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Search of human proteins with 156119599
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156119599 transmembrane protein 215 [Homo sapiens]
(235 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156119599 transmembrane protein 215 [Homo sapiens] 486 e-138
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 39 0.005
gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo ... 36 0.025
gi|239757005 PREDICTED: hypothetical protein [Homo sapiens] 35 0.073
gi|239751519 PREDICTED: hypothetical protein [Homo sapiens] 35 0.073
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens] 32 0.36
gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens] 32 0.36
gi|153792190 neurogenic differentiation 4 [Homo sapiens] 32 0.62
gi|112789532 poliovirus receptor related 2 isoform delta precurs... 31 1.1
gi|24308237 phosphatidylinositol transfer protein, membrane-asso... 31 1.1
gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo ... 30 1.4
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 30 1.4
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 30 1.4
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 30 1.4
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 30 1.4
gi|11276067 snail 2 [Homo sapiens] 30 1.8
gi|120953251 neuron navigator 3 [Homo sapiens] 30 1.8
gi|87162455 hypothetical protein LOC23277 [Homo sapiens] 30 2.3
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens] 30 2.3
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens] 30 2.3
gi|145699133 KPL2 protein isoform 1 [Homo sapiens] 29 3.1
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 29 3.1
gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens] 29 3.1
gi|62739186 complement factor H isoform a precursor [Homo sapiens] 29 4.0
gi|118442839 complement factor H-related 1 [Homo sapiens] 29 4.0
gi|239758115 PREDICTED: similar to complement factor H-related 1... 29 4.0
gi|239758113 PREDICTED: similar to complement factor H-related 1... 29 4.0
gi|109826564 neurofibromin isoform 1 [Homo sapiens] 29 4.0
gi|4557793 neurofibromin isoform 2 [Homo sapiens] 29 4.0
gi|122114654 methyltransferase 10 domain containing [Homo sapiens] 29 4.0
>gi|156119599 transmembrane protein 215 [Homo sapiens]
Length = 235
Score = 486 bits (1251), Expect = e-138
Identities = 235/235 (100%), Positives = 235/235 (100%)
Query: 1 MRPDDINPRTGLVVALVSVFLVFGFMFTVSGMKGETLGNIPLLAIGPAICLPGIAAIALA 60
MRPDDINPRTGLVVALVSVFLVFGFMFTVSGMKGETLGNIPLLAIGPAICLPGIAAIALA
Sbjct: 1 MRPDDINPRTGLVVALVSVFLVFGFMFTVSGMKGETLGNIPLLAIGPAICLPGIAAIALA 60
Query: 61 RKTEGCTKWPENELLWVRKLPCFRKPKDKEVVELLRTPSDLESGKGSSDELAKKAGLRGK 120
RKTEGCTKWPENELLWVRKLPCFRKPKDKEVVELLRTPSDLESGKGSSDELAKKAGLRGK
Sbjct: 61 RKTEGCTKWPENELLWVRKLPCFRKPKDKEVVELLRTPSDLESGKGSSDELAKKAGLRGK 120
Query: 121 PPPQSQGEVSVASSINSPTPTEEGECQSLVQNGHQEETSRYLDGYCPSGSSLTYSALDVK 180
PPPQSQGEVSVASSINSPTPTEEGECQSLVQNGHQEETSRYLDGYCPSGSSLTYSALDVK
Sbjct: 121 PPPQSQGEVSVASSINSPTPTEEGECQSLVQNGHQEETSRYLDGYCPSGSSLTYSALDVK 180
Query: 181 CSARDRSECPEPEDSIFFVPQDSIIVCSYKQNSPYDRYCCYINQIQGRWDHETIV 235
