Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 155969718
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|155969718 mitochondrial coiled-coil domain 1 [Homo sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|155969718 mitochondrial coiled-coil domain 1 [Homo sapiens] 245 6e-66
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 32 0.14
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 32 0.14
gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens] 31 0.19
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 30 0.42
gi|239756433 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo ... 30 0.55
gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo ... 30 0.55
gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferas... 30 0.55
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 30 0.55
gi|215982791 myosin VA isoform 1 [Homo sapiens] 29 0.94
gi|71061468 centromere protein E [Homo sapiens] 29 0.94
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 29 0.94
gi|12597655 centromere protein H [Homo sapiens] 28 1.2
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 28 1.2
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 28 1.2
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 28 1.2
gi|169209574 PREDICTED: hypothetical protein LOC400558 [Homo sap... 28 1.6
gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo sap... 28 1.6
gi|169211037 PREDICTED: similar to mitogen-activated protein kin... 28 1.6
gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo sap... 28 1.6
gi|239740950 PREDICTED: similar to mitogen-activated protein kin... 28 1.6
gi|7662088 Rho guanine nucleotide exchange factor (GEF) 12 [Homo... 28 1.6
gi|55749621 pleckstrin homology domain containing, family G, mem... 28 1.6
gi|157785668 coiled-coil domain containing 39 [Homo sapiens] 28 1.6
gi|221139761 zinc finger protein 853 [Homo sapiens] 28 2.1
gi|215982794 myosin VA isoform 2 [Homo sapiens] 28 2.1
gi|20149626 pleckstrin homology domain containing, family O memb... 28 2.1
gi|4507711 tetratricopeptide repeat domain 1 [Homo sapiens] 28 2.1
gi|119120918 coiled-coil domain containing 64 [Homo sapiens] 28 2.1
>gi|155969718 mitochondrial coiled-coil domain 1 [Homo sapiens]
Length = 119
Score = 245 bits (625), Expect = 6e-66
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MVLPLPWLSRYHFLRLLLPSWSLAPQGSHGCCSQNPKASMEEQTSSRGNGKMTSPPRGPG 60
MVLPLPWLSRYHFLRLLLPSWSLAPQGSHGCCSQNPKASMEEQTSSRGNGKMTSPPRGPG
Sbjct: 1 MVLPLPWLSRYHFLRLLLPSWSLAPQGSHGCCSQNPKASMEEQTSSRGNGKMTSPPRGPG 60
Query: 61 THRTAELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESLGGGA 119
THRTAELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESLGGGA
Sbjct: 61 THRTAELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESLGGGA 119
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform
2 [Homo sapiens]
Length = 8749
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 56 PRGPGTHRTAELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESL 115
P+ G A +++ +E L + E Y LL +E+Q L++ +++L++QM +SL
Sbjct: 785 PQEEGKEMFATMSKLKEQLTKVKECYSPLL------YESQQLLIPLEELEKQMTSFYDSL 838
Query: 116 G 116
G
Sbjct: 839 G 839
>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform
1 [Homo sapiens]
Length = 8797
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 56 PRGPGTHRTAELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESL 115
P+ G A +++ +E L + E Y LL +E+Q L++ +++L++QM +SL
Sbjct: 778 PQEEGKEMFATMSKLKEQLTKVKECYSPLL------YESQQLLIPLEELEKQMTSFYDSL 831
Query: 116 G 116
G
Sbjct: 832 G 832
>gi|10863903 thyroid hormone receptor interactor 12 [Homo sapiens]
Length = 1992
Score = 31.2 bits (69), Expect = 0.19
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 24 APQGSHGCCSQNPKASMEEQTSSRGNGKMTSPPRGPGTHRTAELA-RAEELLEQQL---- 78
APQG+ G E S G + RG H L R +L + +
Sbjct: 376 APQGAAGAVGMTTSGESESDDSEMGRLQALLEARGLPPHLFGPLGPRMSQLFHRTIGSGA 435
Query: 79 -ELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESLGG 117
Q LL+G + + E+Q L I+ + + ++E+LGG
Sbjct: 436 SSKAQQLLQGLQASDESQQLQAVIEMCQLLVMGNEETLGG 475
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 30.0 bits (66), Expect = 0.42
