Guide to the Human Genome
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Name: SAMD10 Sequence: fasta or formatted (202aa) NCBI GI: 18129632
Description:

sterile alpha motif domain containing 10

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         15           2
 C cysteine            2.0          4           1
 D aspartate           3.0          6           1
 E glutamate           5.0         10           2
 F phenylalanine       3.0          6           1
 G glycine             6.9         14           2
 H histidine           4.5          9           1
 I isoleucine          1.5          3           1
 K lysine              3.5          7           2
 L leucine            12.9         26           2
 M methionine          1.5          3           1
 N asparagine          1.0          2           1
 P proline             5.4         11           2
 Q glutamine           7.9         16           2
 R arginine            9.9         20           2
 S serine              9.4         19           2
 T threonine           5.9         12           1
 V valine              5.4         11           2
 W tryptophan          1.5          3           1
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sterile alpha motif domain containing 10 
SAMD12                0.272   sterile alpha motif domain containing 12 isoform a ...
SAMD12                0.264   sterile alpha motif domain containing 12 isoform b ...
PPP1R9A               0.039   protein phosphatase 1, regulatory (inhibitor) subuni...
SHANK2                0.028   SH3 and multiple ankyrin repeat domains 2 isoform 1...
CNKSR2                0.028   connector enhancer of kinase suppressor of Ras 2 [Ho...
DGKD                  0.026   diacylglycerol kinase, delta 130kDa isoform 1 
DGKD                  0.026   diacylglycerol kinase, delta 130kDa isoform 2 
DGKH                  0.026   diacylglycerol kinase, eta isoform 2 
SAMD3                 0.023   sterile alpha motif domain containing 3 isoform b [...
SAMD3                 0.023   sterile alpha motif domain containing 3 isoform a [...
NFATC3                0.021   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.021   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.021   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.021   nuclear factor of activated T-cells, cytoplasmic, cal...
PPFIBP2               0.021   PTPRF interacting protein, binding protein 2 (lipri...
ZAK                   0.021   MLK-related kinase isoform 1 
WDSUB1                0.021   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.021   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.021   WD repeat, sterile alpha motif and U-box domain con...
C14orf174             0.021   hypothetical protein LOC161394 
SCML1                 0.018   sex comb on midleg-like 1 isoform a 
SCML1                 0.018   sex comb on midleg-like 1 isoform c 
SCML1                 0.018   sex comb on midleg-like 1 isoform c 
SCML1                 0.018   sex comb on midleg-like 1 isoform b 
SARM1                 0.018   sterile alpha and TIR motif containing 1 
SCML2                 0.018   sex comb on midleg-like 2 
SCML4                 0.016   sex comb on midleg-like 4 
KNDC1                 0.016   kinase non-catalytic C-lobe domain (KIND) containin...
PPFIBP1               0.013   PTPRF interacting protein binding protein 1 isoform ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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