CSARDRSECPEPEDSIFFVPQDSIIVCSYKQNSPYDRYCCYINQIQGRWDHETIV
Sbjct: 181 CSARDRSECPEPEDSIFFVPQDSIIVCSYKQNSPYDRYCCYINQIQGRWDHETIV 235
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 38.5 bits (88), Expect = 0.005
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 117 LRGKPPPQSQGEVSVASSINS----PTPTEEGECQSLVQNGHQEETSRYLDGYCPSGSSL 172
LR P Q G ++VA+ NS P G CQ L HQ + G L
Sbjct: 2456 LRVDIPQQPMGIIAVANDTNSCELSPCRINNGGCQDLCLLTHQGHVNCSCRGGRILQDDL 2515
Query: 173 TYSALDVKCSARDRSECPEPEDSIFFVPQDSIIVCSYKQNSPYDRYC 219
T A++ C A+D EC E F + D + C K + YC
Sbjct: 2516 TCRAVNSSCRAQDEFECANGECINFSLTCDGVPHCKDKSDEK-PSYC 2561
>gi|239746026 PREDICTED: hypothetical protein XP_002344173 [Homo
sapiens]
Length = 183
Score = 36.2 bits (82), Expect = 0.025
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 69 WPENELLWVRKLPCFRKPKDKEVVELLRTPSDLESGKGSSD---ELAKKAGLRGKP 121
WPEN+L P + P DK V++LLR P + +G+GS L+K L G+P
Sbjct: 50 WPENQL------PAYCSP-DKPVLQLLRCPVEEAAGRGSGHFHLSLSKSIALLGRP 98
>gi|239757005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 34.7 bits (78), Expect = 0.073
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 69 WPENELLWVRKLPCFRKPKDKEVVELLRTPSDLESGKGSSD---ELAKKAGLRGKP 121
WPEN+L P + P DK V++LLR P + +G+GS L++ L G+P
Sbjct: 50 WPENQL------PAYCSP-DKPVLQLLRCPVEEAAGRGSGHFHLSLSESIALLGRP 98
>gi|239751519 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 34.7 bits (78), Expect = 0.073
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 10/56 (17%)
Query: 69 WPENELLWVRKLPCFRKPKDKEVVELLRTPSDLESGKGSSD---ELAKKAGLRGKP 121
WPEN+L P + P DK V++LLR P + +G+GS L++ L G+P
Sbjct: 50 WPENQL------PAYCSP-DKPVLQLLRCPVEEAAGRGSGHFHLSLSESIALLGRP 98
>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
Length = 1528
Score = 32.3 bits (72), Expect = 0.36
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 81 PCFRKPKDKEVVELLRTP--SDLESGKGSSDELAKKAGLRGKPPPQSQGEVSVASSINSP 138
P ++ D+E ++ L S L + + + K++ S + +S++++P
Sbjct: 697 PILQEGMDEEKLKQLNCVEISALNGNRINVPMVRKRSVSNSTQTSSSSSQSETSSAVSTP 756
Query: 139 TPTEEGECQSLVQNGHQEETSRYLDGYCPSGSSLTYSALDVKCSARDRSECPEPEDSIFF 198
+P S + YL+G+ P S + ++ R+ PED++F+
Sbjct: 757 SPVTRTRSLSACN----KRVGMYLEGFDPFNQSTFNNVVEQNFKNRESY----PEDTVFY 808
Query: 199 VPQD 202
+P+D
Sbjct: 809 IPED 812
>gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]
Length = 1091
Score = 32.3 bits (72), Expect = 0.36
Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 81 PCFRKPKDKEVVELLRTP--SDLESGKGSSDELAKKAGLRGKPPPQSQGEVSVASSINSP 138
P ++ D+E ++ L S L + + + K++ S + +S++++P
Sbjct: 260 PILQEGMDEEKLKQLNCVEISALNGNRINVPMVRKRSVSNSTQTSSSSSQSETSSAVSTP 319
Query: 139 TPTEEGECQSLVQNGHQEETSRYLDGYCPSGSSLTYSALDVKCSARDRSECPEPEDSIFF 198
+P S + YL+G+ P S + ++ R+ PED++F+
Sbjct: 320 SPVTRTRSLSACN----KRVGMYLEGFDPFNQSTFNNVVEQNFKNRESY----PEDTVFY 371
Query: 199 VPQD 202
+P+D
Sbjct: 372 IPED 375
>gi|153792190 neurogenic differentiation 4 [Homo sapiens]
Length = 331
Score = 31.6 bits (70), Expect = 0.62
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 21/116 (18%)
Query: 87 KDKEVVELLRTPSDLESGKGSSDELAKKAGLRGKPPPQSQGEVSVASSINSPTPTEEGEC 146
