Guide to the Human Genome
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Name: C1orf129 Sequence: fasta or formatted (573aa) NCBI GI: 117956387
Description:

hypothetical protein LOC80133

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         28           2
 C cysteine            2.6         15           1
 D aspartate           5.6         32           2
 E glutamate           5.1         29           1
 F phenylalanine       4.7         27           1
 G glycine             2.8         16           1
 H histidine           1.9         11           2
 I isoleucine          5.8         33           2
 K lysine              7.0         40           2
 L leucine            14.8         85           2
 M methionine          3.7         21           1
 N asparagine          3.5         20           2
 P proline             4.4         25           2
 Q glutamine           5.4         31           2
 R arginine            2.4         14           2
 S serine              9.4         54           2
 T threonine           4.7         27           2
 V valine              7.0         40           2
 W tryptophan          0.7          4           1
 Y tyrosine            3.7         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC80133 
C1orf175              0.067   hypothetical protein LOC374977 
FLJ43860              0.058   hypothetical protein LOC389690 
LOC377711             0.045   PREDICTED: hypothetical protein LOC377711 isoform 5...
HEATR7A               0.045   HEAT repeat containing 7A isoform 1 
HEATR7B2              0.032   HEAT repeat family member 7B2 
C20orf132             0.030   hypothetical protein LOC140699 isoform 1 
HEATR7B1              0.023   PREDICTED: HEAT repeat containing 7B1 
HEATR7B1              0.022   PREDICTED: HEAT repeat containing 7B1 
HEATR7B1              0.020   PREDICTED: HEAT repeat containing 7B1 
C8orf73               0.014   hypothetical protein LOC642475 
ETNK2                 0.006   ethanolamine kinase 2 
NASP                  0.005   nuclear autoantigenic sperm protein isoform 2 
NASP                  0.005   nuclear autoantigenic sperm protein isoform 1 
NASP                  0.005   nuclear autoantigenic sperm protein isoform 3 
GCNT4                 0.005   core 2 beta-1,6-N-acetylglucosaminyltransferase 3 [Ho...
COBL                  0.005   cordon-bleu homolog 
KIF21A                0.005   kinesin family member 21A 
NIPBL                 0.005   delangin isoform B 
NIPBL                 0.005   delangin isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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