Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 15487670
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo
sapiens]
(619 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens] 1249 0.0
gi|153791282 nuclear RNA export factor 2B [Homo sapiens] 720 0.0
gi|14277694 nuclear RNA export factor 2 [Homo sapiens] 720 0.0
gi|13430854 nuclear RNA export factor 2 [Homo sapiens] 720 0.0
gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens] 686 0.0
gi|11545757 nuclear RNA export factor 3 [Homo sapiens] 504 e-143
gi|254039592 nuclear RNA export factor 5 [Homo sapiens] 405 e-113
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 49 2e-05
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 43 8e-04
gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens] 40 0.006
gi|11321571 slit homolog 3 [Homo sapiens] 40 0.006
gi|218931217 leucine rich repeat containing 61 [Homo sapiens] 40 0.006
gi|13027616 leucine rich repeat containing 61 [Homo sapiens] 40 0.006
gi|15529980 leucine rich repeat containing 46 [Homo sapiens] 39 0.011
gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens] 39 0.019
gi|20302168 toll-like receptor 8 [Homo sapiens] 38 0.024
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 38 0.024
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 38 0.024
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 38 0.032
gi|194239701 tubulin folding cofactor E-like [Homo sapiens] 37 0.054
gi|194239699 tubulin folding cofactor E-like [Homo sapiens] 37 0.054
gi|24308207 leucine rich repeat containing 47 [Homo sapiens] 37 0.070
gi|164607156 axonemal dynein light chain 1 [Homo sapiens] 37 0.070
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 36 0.12
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 36 0.12
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 36 0.12
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 35 0.20
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 35 0.20
gi|41406097 dishevelled 3 [Homo sapiens] 34 0.35
gi|16904383 leucine rich repeat containing 7 [Homo sapiens] 34 0.35
>gi|15487670 nuclear RNA export factor 1 isoform 1 [Homo sapiens]
Length = 619
Score = 1249 bits (3232), Expect = 0.0
Identities = 619/619 (100%), Positives = 619/619 (100%)
Query: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA
Sbjct: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
Query: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF 120
MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF
Sbjct: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF 120
Query: 121 KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL 180
KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL
Sbjct: 121 KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL 180
Query: 181 DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA 240
DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA
Sbjct: 181 DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA 240
Query: 241 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 300
QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG
Sbjct: 241 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 300
Query: 301 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPI 360
NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPI
Sbjct: 301 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPI 360
Query: 361 AFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI 420
AFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI
Sbjct: 361 AFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI 420
