q +D T + +RA++ P L + +PS ++
Sbjct: 67 EQG-----FSQSFTQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDAAHPTN 121
Query: 326 ILGSDRLKAFLLQALRWRLTTSHPGEQ-RETVLQAYISNDLLDCYSHNQRSVLQLLHSTS 384
+ RL + P + + V+ D + + + +LL+
Sbjct: 122 V---QRL--------------AEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDED 164
Query: 385 DVVRQYMARLINAFASLAEGRLYLAQNTKVLQMLEGRLKEEDKDIITRENVLGALQKFSL 444
VV A +++ + R + ++ +++ + R + D+ T G L S
Sbjct: 165 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV-RTMQNTNDVETARCTAGTLHNLSH 223
Query: 445 RRPLQTAMIQDGLIFWLVDVLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGLVL 504
R A+ + G I LV +L P D L Y++ L NL L G M ++AG +
Sbjct: 224 HREGLLAIFKSGGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 280
Query: 505 KVLS 508
K+++
Sbjct: 281 KMVA 284
>gi|60685227 SECIS binding protein 2-like [Homo sapiens]
Length = 1056
Score = 36.2 bits (82), Expect = 0.100
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 9/81 (11%)
Query: 575 LPDGVLESDDDEDEDDEED--HDIMEADLDKDELIQPQLGELSGEKLLTTEYLGIMTNTG 632
L G+LE ++DEDE++EED H+ + ++ + I+ + E ++ + T LG N
Sbjct: 938 LVPGMLEEEEDEDEEEEEDYTHEPISVEVQLNSRIESWVSET--QRTMETLQLGKTLNGS 995
Query: 633 KTRRKGLANVQWSGDEPLQRP 653
+ NV+ SG+E + P
Sbjct: 996 EE-----DNVEQSGEEEAEAP 1011
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 35.4 bits (80), Expect = 0.17
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 574 ELPDGVLESDDDEDEDDEEDHDIMEADLDKDE 605
ELP+ E++DDEDEDD+ED D + D D D+
Sbjct: 1683 ELPEE--EAEDDEDEDDDEDDDDEDDDEDDDD 1712
Score = 33.9 bits (76), Expect = 0.50
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 569 QLNSEELPDGVLESDDDEDEDDEEDHDIMEADL--DKDELIQPQLGELSG 616
+L EE D E DD++D+D+++D D + DL D +E + E +G
Sbjct: 1683 ELPEEEAEDDEDEDDDEDDDDEDDDEDDDDEDLRTDSEESLPEAAAEAAG 1732
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 35.4 bits (80), Expect = 0.17
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 517 EIQPYVNGALYSILSVPSI----REEARAMGMEDILRCFI------KEGNAEMIRQIEFI 566
E N L S+ +PS+ ++ + + D+ C I +E E+++QI ++
Sbjct: 45 EFLSMANVELSSLARLPSLNKLRKQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYL 104
Query: 567 IK-QLNSEELPDGVLESDDDEDEDDEEDHD 595
E PD E D+D DEDDEE+ +
Sbjct: 105 DGFDQEDNEAPDSEEEDDEDGDEDDEEEEE 134
>gi|13654270 LAS1-like [Homo sapiens]
Length = 734
Score = 35.0 bits (79), Expect = 0.22
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 520 PYVNGALYSIL--SVPSIREEARAMGMEDILRCFIKEGNAEMIRQIEFIIKQLNSEELPD 577
PY +LY + + S EA+A E+ + + + E + E + Q+ EE D
Sbjct: 529 PYTLDSLYWSVKPASSSFGSEAKAQQQEE--QGSVNDVKEEEKEEKEVLPDQVEEEEEND 586
Query: 578 GVLESDDDEDEDDEEDHDIME 598
E ++DED++D+E+ D ME
Sbjct: 587 DQEEEEEDEDDEDDEEEDRME 607
>gi|53729346 plakophilin 1 isoform 1b [Homo sapiens]
Length = 747
Score = 34.3 bits (77), Expect = 0.38
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 454 QDGLIFWLVDVLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGH 513
Q G I LVD+L+ P+ + + L NL RST + + + + +S L
Sbjct: 285 QLGGICKLVDLLRSPN---QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT 341
Query: 514 ENHEIQPYVNGALYSILSVPSIREEARAMGMEDIL-RCFIK-----EGNAEMIRQI 563
N EIQ + G L+++ S ++EE A + + R I +GN+ M R++
Sbjct: 342 GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREV 397
>gi|53729344 plakophilin 1 isoform 1a [Homo sapiens]
Length = 726
Score = 34.3 bits (77), Expect = 0.38
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 454 QDGLIFWLVDVLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGH 513
