Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: H2AFY Sequence: fasta or formatted (371aa) NCBI GI: 4758496
Description:

H2A histone family, member Y isoform 2

Referenced in:

Histones, Related Proteins, and Modifying Enzymes

Other entries for this name:
alt prot [369aa] H2A histone family, member Y isoform 1
alt prot [372aa] H2A histone family, member Y isoform 3
alt mRNA [371aa] H2A histone family, member Y isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         40           2
 C cysteine            0.8          3           1
 D aspartate           3.5         13           2
 E glutamate           5.9         22           2
 F phenylalanine       3.0         11           1
 G glycine             9.2         34           2
 H histidine           1.6          6           1
 I isoleucine          5.9         22           2
 K lysine             12.7         47           3
 L leucine             9.7         36           2
 M methionine          1.3          5           1
 N asparagine          4.0         15           1
 P proline             4.9         18           3
 Q glutamine           1.9          7           1
 R arginine            3.2         12           1
 S serine              8.4         31           3
 T threonine           4.6         17           2
 V valine              6.5         24           1
 W tryptophan          0.3          1           1
 Y tyrosine            1.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   H2A histone family, member Y isoform 2 
H2AFY                 1.000   H2A histone family, member Y isoform 2 
H2AFY                 0.993   H2A histone family, member Y isoform 3 
H2AFY                 0.925   H2A histone family, member Y isoform 1 
H2AFY2                0.678   H2A histone family, member Y2 
H2AFX                 0.193   H2A histone family, member X 
HIST2H2AB             0.185   histone cluster 2, H2ab 
HIST1H2AA             0.184   histone cluster 1, H2aa 
HIST2H2AA4            0.182   histone cluster 2, H2aa4 
HIST2H2AA3            0.182   histone cluster 2, H2aa3 
HIST2H2AC             0.182   histone cluster 2, H2ac 
HIST3H2A              0.182   histone cluster 3, H2a 
HIST1H2AC             0.181   histone cluster 1, H2ac 
H2AFJ                 0.180   H2A histone family, member J 
HIST1H2AB             0.180   histone cluster 1, H2ab 
HIST1H2AE             0.180   histone cluster 1, H2ae 
HIST1H2AD             0.180   histone cluster 1, H2ad 
HIST1H2AG             0.180   histone cluster 1, H2ag 
HIST1H2AI             0.180   histone cluster 1, H2ai 
HIST1H2AH             0.180   histone cluster 1, H2ah 
HIST1H2AK             0.180   histone cluster 1, H2ak 
HIST1H2AM             0.180   histone cluster 1, H2am 
HIST1H2AL             0.180   histone cluster 1, H2al 
HIST1H2AJ             0.180   histone cluster 1, H2aj 
H2AFZ                 0.138   H2A histone family, member Z 
H2AFV                 0.138   H2A histone family, member V isoform 1 
H2AFV                 0.118   H2A histone family, member V isoform 3 
H2AFV                 0.111   H2A histone family, member V isoform 2 
H2AFB2                0.070   H2A histone family, member B2 
H2AFB3                0.070   H2A histone family, member B3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press