Query: 421 PFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFV 480
PFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFV
Sbjct: 421 PFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFV 480
Query: 481 VDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS 540
VDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS
Sbjct: 481 VDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS 540
Query: 541 SEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA 600
SEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA
Sbjct: 541 SEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA 600
Query: 601 QAFTHLKAKGEIPEVAFMK 619
QAFTHLKAKGEIPEVAFMK
Sbjct: 601 QAFTHLKAKGEIPEVAFMK 619
>gi|153791282 nuclear RNA export factor 2B [Homo sapiens]
Length = 626
Score = 720 bits (1858), Expect = 0.0
Identities = 358/598 (59%), Positives = 452/598 (75%), Gaps = 1/598 (0%)
Query: 20 QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79
Q +KKG FR + + + GG S +E+DG V M D ++R+ PY+ R
Sbjct: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
Query: 80 NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139
RR WH D I +T R+R PPER + +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 86 ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
Query: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199
QS CS FTP++FHY RA FFV+DAS ASALK V+YKI D EN++I I +N S P++
Sbjct: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Query: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259
+ N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
Query: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S EL K+KGLKLEE
Sbjct: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
Query: 320 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFG 379
LWL+GN LC TF DQS Y+SAIR+ FPKLLRLDG EL P+ D+++ T+ PCK ++ G
Sbjct: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
Query: 380 TENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDS 439
+E LK LVL FLQQYY+IYDSGDRQGLL AYHD AC SL+IPF P++ A SSL +YF+DS
Sbjct: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
Query: 440 RNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVF 499
RN+K LKDP L+ LL+ T+ ++V L+ LPKTQHD++S +VD+ QT +LCFSVNGVF
Sbjct: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
Query: 500 KEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSP 559
KEV+G+S+ S+ AFTRTFIA P S+S LCIVNDELFVR+AS +E Q AF++P T SSS
Sbjct: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
Query: 560 VPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAF 617
P+LS EQQEM+QAFS QSGM LEWSQKCLQDN W+YTR+ QAFT L+ +G+IP AF
Sbjct: 565 EPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
>gi|14277694 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 720 bits (1858), Expect = 0.0
Identities = 358/598 (59%), Positives = 452/598 (75%), Gaps = 1/598 (0%)
Query: 20 QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79
Q +KKG FR + + + GG S +E+DG V M D ++R+ PY+ R
Sbjct: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
Query: 80 NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139
RR WH D I +T R+R PPER + +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 86 ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
Query: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199
QS CS FTP++FHY RA FFV+DAS ASALK V+YKI D EN++I I +N S P++
Sbjct: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Query: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259
+ N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