Q G I LVD+L+ P+ + + L NL RST + + + + +S L
Sbjct: 285 QLGGICKLVDLLRSPN---QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT 341
Query: 514 ENHEIQPYVNGALYSILSVPSIREEARAMGMEDIL-RCFIK-----EGNAEMIRQI 563
N EIQ + G L+++ S ++EE A + + R I +GN+ M R++
Sbjct: 342 GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREV 397
>gi|169218113 PREDICTED: similar to plakophilin 1, partial [Homo
sapiens]
Length = 625
Score = 34.3 bits (77), Expect = 0.38
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%)
Query: 454 QDGLIFWLVDVLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGLVLKVLSDLLGH 513
Q G I LVD+L+ P+ + + L NL RST + + + + +S L
Sbjct: 184 QLGGICKLVDLLRSPN---QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT 240
Query: 514 ENHEIQPYVNGALYSILSVPSIREEARAMGMEDIL-RCFIK-----EGNAEMIRQI 563
N EIQ + G L+++ S ++EE A + + R I +GN+ M R++
Sbjct: 241 GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREV 296
>gi|56711320 hypothetical protein LOC145407 [Homo sapiens]
Length = 774
Score = 33.9 bits (76), Expect = 0.50
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 567 IKQLNSEELPDGVLESDDDEDEDDEEDHDIMEADLDKDE 605
+ QL SEE +DEDE+DEED D E D ++DE
Sbjct: 604 LDQLESEE-------GQEDEDEEDEEDEDEEEEDEEEDE 635
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 33.5 bits (75), Expect = 0.65
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 11/73 (15%)
Query: 544 MEDILRC----FIKEGNAEMIRQIEFIIKQLNSEELPDGVLESDD-------DEDEDDEE 592
++DILR F+ + + + K L EE SDD DED+DDEE
Sbjct: 290 LKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEEESESSTSDDKRASLDEDEDDDDEE 349
Query: 593 DHDIMEADLDKDE 605
D+D + D D D+
Sbjct: 350 DNDEDDNDEDDDD 362
Score = 32.3 bits (72), Expect = 1.4
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 581 ESDDDEDEDDEEDHDIMEADLDKDE 605
E DDDE+++DE+D+D + D D DE
Sbjct: 343 EDDDDEEDNDEDDNDEDDDDEDDDE 367
Score = 32.3 bits (72), Expect = 1.4
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 581 ESDDDEDEDDEEDHDIMEADLDKDE 605
E D+DED+DDE+D + + D D+D+
Sbjct: 353 EDDNDEDDDDEDDDEAEDNDEDEDD 377
Score = 30.0 bits (66), Expect = 7.2
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 581 ESDDDEDEDDEEDHDIMEADLDKDE 605
E DDDED+D+ ED+D E D D++E
Sbjct: 358 EDDDDEDDDEAEDNDEDEDD-DEEE 381
Score = 29.6 bits (65), Expect = 9.3
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 570 LNSEELPDGVLESDDDEDEDDEEDHDIMEA-DLDKDE 605
L+ +E D ++D+D++++D++D D EA D D+DE
Sbjct: 339 LDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDE 375
>gi|4503523 eukaryotic translation initiation factor 3 subunit D
[Homo sapiens]
Length = 548
Score = 33.5 bits (75), Expect = 0.65
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 14/63 (22%)
Query: 547 ILRCFIKEGNAEMIRQIE----FIIKQLNSE-----ELPDGVLESDDDEDEDDEEDHDIM 597
ILRC I ++ ++E I+K N + LPDG SD+DE+E++EE+ +
Sbjct: 490 ILRCVI-----DICMKLEEGKYLILKDPNKQVIRVYSLPDGTFSSDEDEEEEEEEEEEEE 544
Query: 598 EAD 600
E +
Sbjct: 545 EEE 547
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 33.1 bits (74), Expect = 0.85
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 9/57 (15%)
Query: 571 NSEELPD----GVLESDDDEDED-DEEDHD----IMEADLDKDELIQPQLGELSGEK 618
+ +E PD G +E DDE+ED DEE++D ++E + D+DE + + ++SGE+
Sbjct: 151 DDKEAPDSDAEGYVEGLDDEEEDEDEEEYDEDAQVVEDEEDEDEEEEGEEEDVSGEE 207
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
[Homo sapiens]
Length = 8797
Score = 33.1 bits (74), Expect = 0.85
Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 45/206 (21%)
Query: 93 AQKLEFYLHIHFAIYLLKYSVGRPDKEELDEKISYFKTYLETKGAALSQTTEFLPFYALP 152
A++L +H H S R + L++ + K + + A E+ +P
Sbjct: 3783 AERLRKEIHDHMEQLKELTSTVRKEHMTLEKGLHLAKEFSDKCKALTQWIAEYQEILHVP 3842
Query: 153 FVPNPMVHPSFKELFQDSWTPELKLKLEKFLALISKASNTPKLLTIYKENGQSNKEILQQ 212
P EL+ E K +L K+ +L + + +E G++ E++Q
Sbjct: 3843 EEPK-------MELY------EKKAQLSKYKSLQQTVLSHEPSVKSVREKGEALLELVQD 3889
Query: 213 LHQQLVEAERRSVTYLKRYNKIQADYHNLIGVTAELVDSLEATV---------------- 256
VT + +++Q+DY +L + E V SLEA V
Sbjct: 3890 ------------VTLKDKIDQLQSDYQDLCSIGKEHVFSLEAKVKDHEDYNSELQEVEKW 3937
Query: 257 ----SGKMITPEYLQSVCVRLFSNQM 278
SG+++ P+ L++ + + Q+
Sbjct: 3938 LLQMSGRLVAPDLLETSSLETITQQL 3963
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 32.7 bits (73), Expect = 1.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 554 EGNAEMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEED 593
+G AE + ++E ++L S E+P+G E ++ E+ EED
Sbjct: 1250 QGRAEALGKVESEQEELGSGEIPEGPQEEGEESREESEED 1289
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 32.7 bits (73), Expect = 1.1
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 570 LNSEELPDGVLESDDDEDEDDEEDHDIMEADLDKDELIQPQLGELSGEKLLTTEYL 625
L E D E +DDE+ED +ED D + + D DE+ P GE + YL
Sbjct: 504 LEGGEDSDSDSEEEDDEEED-DEDEDDDDDEEDGDEVPVPSFGEAMAYFAMVKRYL 558
>gi|222136585 timeless homolog [Homo sapiens]
Length = 1208
Score = 32.7 bits (73), Expect = 1.1
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 568 KQLNSEELPDGVLESDDDEDEDDEEDHDIMEADLDKDELIQPQLGELSGEKLLTTEYLG 626
K+L S LP+G D ED EE+ ++ E D +++E + ++ G +L+ E LG
Sbjct: 949 KKLASSILPNGAESLKDFCQEDLEEEENLPEEDSEEEEEGGSEAEQVQGSLVLSNENLG 1007
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 32.7 bits (73), Expect = 1.1
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 568 KQLNSEELPDGVLESDDDEDEDDEEDHDIMEADLDKDE 605
++L+ EE D +E DDD+DE EE+ E LDKDE
Sbjct: 208 EELDEEEDEDEDVEGDDDKDEVSEEEE---EFGLDKDE 242
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 32.7 bits (73), Expect = 1.1
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 568 KQLNSEELPDGVLESDDDEDEDDEEDHDIMEADLDKDE 605
++L+ EE D +E DDD+DE EE+ E LDKDE
Sbjct: 208 EELDEEEDEDEDVEGDDDKDEVSEEEE---EFGLDKDE 242
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 32.7 bits (73), Expect = 1.1
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 573 EELPDGVLESDDDEDEDDEEDHDIMEADLDKDE 605
E D +DDDEDEDDE++ + + D D+D+
Sbjct: 323 EMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDK 355
Score = 31.6 bits (70), Expect = 2.5
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 558 EMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEEDHDIMEADLDKDEL 606
+M+R++ + N ++ + + D+DEDED++ED + E D ++ L
Sbjct: 319 DMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEEDCSEEYL 367
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 32.7 bits (73), Expect = 1.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 546 DILRCFI------KEGNAEMIRQIEFIIK-QLNSEELPDGVLESDDDEDEDDEEDHD 595
D+ C I +E E+++QI ++ E PD E D+D DEDDEE+ +
Sbjct: 119 DLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEEDDEDGDEDDEEEEE 175
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 32.7 bits (73), Expect = 1.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 546 DILRCFI------KEGNAEMIRQIEFIIK-QLNSEELPDGVLESDDDEDEDDEEDHD 595
D+ C I +E E+++QI ++ E PD E D+D DEDDEE+ +