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 35 NPKASMEEQTSSRGNGKMTSPPRGPGTHRTAELARAEELLEQQLELYQALLEGQEGAWEA 94
N + + E Q + R + K R T AE+ + LL Q+ E ++ +E A
Sbjct: 1012 NQERAEELQEAERFSRKAAQAARDL-TRAEAEIELLQNLLRQKGEQFRLEMEKTGVGTGA 1070
Query: 95 QALVLKIQKLKEQMRRHQESL 115
+ VL+I+KL E M R + +
Sbjct: 1071 NSQVLEIEKLNETMERQRTEI 1091
>gi|239756433 PREDICTED: hypothetical protein [Homo sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 21 WSLAPQGSHGCCSQNPKASMEEQTSS------RGNGKMTSPPRGPGTHRTAELAR 69
W ++P G G + P+ +S+ RG + T PPRG T ++ E AR
Sbjct: 422 WPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPAR 476
>gi|239750970 PREDICTED: hypothetical protein XP_002347634 [Homo
sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 21 WSLAPQGSHGCCSQNPKASMEEQTSS------RGNGKMTSPPRGPGTHRTAELAR 69
W ++P G G + P+ +S+ RG + T PPRG T ++ E AR
Sbjct: 422 WPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPAR 476
>gi|239745376 PREDICTED: hypothetical protein XP_002343484 [Homo
sapiens]
Length = 513
Score = 29.6 bits (65), Expect = 0.55
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 21 WSLAPQGSHGCCSQNPKASMEEQTSS------RGNGKMTSPPRGPGTHRTAELAR 69
W ++P G G + P+ +S+ RG + T PPRG T ++ E AR
Sbjct: 422 WPVSPAGMGGALAGAPREGAGAPSSAVPVPLCRGRARDTGPPRGSLTGQSREPAR 476
>gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferase 2
[Homo sapiens]
Length = 542
Score = 29.6 bits (65), Expect = 0.55
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Query: 79 ELYQALLEGQEGAWEAQALVLK---------IQKLKEQMRRHQESLGGGA 119
E YQALL+ QE ++ +A LK +Q++ E+MR QE GA
Sbjct: 55 EYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGA 104
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 29.6 bits (65), Expect = 0.55
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 10 RYHFLRLLLPSWSLAPQGSHGCCSQNPKASMEEQTSSRGNGKMTSPPRGPGTHRTAELAR 69
R+H SWSL+P S + Q+ SR + SP P + A
Sbjct: 487 RHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPA- 545
Query: 70 AEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRR 110
A + ++L+ + + GA A+ + +KLK +M++
Sbjct: 546 ASPAVGEKLKKTEPAAGKETGA--AKPKLTPQEKLKLRMQK 584
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 28.9 bits (63), Expect = 0.94
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 67 LARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESL 115
L +A LLE QL+ + E EA+AL +IQ LKE+ R Q+ L
Sbjct: 1342 LKQANRLLESQLQSQKRSHEN-----EAEALRGEIQSLKEENNRQQQLL 1385
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 28.9 bits (63), Expect = 0.94
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 62 HRTAELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESL 115
HR A+ + + + + LEL L E QE E Q ++ K KE+M+R QE+L
Sbjct: 1556 HRKAKDSALQSIESKMLELTNRLQESQE---EIQIMI----KEKEEMKRVQEAL 1602
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 28.9 bits (63), Expect = 0.94
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 63 RTAELARAEELLEQQLELYQA--LLEGQEGAWEAQALVLKIQKLKEQMRRHQE 113
R EL R EEL Q+++ + L + +E + ++++ ++++EQMRR +E
Sbjct: 542 RQEELRRMEELHNQEMQKRKEMQLRQEEERRRREEEMMIRQREMEEQMRRQRE 594
>gi|12597655 centromere protein H [Homo sapiens]
Length = 247
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 74 LEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQES 114
++ LEL + +++ Q+ +W+ + +L I+K + Q+++ ES
Sbjct: 130 MKHLLELNKLIMKSQQESWDLEEKLLDIRKKRLQLKQASES 170
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 15 RLLLPSWSLAPQGSHGCCSQNPKASMEEQTSS 46
+LLL S APQ +G C + +A+ E+ T S
Sbjct: 885 KLLLEETSSAPQEQYGECGEKSEATQEQYTES 916
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 15 RLLLPSWSLAPQGSHGCCSQNPKASMEEQTSS 46
+LLL S APQ +G C + +A+ E+ T S
Sbjct: 885 KLLLEETSSAPQEQYGECGEKSEATQEQYTES 916
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 15 RLLLPSWSLAPQGSHGCCSQNPKASMEEQTSS 46
+LLL S APQ +G C + +A+ E+ T S
Sbjct: 885 KLLLEETSSAPQEQYGECGEKSEATQEQYTES 916
>gi|169209574 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 24 APQGSHGCCSQNPKASMEEQTSSRGNGKMTSPP 56
APQG+ G C +P++ S R + T PP
Sbjct: 151 APQGAVGTCRASPQSPCHRHPSLRSGLEWTQPP 183
>gi|169210581 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 24 APQGSHGCCSQNPKASMEEQTSSRGNGKMTSPP 56
APQG+ G C +P++ S R + T PP