Query: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S EL K+KGLKLEE
Sbjct: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
Query: 320 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFG 379
LWL+GN LC TF DQS Y+SAIR+ FPKLLRLDG EL P+ D+++ T+ PCK ++ G
Sbjct: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
Query: 380 TENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDS 439
+E LK LVL FLQQYY+IYDSGDRQGLL AYHD AC SL+IPF P++ A SSL +YF+DS
Sbjct: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
Query: 440 RNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVF 499
RN+K LKDP L+ LL+ T+ ++V L+ LPKTQHD++S +VD+ QT +LCFSVNGVF
Sbjct: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
Query: 500 KEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSP 559
KEV+G+S+ S+ AFTRTFIA P S+S LCIVNDELFVR+AS +E Q AF++P T SSS
Sbjct: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
Query: 560 VPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAF 617
P+LS EQQEM+QAFS QSGM LEWSQKCLQDN W+YTR+ QAFT L+ +G+IP AF
Sbjct: 565 EPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
>gi|13430854 nuclear RNA export factor 2 [Homo sapiens]
Length = 626
Score = 720 bits (1858), Expect = 0.0
Identities = 358/598 (59%), Positives = 452/598 (75%), Gaps = 1/598 (0%)
Query: 20 QRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRP 79
Q +KKG FR + + + GG S +E+DG V M D ++R+ PY+ R
Sbjct: 26 QGRKKGGSSFRDNFDKRSCHYEHGGYERPPSHCQENDGSVEMRDVHKDQQLRHTPYSIRC 85
Query: 80 NRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMI 139
RR WH D I +T R+R PPER + +QDG ++NWFK+TIPYG KYDKAWL++ I
Sbjct: 86 ERRMK-WHSEDEIRITTWRNRKPPERKMSQNTQDGYTRNWFKVTIPYGIKYDKAWLMNSI 144
Query: 140 QSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHT 199
QS CS FTP++FHY RA FFV+DAS ASALK V+YKI D EN++I I +N S P++
Sbjct: 145 QSHCSDRFTPVDFHYVRNRACFFVQDASAASALKDVSYKIYDDENQKICIFVNHSTAPYS 204
Query: 200 ILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRI 259
+ N+LKP Q+E LKL M+KRY+ SQQALDL+ LR DPDL+ ++ID++LNRR+CMAATL+I
Sbjct: 205 VKNKLKPGQMEMLKLTMNKRYNVSQQALDLQNLRFDPDLMGRDIDIILNRRNCMAATLKI 264
Query: 260 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
IE N PELLSLNL NN+LY+LD +S I +KAP +K LNLS N+L+S EL K+KGLKLEE
Sbjct: 265 IERNFPELLSLNLCNNKLYQLDGLSDITEKAPKVKTLNLSKNKLESAWELGKVKGLKLEE 324
Query: 320 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFG 379
LWL+GN LC TF DQS Y+SAIR+ FPKLLRLDG EL P+ D+++ T+ PCK ++ G
Sbjct: 325 LWLEGNPLCSTFSDQSAYVSAIRDCFPKLLRLDGRELSAPVIVDIDSSETMKPCKENFTG 384
Query: 380 TENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDS 439
+E LK LVL FLQQYY+IYDSGDRQGLL AYHD AC SL+IPF P++ A SSL +YF+DS
Sbjct: 385 SETLKHLVLQFLQQYYSIYDSGDRQGLLGAYHDEACFSLAIPFDPKDSAPSSLCKYFEDS 444
Query: 440 RNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVF 499
RN+K LKDP L+ LL+ T+ ++V L+ LPKTQHD++S +VD+ QT +LCFSVNGVF
Sbjct: 445 RNMKTLKDPYLKGELLRRTKRDIVDSLSALPKTQHDLSSILVDVWCQTERMLCFSVNGVF 504
Query: 500 KEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSP 559
KEV+G+S+ S+ AFTRTFIA P S+S LCIVNDELFVR+AS +E Q AF++P T SSS
Sbjct: 505 KEVEGQSQGSVLAFTRTFIATPGSSSSLCIVNDELFVRDASPQETQSAFSIPVSTLSSSS 564
Query: 560 VPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHLKAKGEIPEVAF 617
P+LS EQQEM+QAFS QSGM LEWSQKCLQDN W+YTR+ QAFT L+ +G+IP AF
Sbjct: 565 EPSLSQEQQEMVQAFSAQSGMKLEWSQKCLQDNEWNYTRAGQAFTMLQTEGKIPAEAF 622
>gi|125625324 nuclear RNA export factor 1 isoform 2 [Homo sapiens]
Length = 356
Score = 686 bits (1770), Expect = 0.0
Identities = 338/341 (99%), Positives = 340/341 (99%)