K KE+ EL+ TPS ++ G GS +E+ K G + SS+ TEE +
Sbjct: 7 KSKEMGELVNTPSWMDKGLGSQNEV--------KEEESRPGTYGMLSSL-----TEEHD- 52
Query: 147 QSLVQNGHQEETSRYLDGYCPSGSSLTYSALD------VKCSARDRSECPEPEDSI 196
S+ + +EE P +T + L+ VK +AR+R+ D++
Sbjct: 53 -SIEEEEEEEEDGEKPKRRGPKKKKMTKARLERFRARRVKANARERTRMHGLNDAL 107
>gi|112789532 poliovirus receptor related 2 isoform delta precursor
[Homo sapiens]
Length = 538
Score = 30.8 bits (68), Expect = 1.1
Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 25/169 (14%)
Query: 30 SGMKGETLGNIPLLAIGPAICLPGIAAIALARKTEGCTKWPENELLWVRKLPCFRKPKDK 89
+G G +G I I A+ GI RK + E+E L P ++ P K
Sbjct: 355 AGATGGIIGGIIAAIIATAVAATGILICRQQRKEQTLQGAEEDEDL--EGPPSYKPPTPK 412
Query: 90 EVVELLRTPSDLESGKGSSDELAKK-----AG----------------LRGKPPPQSQGE 128
+E PS L + G+S+ K AG L + P G
Sbjct: 413 AKLEAQEMPSQLFT-LGASEHSPLKTPYFDAGASCTEQEMPRYHELPTLEERSGPLHPGA 471
Query: 129 VSVASSINSPTPTEEGECQSL-VQNGHQEETSRYLDGYCPSGSSLTYSA 176
S+ S I P E SL +++ EE YLD P +L+YS+
Sbjct: 472 TSLGSPIPVPPGPPAVEDVSLDLEDEEGEEEEEYLDKINPIYDALSYSS 520
>gi|24308237 phosphatidylinositol transfer protein,
membrane-associated 2 [Homo sapiens]
Length = 1349
Score = 30.8 bits (68), Expect = 1.1
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 22/167 (13%)
Query: 71 ENELLWVRKLPCFRKPKDKEVVELLRTPSDLESGKGSSDELAKKAGL----RGKPPPQSQ 126
E +L+ RK+ F + + E EL++ + + G E + G RG S
Sbjct: 248 EAQLMLSRKMAQFNEDGE-EATELVKHEAVSDQTSGEPPEPSSSNGEPLVGRGLKKQWST 306
Query: 127 GEVSVASSINSPTPTE----EGECQSLVQNGHQEETSRYLDGYCPSGSSLTYSALDV-KC 181
S SS +P+ E QS+ ++ + + D + + D+ K
Sbjct: 307 SSKSSRSSKRGASPSRHSISEWRMQSIARDSDESSDDEFFDAHEDLSDTEEMFPKDITKW 366
Query: 182 SARD---RSECPEPEDSIFFVPQDSIIVCSYKQNSPYDRYCCYINQI 225
S+ D + E PEPED+ QD + Y+Q +P R + Q+
Sbjct: 367 SSNDLMDKIESPEPEDT-----QDGL----YRQGAPEFRVASSVEQL 404
>gi|13325064 cadherin EGF LAG seven-pass G-type receptor 2 [Homo
sapiens]
Length = 2923
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 86 PKDKEVVELLRTPSDLESGKGSSDELAKKAGLRGKPPPQSQGEVSVASSINSPTP 140
P E LLR P LE GSS + G RG PPP+ S+ +N P
Sbjct: 2845 PTISEKSSLLRLP--LEQCTGSSRGSSASEGSRGGPPPRPPPRQSLQEQLNGVMP 2897
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 113 KKAGLRGKPPPQSQGEVSVASSINSPTPTEEGECQSL----VQNGHQEETSRYLDG 164
+K GL PP Q + + + S P EEGE + + + E + Y+DG
Sbjct: 316 RKGGLEEPQPPAEQAQATQNVYVPSTEPEEEGEADDVYIMDISSNISENLNYYIDG 371
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 113 KKAGLRGKPPPQSQGEVSVASSINSPTPTEEGECQSL----VQNGHQEETSRYLDG 164
+K GL PP Q + + + S P EEGE + + + E + Y+DG
Sbjct: 517 RKGGLEEPQPPAEQAQATQNVYVPSTEPEEEGEADDVYIMDISSNISENLNYYIDG 572
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 30.4 bits (67), Expect = 1.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 113 KKAGLRGKPPPQSQGEVSVASSINSPTPTEEGECQSL----VQNGHQEETSRYLDG 164
+K GL PP Q + + + S P EEGE + + + E + Y+DG
Sbjct: 517 RKGGLEEPQPPAEQAQATQNVYVPSTEPEEEGEADDVYIMDISSNISENLNYYIDG 572
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 30.4 bits (67), Expect = 1.4
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 27/120 (22%)