Sbjct: 151 APQGAVGTCRASPQSPCHRHPSLRSGLEWTQPP 183
>gi|169211037 PREDICTED: similar to mitogen-activated protein
kinase 8 interacting protein 1 [Homo sapiens]
Length = 423
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 36 PKASMEEQTSSRGNGKMTSPPRGPGTHRTAELARAEEL-LEQQLELYQALL 85
PKA ++ +SRG G+ +GPG+ T R L L Q++L Q L
Sbjct: 34 PKAESGQEPASRGQGQSQGQSQGPGSGDTYRPKRPTTLNLFPQVQLSQDTL 84
>gi|169210101 PREDICTED: hypothetical protein LOC400558 [Homo
sapiens]
Length = 241
Score = 28.1 bits (61), Expect = 1.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 24 APQGSHGCCSQNPKASMEEQTSSRGNGKMTSPP 56
APQG+ G C +P++ S R + T PP
Sbjct: 151 APQGAVGTCRASPQSPCHRHPSLRSGLEWTQPP 183
>gi|239740950 PREDICTED: similar to mitogen-activated protein
kinase 8 interacting protein 1 [Homo sapiens]
Length = 442
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 36 PKASMEEQTSSRGNGKMTSPPRGPGTHRTAELARAEEL-LEQQLELYQALL 85
PKA ++ +SRG G+ +GPG+ T R L L Q++L Q L
Sbjct: 37 PKAESGQEPASRGQGQSQGQSQGPGSGDTYRPKRPTTLNLFPQVQLSQDTL 87
>gi|7662088 Rho guanine nucleotide exchange factor (GEF) 12 [Homo
sapiens]
Length = 1544
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 41 EEQTSSRGNGKMTSPPRGPGTHRTAELARAEEL 73
EE+ RG + PPR P H + + RA EL
Sbjct: 589 EEKGKRRGFPSILGPPRRPSRHDNSAIGRAMEL 621
>gi|55749621 pleckstrin homology domain containing, family G, member
3 [Homo sapiens]
Length = 1163
Score = 28.1 bits (61), Expect = 1.6
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 40 MEEQTSSRGNGKMTSPPRGPGTHRTAELARAEELLEQQLELYQALLEGQEGAWEAQALVL 99
+E + ++ S GP T + E+LE QL+ +Q LL G + + V
Sbjct: 451 VEPDPEAGSEQEVFSAVEGPSAEETPSDTESPEVLETQLDAHQGLL-GMDPPGDMVDFVA 509
Query: 100 --KIQKLKEQMRRHQESLGGGA 119
+ LK +E +GG A
Sbjct: 510 AESTEDLKALSSEEEEEMGGAA 531
>gi|157785668 coiled-coil domain containing 39 [Homo sapiens]
Length = 941
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 61 THRTAELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRRHQESLG 116
T + E+ +++ QQ+E + L+G+ + E QAL KI +L++ + + + G
Sbjct: 444 TLKQQEIMYSQDFHIQQVERRMSRLKGEINSEEKQALEAKIVELRKSLEEKKSTCG 499
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 27.7 bits (60), Expect = 2.1
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 73 LLEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQMRR 110
L +QQ +L Q LLE Q+ + Q L+ + ++L++Q ++
Sbjct: 255 LQQQQAQLQQQLLEQQQAQLQQQLLLQQQEQLQQQQQQ 292
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 63 RTAELARAEEL--LEQQLELYQALLEGQEGAWEAQALVLKIQKLKEQM 108
R +L EEL LEQQLE Q LE QE E + L Q+ + Q+
Sbjct: 355 RQLQLKLQEELQQLEQQLEQQQQQLEQQEVQLELTPVELGAQQQEVQL 402
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 66 ELARAEELLEQQLELYQALLEGQEGAWE--AQALVLKIQKLKEQMRRHQESL 115
E+A+A L++ L ++ L+ Q+ + E A+AL +IQ LKE+ R Q+ L
Sbjct: 1307 EIAQAYIGLKETNRLLESQLQSQKRSHENEAEALRGEIQSLKEENNRQQQLL 1358
>gi|20149626 pleckstrin homology domain containing, family O member
1 [Homo sapiens]
Length = 409
Score = 27.7 bits (60), Expect = 2.1
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 23 LAPQGSHGCCSQNPKASMEEQTSSRGNGKMTSPPRGPGTHRTAELARAEELLEQQLELYQ 82
L P C S S + S+R P P +L+R ++L+ ++LE Q
Sbjct: 261 LTPTEKGRCASLEEILSQRDAASARTLQLRAEEPPTPALPNPGQLSRIQDLVARKLEETQ 320
Query: 83 ALLEGQEG 90
LL +G
Sbjct: 321 ELLAEVQG 328
>gi|4507711 tetratricopeptide repeat domain 1 [Homo sapiens]
Length = 292
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 63 RTAELARAEELLEQQLELYQALLEGQEGAWEAQALVLKIQK-LKEQMRRHQESLGG 117
R AEL + L++ LE Y+++LE +A+ +++ K ++E+ R +E + G
Sbjct: 194 RRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLG 249
>gi|119120918 coiled-coil domain containing 64 [Homo sapiens]
Length = 573
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 66 ELARAEELLEQQLELYQALLEGQEGAWEAQALVLK--IQKLKEQMRRHQ 112
EL E LEQ+ + E +EG WE + L+ +++L++++ R Q
Sbjct: 137 ELTDKLEHLEQEKHELRRRFENREGEWEGRVSELESDVKQLQDELERQQ 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,294,371
Number of Sequences: 37866
Number of extensions: 230312
Number of successful extensions: 1123
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1076
Number of HSP's gapped (non-prelim): 103
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.