Query: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA
Sbjct: 1 MADEGKSYSEHDDERVNFPQRKKKGRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVA 60
Query: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF 120
MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF
Sbjct: 61 MSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRRDRAPPERGGAGTSQDGTSKNWF 120
Query: 121 KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL 180
KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL
Sbjct: 121 KITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKIL 180
Query: 181 DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA 240
DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA
Sbjct: 181 DRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA 240
Query: 241 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 300
QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG
Sbjct: 241 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 300
Query: 301 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 341
NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI ++
Sbjct: 301 NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIRSV 341
>gi|11545757 nuclear RNA export factor 3 [Homo sapiens]
Length = 531
Score = 504 bits (1299), Expect = e-143
Identities = 270/533 (50%), Positives = 348/533 (65%), Gaps = 36/533 (6%)
Query: 39 RSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGDTWHDRDRIHVTVRR 98
RS G+ SS ++ DGD AM A VRY PYT P R ++ +D+ HV + R
Sbjct: 33 RSEPVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMER 92
Query: 99 DRAPPERGGAGTSQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTR 158
++ PPER G DGT +WFKIT+P+G KY++ WLL++IQ++CSVPF P+EFHYEN
Sbjct: 93 EQKPPERRMEGNMPDGTLGSWFKITVPFGIKYNEKWLLNLIQNECSVPFVPVEFHYENMH 152
Query: 159 AQFFVEDASTASALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSK 218
A FFVE+AS A ALK V+ KI D +N +ISI +N + PH + ELK E+VEQ+KL M++
Sbjct: 153 ASFFVENASIAYALKNVSGKIWDEDNEKISIFVNPAGIPHFVHRELKSEKVEQIKLAMNQ 212
Query: 219 RYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLY 278
+ D SQ+ALD++ L PD+V ++ + N R CMAA+L + EENIP ++S
Sbjct: 213 QCDVSQEALDIQRLPFYPDMVNRDTKMASNPRKCMAASLDVHEENIPTVMSAG------- 265
Query: 279 RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 338
E+DK KG++ E D + +C TF D S+ I
Sbjct: 266 -----------------------------EMDKWKGIEPGEKCADRSPVCTTFSDTSSNI 296
Query: 339 SAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIY 398
++I E FPKLL LDG + P EA LP CKGS+FG+E LK+LVL FLQQYY IY
Sbjct: 297 NSILELFPKLLCLDGQQSPRATLCGTEAHKRLPTCKGSFFGSEMLKNLVLQFLQQYYLIY 356
Query: 399 DSGDRQGLLDAYHDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHT 458
DSGDRQGLL AYHD AC SLSIPF P++ A SS ++FKDSRN+K LKDP LR LLKHT
Sbjct: 357 DSGDRQGLLSAYHDEACFSLSIPFNPEDSAPSSFCKFFKDSRNIKILKDPYLRGELLKHT 416
Query: 459 RLNVVAFLNELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFI 518
+L++V L+ LPKTQHD++SF+VD+ QT +LCFSVNGVFKEV+G+S+ S+ AFTRTFI
Sbjct: 417 KLDIVDSLSALPKTQHDLSSFLVDMWYQTEWMLCFSVNGVFKEVEGQSQGSVLAFTRTFI 476
Query: 519 AVPASNSGLCIVNDELFVRNASSEEIQRAFAMPAPTPSSSPVPTLSPEQQEML 571
A P S+S LCIVND+LFVR+ S + Q A PT SS VP S EQQ+ML
Sbjct: 477 ATPGSSSSLCIVNDKLFVRDTSHQGTQSALFTLVPTAFSSSVPAFSQEQQKML 529
>gi|254039592 nuclear RNA export factor 5 [Homo sapiens]
Length = 365
Score = 405 bits (1040), Expect = e-113
Identities = 215/402 (53%), Positives = 272/402 (67%), Gaps = 44/402 (10%)
Query: 111 SQDGTSKNWFKITIPYGRKYDKAWLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTAS 170
+QD + WFK+TIPYG KYDKAWL++ IQS CSVPFTP++FHY RA FFV+ AS AS