Sbjct: 71 DLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEEDDEDGDEDDEEEEE 127
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 32.3 bits (72), Expect = 1.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 581 ESDDDEDEDDEEDHDIMEADLDKDE 605
E +DDEDEDD++D D + D + DE
Sbjct: 238 EEEDDEDEDDDDDEDDEDDDDEDDE 262
Score = 31.6 bits (70), Expect = 2.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 581 ESDDDEDEDDEEDHDIMEADLDKDELIQP 609
+ DDD+DEDDE+D D + + +++E +P
Sbjct: 244 DEDDDDDEDDEDDDDEDDEEEEEEEEEEP 272
Score = 31.2 bits (69), Expect = 3.2
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 568 KQLNSEELPDGVLESDDDEDEDDEEDHDIME 598
K+ +S+E D E D+++DED++ED D +E
Sbjct: 141 KKEDSDEEEDDDSEEDEEDDEDEDEDEDEIE 171
Score = 31.2 bits (69), Expect = 3.2
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 573 EELPDGVLESDDDEDEDDEEDHDIMEADLDKDE 605
EE D + DDDED++D++D D E + +++E
Sbjct: 238 EEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEE 270
Score = 30.8 bits (68), Expect = 4.2
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 581 ESDDDEDEDDEEDHDIMEADLDKDELIQ 608
E +DDED++D+ED D E D ++E ++
Sbjct: 185 EDEDDEDDEDDEDDDDDEEDDSEEEAME 212
Score = 30.4 bits (67), Expect = 5.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 567 IKQLNSEELPDGVLESDDDEDEDDEEDHDIMEADLDKDE 605
+K N E D + +D++D+DDE+D D + D +++E
Sbjct: 227 VKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEE 265
Score = 29.6 bits (65), Expect = 9.3
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 571 NSEELPDGVLESDDDEDEDDEEDHDIMEADLDKDELIQPQLGELSGE 617
+ EE + + DD++DEDD+++ D E + +++E ++ G+ E
Sbjct: 237 DEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKE 283
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 553 KEGNAEMIRQIEFIIKQLNSEELPDGVLESDDDEDEDDEEDHDIMEADLDKDE 605
+EG+ E + E + E DG E D+D+D+DD++D D + D D+DE
Sbjct: 238 QEGSVESSEEGE------DQEHEDDGEDEDDEDDDDDDDDDDDDDDED-DEDE 283
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 172 TPELKLKLEKFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRY 231
T LK K +K ++ + + K+ YKE + ++QL +QL EAE S
Sbjct: 1841 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEESQRINANR 1900
Query: 232 NKIQAD 237
K+Q +
Sbjct: 1901 RKLQRE 1906
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 172 TPELKLKLEKFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRY 231
T LK K +K ++ + + K+ YKE + ++QL +QL EAE S
Sbjct: 1848 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEESQRINANR 1907
Query: 232 NKIQAD 237
K+Q +
Sbjct: 1908 RKLQRE 1913
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 32.3 bits (72), Expect = 1.4
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 172 TPELKLKLEKFLALISKASNTPKLLTIYKENGQSNKEILQQLHQQLVEAERRSVTYLKRY 231
T LK K +K ++ + + K+ YKE + ++QL +QL EAE S
Sbjct: 1848 TKSLKQKDKKLKEILLQVEDERKMAEQYKEQAEKGNARVKQLKRQLEEAEEESQRINANR 1907
Query: 232 NKIQAD 237
K+Q +
Sbjct: 1908 RKLQRE 1913
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,176,488
Number of Sequences: 37866
Number of extensions: 1075174
Number of successful extensions: 8310
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 7101
Number of HSP's gapped (non-prelim): 724
length of query: 665
length of database: 18,247,518
effective HSP length: 109
effective length of query: 556
effective length of database: 14,120,124
effective search space: 7850788944
effective search space used: 7850788944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.