Guide to the Human Genome
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Name: LOC377711 Sequence: fasta or formatted (1218aa) NCBI GI: 113420243
Description:

PREDICTED: hypothetical protein LOC377711 isoform 5

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9        120           3
 C cysteine            3.0         36           2
 D aspartate           4.3         52           2
 E glutamate           6.7         81           2
 F phenylalanine       3.1         38           2
 G glycine             5.6         68           2
 H histidine           3.6         44           2
 I isoleucine          3.1         38           2
 K lysine              3.4         42           2
 L leucine            16.5        201           3
 M methionine          2.0         24           2
 N asparagine          1.8         22           1
 P proline             5.7         69           2
 Q glutamine           4.1         50           2
 R arginine            6.6         80           2
 S serine              6.8         83           3
 T threonine           4.8         58           3
 V valine              6.7         81           2
 W tryptophan          0.8         10           1
 Y tyrosine            1.7         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC377711 isoform 5... 
HEATR7A               0.981   HEAT repeat containing 7A isoform 1 
HEATR7B2              0.191   HEAT repeat family member 7B2 
HEATR7B1              0.174   PREDICTED: HEAT repeat containing 7B1 
HEATR7B1              0.173   PREDICTED: HEAT repeat containing 7B1 
HEATR7B1              0.171   PREDICTED: HEAT repeat containing 7B1 
FLJ43860              0.120   hypothetical protein LOC389690 
C1orf175              0.091   hypothetical protein LOC374977 
C20orf132             0.083   hypothetical protein LOC140699 isoform 1 
C8orf73               0.052   hypothetical protein LOC642475 
C20orf132             0.045   hypothetical protein LOC140699 isoform 2 
C20orf132             0.027   hypothetical protein LOC140699 isoform 3 
C1orf129              0.021   hypothetical protein LOC80133 
MRO                   0.021   maestro isoform d 
MRO                   0.021   maestro isoform a 
MRO                   0.006   maestro isoform c 
MRO                   0.006   maestro isoform b 
LOC100131540          0.003   PREDICTED: hypothetical protein 
LOC100131540          0.003   PREDICTED: hypothetical protein 
LOC100131540          0.003   PREDICTED: hypothetical protein 
GCN1L1                0.003   GCN1 general control of amino-acid synthesis 1-like ...
SLMAP                 0.003   sarcolemma associated protein 
STIM1                 0.003   stromal interaction molecule 1 precursor 
USP49                 0.003   ubiquitin thioesterase 49 
KIAA1632              0.003   hypothetical protein LOC57724 
LOC100291842          0.003   PREDICTED: hypothetical protein XP_002346016 
LOC100290358          0.003   PREDICTED: hypothetical protein XP_002346903 
LOC100294079          0.003   PREDICTED: hypothetical protein 
DST                   0.003   dystonin isoform 4 
DST                   0.003   dystonin isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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