Sbjct: 5 TQDENMRKWFKVTIPYGIKYDKAWLMNSIQSNCSVPFTPVDFHYIRNRACFFVQVASAAS 64
Query: 171 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLK 230
ALK V+YKI D EN++I I ++ P+++ N+LKP Q+E LKL M+KRY+ SQQALDL+
Sbjct: 65 ALKDVSYKIYDDENQKICIFVSHFTAPYSVKNKLKPGQMEMLKLTMNKRYNVSQQALDLQ 124
Query: 231 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 290
LR DPDL+ ++ID++LNRR+CMAATL+I E N PELLSLNL NN+LY+LD +S I +KA
Sbjct: 125 NLRFDPDLMGRDIDIILNRRNCMAATLKITERNFPELLSLNLCNNKLYQLDGLSDITEKA 184
Query: 291 PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLR 350
P +K LNLS N+L+S EL K+KGLKLEELWL+GN LC TF DQS Y+SAIR+ FPKLLR
Sbjct: 185 PKVKTLNLSKNKLESAWELGKVKGLKLEELWLEGNPLCSTFSDQSAYVSAIRDCFPKLLR 244
Query: 351 LDGHELPPPIAFDVEAPTTLPPCKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAY 410
LDG EL P+ D+++ T+ PCK ++ G+E LK LVL FLQQ
Sbjct: 245 LDGRELSAPVIVDIDSSETMKPCKENFTGSETLKHLVLQFLQQ----------------- 287
Query: 411 HDGACCSLSIPFIPQNPARSSLAEYFKDSRNVKKLKDPTLRFRLLKHTRL-NVVAFLNEL 469
S+L +YFKDSRN+K LKDP L+ +LLKHT+ V L+ L
Sbjct: 288 -------------------SNLCKYFKDSRNIKILKDPYLQRKLLKHTKCPRNVDSLSAL 328
Query: 470 PKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLR 511
P+TQHD S +VD+ QT VN F G SLR
Sbjct: 329 PETQHDFTSILVDMWYQT-------VNTCFLPRAGPESQSLR 363
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 48.5 bits (114), Expect = 2e-05
Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 323
+P+L L LS NR++ DM + +K PNL LNLSGN+LK L+ +K KLE L
Sbjct: 63 LPKLKKLELSENRIFGGLDM--LAEKLPNLTHLNLSGNKLKDISTLEPLK--KLECL--- 115
Query: 324 GNSLCDTFRDQSTYISAIRER----FPKLLRLDGHELPPPIAFDVEA 366
D F + T ++ RE P+L LDG++ A D +A
Sbjct: 116 --KSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDA 160
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 43.1 bits (100), Expect = 8e-04
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 16/111 (14%)
Query: 263 NIPEL---LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 319
N+P+L L LS+NR+ + + +K PNL LNLSGN++K ++ +K KLE
Sbjct: 59 NLPKLNKLKKLELSDNRVS--GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK--KLEN 114
Query: 320 LWLDGNSLCDTFRDQSTYISAIRER----FPKLLRLDGHELPPPIAFDVEA 366
L D F + T ++ RE P+L LDG++ A D +A
Sbjct: 115 L-----KSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDRDDKEAPDSDA 160
Score = 32.0 bits (71), Expect = 1.7
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 25/146 (17%)
Query: 198 HTILNELKPEQVEQLKLIMSKRYDGSQQALDLK------------GLRSDPDLVAQN--- 242
H L P V++L L S+ +G + L + GL S +L N
Sbjct: 8 HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLK 67
Query: 243 -IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI--VQKAPNLKILNLS 299
+++ NR ++ L ++ E P L LNLS N ++ D+S+I ++K NLK L+L
Sbjct: 68 KLELSDNR---VSGGLEVLAEKCPNLTHLNLSGN---KIKDLSTIEPLKKLENLKSLDLF 121
Query: 300 GNELKSEREL-DKIKGLKLEELWLDG 324
E+ + + + + L + +LDG
Sbjct: 122 NCEVTNLNDYRENVFKLLPQLTYLDG 147
>gi|239745256 PREDICTED: similar to hCG1791241 [Homo sapiens]
Length = 450
Score = 40.0 bits (92), Expect = 0.006
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 323
+P+L LS NR++ +MS+ +K PNL LNLSG +LK L+ +K KLE L
Sbjct: 83 LPKLKKFVLSENRIFGGLNMSA--EKLPNLTHLNLSGKKLKDISTLEPLK--KLECLKSL 138
Query: 324 GNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEAPTTLPPCKGSYFGTENL 383
C+ + + Y ++ + P+L LD ++ A D +A P G + T N
Sbjct: 139 DLFNCEVI-NLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDAQLLADPW-GKEYHTNNA 196
Query: 384 KSLV 387
L+
Sbjct: 197 PLLL 200
>gi|11321571 slit homolog 3 [Homo sapiens]
Length = 1523
Score = 40.0 bits (92), Expect = 0.006
