Guide to the Human Genome
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Name: CFHR1 Sequence: fasta or formatted (330aa) NCBI GI: 118442839
Description:

complement factor H-related 1

Referenced in:

Complement

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.4          8           1
 C cysteine            6.1         20           1
 D aspartate           2.7          9           1
 E glutamate           7.9         26           2
 F phenylalanine       3.6         12           2
 G glycine             6.4         21           2
 H histidine           1.8          6           1
 I isoleucine          4.8         16           2
 K lysine              4.8         16           1
 L leucine             6.1         20           2
 M methionine          1.5          5           1
 N asparagine          5.5         18           2
 P proline             7.6         25           4
 Q glutamine           3.6         12           1
 R arginine            6.1         20           1
 S serine              9.7         32           2
 T threonine           7.0         23           2
 V valine              5.2         17           1
 W tryptophan          2.4          8           1
 Y tyrosine            4.8         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   complement factor H-related 1 
LOC100293069          1.000   PREDICTED: similar to complement factor H-related 1...
CFH                   0.588   complement factor H isoform a precursor 
LOC100293069          0.490   PREDICTED: similar to complement factor H-related 1...
CFHR2                 0.481   H factor (complement)-like 3 
CFHR5                 0.443   complement factor H-related 5 
CFHR3                 0.404   complement factor H-related 3 
CFHR4                 0.352   complement factor H-related 4 
F13B                  0.212   coagulation factor XIII B subunit precursor 
CFH                   0.152   complement factor H isoform b precursor 
APOH                  0.096   apolipoprotein H precursor 
CR1                   0.090   complement receptor 1 isoform S precursor 
CR1                   0.090   complement receptor 1 isoform F precursor 
CSMD3                 0.087   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.087   CUB and Sushi multiple domains 3 isoform 3 
CSMD3                 0.087   CUB and Sushi multiple domains 3 isoform 1 
SVEP1                 0.080   polydom 
CR2                   0.077   complement component (3d/Epstein Barr virus) recepto...
CR2                   0.077   complement component (3d/Epstein Barr virus) recepto...
CR1L                  0.074   complement component (3b/4b) receptor 1-like 
C4BPA                 0.072   complement component 4 binding protein, alpha chain p...
CD55                  0.067   decay accelerating factor for complement isoform 2 ...
CD55                  0.067   decay accelerating factor for complement isoform 1 p...
SELE                  0.064   selectin E precursor 
CD46                  0.058   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.058   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.058   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.058   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.058   CD46 antigen, complement regulatory protein isoform ...
CD46                  0.058   CD46 antigen, complement regulatory protein isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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