Query: 99 SDLESGKGSSD----ELAKKAGLRGKPPPQSQGE------------VSVASSINSPTPTE 142
SD ES SSD E ++ A +PPP ++ + VS ASS++S P+
Sbjct: 440 SDSESESSSSDSEANEPSQSASPEPEPPPTNKWQLDNWLNKVNPHKVSPASSVDSNIPSS 499
Query: 143 EGECQSLVQNGHQEET-SRYLDGYCPSGSSLTYSALDVKC------SARDRSECPEPEDS 195
+G + G ++ T + Y D P +S D K S R R + P DS
Sbjct: 500 QG----YKKEGREQGTGNSYTDTSGPKETSSATPGRDSKTIQKGSESGRGRQKSPAQSDS 555
>gi|11276067 snail 2 [Homo sapiens]
Length = 268
Score = 30.0 bits (66), Expect = 1.8
Identities = 27/93 (29%), Positives = 35/93 (37%), Gaps = 10/93 (10%)
Query: 98 PSDLESGKGSSDELAKKAGLRGKPPPQSQGEVSVASSINSPTPTEEGECQSLVQNGHQEE 157
P+ L G S L R PPP S S SP EE QS + + H E
Sbjct: 70 PNGLSPLSGYSSSLG-----RVSPPPPSDTSSKDHSGSESPISDEEERLQSKLSDPHAIE 124
Query: 158 TSRYLDGYCPSGSSLTYSAL----DVKCSARDR 186
++ C S T+S L + C A+ R
Sbjct: 125 AEKFQCNLCNKTYS-TFSGLAKHKQLHCDAQSR 156
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 94 LLRTPSDLESGKGSSDELAKKAGLRGKPPPQSQGEVSVASSINSPTPTEEGECQSLVQNG 153
L R+PSD +GK S DE GK PP G + SS P+ G + +G
Sbjct: 1034 LQRSPSD--AGKSSGDE--------GKKPPSGIGRSTATSSFGFKKPSGVGSSAMITSSG 1083
>gi|87162455 hypothetical protein LOC23277 [Homo sapiens]
Length = 1309
Score = 29.6 bits (65), Expect = 2.3
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 95 LRTPSDLESGKGSSDELAKKAGLRGKPPPQSQGEVSVASSINSPTPTEEGECQSLVQNGH 154
L TPS LE+G SS E + PP Q G SS + +E +G
Sbjct: 636 LETPSSLENGGPSSLESKSE-----DPPGQEAGSEEEGSSASGLAKVKELAETIAADDGT 690
Query: 155 QEETSRYLDGYCPSGSSLTYSALDVK 180
+ + C + S++ +A D++
Sbjct: 691 DPRSREVIRNACKAVGSISSTAFDIR 716
>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 84 RKPKDKEVVELLRTPSDLESGKGSSDE--LAKKAG-LRGKPPPQSQGEVSVASSINSPT 139
+K K +E + TP + K S + ++KKAG +G + QGEVS A+S +S T
Sbjct: 116 KKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTT 174
>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 29.6 bits (65), Expect = 2.3
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 84 RKPKDKEVVELLRTPSDLESGKGSSDE--LAKKAG-LRGKPPPQSQGEVSVASSINSPT 139
+K K +E + TP + K S + ++KKAG +G + QGEVS A+S +S T
Sbjct: 116 KKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKQGEVSKAASADSTT 174
>gi|145699133 KPL2 protein isoform 1 [Homo sapiens]
Length = 1822
Score = 29.3 bits (64), Expect = 3.1
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 121 PPPQSQGEVSVASS-INSPTPTEEGECQSLVQNGHQE 156
PPP+ + E + S + S TPT +G+ QS +G QE
Sbjct: 918 PPPEPEKEKEIHQSHVASKTPTAKGKPQSEAPHGKQE 954
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 29.3 bits (64), Expect = 3.1
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 122 PPQSQGEVSVASSINSPTPTEEGECQSLVQNGH--QEETSRYLDGYCPSGSSLTYSALD- 178
PP S E S S +S P E EC S+ + + E+ S + P+ ++TY +D
Sbjct: 2146 PPTSVSE-SAPSQTDSDVPPETEECPSITADANIDSEDESETI----PTDKTVTYKHMDP 2200
Query: 179 VKCSARDRSECPEPEDSIFFVPQ 201
+DRS P D P+
Sbjct: 2201 PPAPVQDRSPSPRHPDVSMVDPE 2223
>gi|94721340 SID1 transmembrane family, member 2 [Homo sapiens]
Length = 832
Score = 29.3 bits (64), Expect = 3.1
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 1 MRPDDINPRTGLVVALVSVFLVFGFMFTVSGMKGETLGNIPLLAIGPAICLPGIAAIALA 60
MRP+D L + + ++ L F F + GE + IPLL I +C + AL