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 252 CMAATLRIIEENIPELLS-LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 310
C L I ++PE ++ L L++N + L+ + I +K PNL+ +NLS N++K RE
Sbjct: 518 CSNQKLVRIPSHLPEYVTDLRLNDNEVSVLE-ATGIFKKLPNLRKINLSNNKIKEVREGA 576
Query: 311 KIKGLKLEELWLDGNSL 327
++EL L GN L
Sbjct: 577 FDGAASVQELMLTGNQL 593
>gi|218931217 leucine rich repeat containing 61 [Homo sapiens]
Length = 259
Score = 40.0 bits (92), Expect = 0.006
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELW 321
++ +L LN+SNNRL L+ +++ NL+ LN +GN L + +L + GL LE L
Sbjct: 73 SLRQLAVLNVSNNRLTGLEPLAT----CENLQSLNAAGNLLATPGQLQCLAGLPCLEYLR 128
Query: 322 LD------GNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 356
L N LC +Y +A+RE P L +DG +
Sbjct: 129 LRDPLARLSNPLC----ANPSYWAAVRELLPGLKVIDGERV 165
>gi|13027616 leucine rich repeat containing 61 [Homo sapiens]
Length = 259
Score = 40.0 bits (92), Expect = 0.006
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELW 321
++ +L LN+SNNRL L+ +++ NL+ LN +GN L + +L + GL LE L
Sbjct: 73 SLRQLAVLNVSNNRLTGLEPLAT----CENLQSLNAAGNLLATPGQLQCLAGLPCLEYLR 128
Query: 322 LD------GNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 356
L N LC +Y +A+RE P L +DG +
Sbjct: 129 LRDPLARLSNPLC----ANPSYWAAVRELLPGLKVIDGERV 165
>gi|15529980 leucine rich repeat containing 46 [Homo sapiens]
Length = 321
Score = 39.3 bits (90), Expect = 0.011
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 28/112 (25%)
Query: 262 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL------------ 309
E + L SL L N++ ++++++ I P+L+ L+L+GN+++ L
Sbjct: 63 EGLQNLHSLYLQGNKIQQIENLACI----PSLRFLSLAGNQIRQVENLLDLPCLQFLDLS 118
Query: 310 -DKIKGLKLEE-------LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 353
+ I+ LKL+E L L GNS +Q Y + E P LL LDG
Sbjct: 119 ENLIETLKLDEFPQSLLILNLSGNSC----TNQDGYRELVTEALPLLLDLDG 166
>gi|153791330 leucine rich repeat neuronal 1 [Homo sapiens]
Length = 716
Score = 38.5 bits (88), Expect = 0.019
Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 211 QLKLIMSKRYDGSQQALDLKGLRSDP--DLVAQNIDVVLNRRSCMAATLRIIE------E 262
+LK+I S+ +D + L++ + +P ++ N + N RS + A + + +
Sbjct: 178 KLKVIDSRWFDSTPN-LEILMIGENPVIGILDMNFKPLANLRSLVLAGMYLTDIPGNALV 236
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 322
+ L SL+ +N+L ++ ++ +QK PNLK L+L+ N + +E D L+L+EL +
Sbjct: 237 GLDSLESLSFYDNKLVKVPQLA--LQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI 294
Query: 323 D 323
+
Sbjct: 295 N 295
>gi|20302168 toll-like receptor 8 [Homo sapiens]
Length = 1041
Score = 38.1 bits (87), Expect = 0.024
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 5/150 (3%)
Query: 206 PEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIP 265
P Q E L I + A L G + +D+ NR A+ + E +
Sbjct: 498 PNQFENLPDIACLNLSANSNAQVLSGTEFSAIPHVKYLDLTNNRLDFDNASA-LTELSDL 556
Query: 266 ELLSLNLSNNRLYRLDDMS---SIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 322
E+L L+ N+ +R+ ++ +Q NLK+LNLS N + + + ++ L EL
Sbjct: 557 EVLDLSY-NSHYFRIAGVTHHLEFIQNFTNLKVLNLSHNNIYTLTDKYNLESKSLVELVF 615
Query: 323 DGNSLCDTFRDQSTYISAIRERFPKLLRLD 352
GN L + D +I + L RLD
Sbjct: 616 SGNRLDILWNDDDNRYISIFKGLKNLTRLD 645
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 38.1 bits (87), Expect = 0.024
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 323
+P+L LS NR++ +MS+ +K PNL LNLSG +LK L+ +K KLE L
Sbjct: 83 LPKLKKFVLSENRIFGGLNMSA--EKLPNLTHLNLSGKKLKDISTLEPLK--KLECLKSL 138
Query: 324 GNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEA 366
C+ + + Y ++ + P+L LD ++ A D +A
