PKP1 32362

Name: PKP1	Sequence: fasta or formatted (726aa)		NCBI GI: 53729344
Description: plakophilin 1 isoform 1a		Referenced in: Cadherins and Related Proteins
Other entries for this name: alt prot [747aa] plakophilin 1 isoform 1b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.9 50 3 C cysteine 3.2 23 1 D aspartate 4.5 33 2 E glutamate 4.1 30 3 F phenylalanine 2.3 17 2 G glycine 6.6 48 2 H histidine 1.4 10 1 I isoleucine 3.3 24 2 K lysine 5.5 40 2 L leucine 9.6 70 3 M methionine 3.0 22 2 N asparagine 6.6 48 3 P proline 3.7 27 2 Q glutamine 5.9 43 2 R arginine 6.5 47 2 S serine 12.4 90 3 T threonine 5.5 40 2 V valine 3.9 28 2 W tryptophan 0.8 6 1 Y tyrosine 4.1 30 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 plakophilin 1 isoform 1a PKP1 0.992 plakophilin 1 isoform 1b LOC652798 0.859 PREDICTED: similar to plakophilin 1, partial PKP2 0.235 plakophilin 2 isoform 2a PKP2 0.220 plakophilin 2 isoform 2b PKP4 0.173 plakophilin 4 isoform b PKP4 0.173 plakophilin 4 isoform a CTNND2 0.166 catenin (cadherin-associated protein), delta 2 (neur... PKP3 0.163 plakophilin 3 ARVCF 0.154 armadillo repeat protein CTNND1 0.143 catenin, delta 1 isoform 3A CTNND1 0.143 catenin, delta 1 isoform 3A CTNND1 0.143 catenin, delta 1 isoform 3A CTNND1 0.143 catenin, delta 1 isoform 3B CTNND1 0.143 catenin, delta 1 isoform 3AB CTNND1 0.143 catenin, delta 1 isoform 1A CTNND1 0.143 catenin, delta 1 isoform 1A CTNND1 0.143 catenin, delta 1 isoform 1A CTNND1 0.143 catenin, delta 1 isoform 1B CTNND1 0.143 catenin, delta 1 isoform 1AB CTNND1 0.141 catenin, delta 1 isoform 3AC CTNND1 0.141 catenin, delta 1 isoform 3ABC CTNND1 0.141 catenin, delta 1 isoform 1ABC JUP 0.015 junction plakoglobin JUP 0.015 junction plakoglobin APC 0.012 adenomatous polyposis coli APC 0.012 adenomatous polyposis coli APC 0.012 adenomatous polyposis coli ARMC3 0.012 armadillo repeat containing 3 CTNNB1 0.011 catenin (cadherin-associated protein), beta 1, 88kD... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.