Sbjct: 709 MRPNDFASYL-LAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCI---VCTSVVWGFALF 764
Query: 61 RKTEGCTKW 69
+G + W
Sbjct: 765 FFFQGLSTW 773
>gi|62739186 complement factor H isoform a precursor [Homo sapiens]
Length = 1231
Score = 28.9 bits (63), Expect = 4.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 116 GLRGKPPPQSQGEV-SVASSINSPTPTEEGECQSLVQ-NGHQEETSR 160
G G PPP G++ S S+ +P + E +CQ+L Q G++ T R
Sbjct: 1107 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCR 1153
>gi|118442839 complement factor H-related 1 [Homo sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 4.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 116 GLRGKPPPQSQGEV-SVASSINSPTPTEEGECQSLVQ-NGHQEETSR 160
G G PPP G++ S S+ +P + E +CQ+L Q G++ T R
Sbjct: 206 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCR 252
>gi|239758115 PREDICTED: similar to complement factor H-related 1
isoform 2 [Homo sapiens]
Length = 271
Score = 28.9 bits (63), Expect = 4.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 116 GLRGKPPPQSQGEV-SVASSINSPTPTEEGECQSLVQ-NGHQEETSR 160
G G PPP G++ S S+ +P + E +CQ+L Q G++ T R
Sbjct: 147 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCR 193
>gi|239758113 PREDICTED: similar to complement factor H-related 1
isoform 1 [Homo sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 4.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 116 GLRGKPPPQSQGEV-SVASSINSPTPTEEGECQSLVQ-NGHQEETSR 160
G G PPP G++ S S+ +P + E +CQ+L Q G++ T R
Sbjct: 206 GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCR 252
>gi|109826564 neurofibromin isoform 1 [Homo sapiens]
Length = 2839
Score = 28.9 bits (63), Expect = 4.0
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 93 ELLRTP-SDLESGKGSSDELAKKAGLRGKPP--PQSQGEVSVA 132
ELLRTP + L GKG+S + AG G PP Q+Q ++ VA
Sbjct: 649 ELLRTPGASLRKGKGNSS-MDSAAGCSGTPPICRQAQTKLEVA 690
>gi|4557793 neurofibromin isoform 2 [Homo sapiens]
Length = 2818
Score = 28.9 bits (63), Expect = 4.0
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 93 ELLRTP-SDLESGKGSSDELAKKAGLRGKPP--PQSQGEVSVA 132
ELLRTP + L GKG+S + AG G PP Q+Q ++ VA
Sbjct: 649 ELLRTPGASLRKGKGNSS-MDSAAGCSGTPPICRQAQTKLEVA 690
>gi|122114654 methyltransferase 10 domain containing [Homo sapiens]
Length = 562
Score = 28.9 bits (63), Expect = 4.0
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 20/120 (16%)
Query: 67 TKWPENELLWVRKLPCFRKPKDKEVVELLRTPSDLESGKGSSDELAKKAGLRGKP---PP 123
T W E ++L K+ R P KE V L T + S L +K R + P
Sbjct: 343 TTWIE-KILTDLKVQHKRVPCGKEEVSLFLTAIE-----NSWIHLRRKKRERVRQLREVP 396
Query: 124 QSQGEVSVASSINSPTPTEEGECQSLVQNGHQEET----------SRYLDGYCPSGSSLT 173
++ +V A PTP E G Q L + G QE T + ++G CPS SL+
Sbjct: 397 RAPEDVIQALEEKKPTPKESGNSQELAR-GPQERTPCGPALREGEAAAVEGPCPSQESLS 455
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,534,361
Number of Sequences: 37866
Number of extensions: 527155
Number of successful extensions: 1740
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1732
Number of HSP's gapped (non-prelim): 58
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.