Sbjct: 139 DLFNCEVI-NLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA 180
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 38.1 bits (87), Expect = 0.024
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLD 323
+P+L LS NR++ +MS+ +K PNL LNLSG +LK L+ +K KLE L
Sbjct: 83 LPKLKKFVLSENRIFGGLNMSA--EKLPNLTHLNLSGKKLKDISTLEPLK--KLECLKSL 138
Query: 324 GNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPIAFDVEA 366
C+ + + Y ++ + P+L LD ++ A D +A
Sbjct: 139 DLFNCEVI-NLNDYQESVFKLLPQLTCLDTYDPEDQEAPDSDA 180
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 37.7 bits (86), Expect = 0.032
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 33/137 (24%)
Query: 244 DVVLNRRSCMAATLRIIEENIPELLSLNLSN------------NRLYRLDDMSSIV---- 287
++VL+ C+ + + + EL L+++N N+L +L+ +I+
Sbjct: 21 ELVLDNCLCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGGL 80
Query: 288 ----QKAPNLKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYISAIR 342
+K PNL LNLSGN++K ++ ++ LK L+ L D F + T + R
Sbjct: 81 EVLAEKCPNLTYLNLSGNKIKDLSTVEALQNLKNLKSL--------DLFNCEITNLEDYR 132
Query: 343 ERFPKLLR----LDGHE 355
E +LL+ LDG +
Sbjct: 133 ESIFELLQQITYLDGFD 149
>gi|194239701 tubulin folding cofactor E-like [Homo sapiens]
Length = 424
Score = 37.0 bits (84), Expect = 0.054
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 265 PELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 322
P L +L L+NN L +++ S+ + PNL+ ++L + L+S ++DK+ KLEE+ L
Sbjct: 200 PSLDTLVLANNHLNAIEEPDDSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRL 259
Query: 323 DGNSLCDTFRDQSTYISAIRERFPKLLRLDG 353
G L + + + R P + +L+G
Sbjct: 260 LGIPLLQPYTTEERR-KLVIARLPSVSKLNG 289
Score = 33.1 bits (74), Expect = 0.78
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 242 NIDVVLNRRSC---MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 298
N+ VL SC A + I + L+LS+N+L ++S IV P L+ LNL
Sbjct: 48 NLPSVLVLNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNL 107
Query: 299 SGNEL 303
S N L
Sbjct: 108 SSNPL 112
>gi|194239699 tubulin folding cofactor E-like [Homo sapiens]
Length = 424
Score = 37.0 bits (84), Expect = 0.054
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 265 PELLSLNLSNNRLYRLDDMS-SIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWL 322
P L +L L+NN L +++ S+ + PNL+ ++L + L+S ++DK+ KLEE+ L
Sbjct: 200 PSLDTLVLANNHLNAIEEPDDSLARLFPNLRSISLHKSGLQSWEDIDKLNSFPKLEEVRL 259
Query: 323 DGNSLCDTFRDQSTYISAIRERFPKLLRLDG 353
G L + + + R P + +L+G
Sbjct: 260 LGIPLLQPYTTEERR-KLVIARLPSVSKLNG 289
Score = 33.1 bits (74), Expect = 0.78
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 242 NIDVVLNRRSC---MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL 298
N+ VL SC A + I + L+LS+N+L ++S IV P L+ LNL
Sbjct: 48 NLPSVLVLNSCGITCAGDEKEIAAFCAHVSELDLSDNKLEDWHEVSKIVSNVPQLEFLNL 107
Query: 299 SGNEL 303
S N L
Sbjct: 108 SSNPL 112
>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
Length = 583
Score = 36.6 bits (83), Expect = 0.070
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 264 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 305
+P+L SLNLS NRL L + + + AP L+ LNL+GN L S
Sbjct: 128 LPQLQSLNLSGNRLRELP--ADLARCAPRLQSLNLTGNCLDS 167
Score = 30.4 bits (67), Expect = 5.0
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 320
++ L +L+LSNN+L ++ + + P LK +N GN+L+ +R + G + +
Sbjct: 200 HLASLKTLDLSNNQL---SEIPAELADCPKLKEINFRGNKLRDKRLEKMVSGCQTRSI 254
>gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
Length = 190
Score = 36.6 bits (83), Expect = 0.070
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 293 LKILNLSGNELKSERELDKIKGLK-LEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL 351
LKIL +S N +K E K+ L LE+L GN L + ++ +I +R PKL +L
Sbjct: 117 LKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEEATKRVPKLKKL 176
Query: 352 DG 353
DG
Sbjct: 177 DG 178
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 35.8 bits (81), Expect = 0.12
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
Query: 263 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK-LEELW 321
++ +L L LS+N + + + +K PNL LNLSGN++K ++ ++ LK L+ L
Sbjct: 14 SLNKLRKLELSDNIIS--GGLEVLAEKCPNLTYLNLSGNKIKDLSTVEALQNLKNLKSL- 70
Query: 322 LDGNSLCDTFRDQSTYISAIRERFPKLLR----LDGHE 355
D F + T + RE +LL+ LDG +
Sbjct: 71 -------DLFNCEITNLEDYRESIFELLQQITYLDGFD 101
Score = 31.6 bits (70), Expect = 2.3
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 257 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGL 315
L ++ E P L LNLS N++ L + ++ Q NLK L+L E+ + E + I L
Sbjct: 32 LEVLAEKCPNLTYLNLSGNKIKDLSTVEAL-QNLKNLKSLDLFNCEITNLEDYRESIFEL 90
Query: 316 KLEELWLDG 324
+ +LDG
Sbjct: 91 LQQITYLDG 99
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 35.8 bits (81), Expect = 0.12
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 262 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEEL 320
E++ L +L+L +N++ D +S ++ +L+ LNL GN + + EL K++ L KL L
Sbjct: 219 EDLSNLTTLHLRDNQI---DTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRAL 275
Query: 321 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 352
L L + D+++Y + P L RLD
Sbjct: 276 VL----LDNPCTDETSYRQEALVQMPYLERLD 303
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 35.8 bits (81), Expect = 0.12
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 262 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEEL 320
E++ L +L+L +N++ D +S ++ +L+ LNL GN + + EL K++ L KL L
Sbjct: 219 EDLSNLTTLHLRDNQI---DTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRAL 275
Query: 321 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 352
L L + D+++Y + P L RLD
Sbjct: 276 VL----LDNPCTDETSYRQEALVQMPYLERLD 303
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 35.0 bits (79), Expect = 0.20
Identities = 37/125 (29%), Positives = 49/125 (39%), Gaps = 26/125 (20%)
Query: 24 KGRGP--FRWKYGEGNRRS---GRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTR 78
KG GP G G+ RS GRG S +EE DG S R
Sbjct: 105 KGAGPPLAGTSRGRGSTRSRGRGRGDSCFYQRSIEEGDGAFGRS--------------PR 150
Query: 79 PNRRGDTWHDRD--RIHVTVRRD--RAPPERGGAGTSQD---GTSKNWFKITIPYGRKYD 131
+R +W DR R + RRD R E GGAG ++ S+NW + + +
Sbjct: 151 EIQRSQSWDDRGERRFEKSARRDGARCGFEEGGAGPRKEHARSDSENWRSLREEQEEEEE 210
Query: 132 KAWLL 136
+W L
Sbjct: 211 GSWRL 215
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 35.0 bits (79), Expect = 0.20
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 262 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLK 316
EN+ L LNL+ N + + + +K +L++LNL GN++ S +++ K+K L+
Sbjct: 166 ENMCNLQKLNLAGNEIEHIPVW--LGKKLKSLRVLNLKGNKISSLQDISKLKPLQ 218
Score = 29.6 bits (65), Expect = 8.6
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 16/70 (22%)
Query: 262 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-----------LKSERELD 310
+ + +L LNLS N++ +++ + ++ NL+ LNL+GNE LKS R L+
Sbjct: 144 DKLLKLRELNLSYNKISKIEGIENMC----NLQKLNLAGNEIEHIPVWLGKKLKSLRVLN 199
Query: 311 KIKGLKLEEL 320
+KG K+ L
Sbjct: 200 -LKGNKISSL 208
>gi|41406097 dishevelled 3 [Homo sapiens]
Length = 716
Score = 34.3 bits (77), Expect = 0.35
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 25 GRGPFRWKYGEGNRRSGRGGSGIRSSRLEEDDGDVAMSDAQDGPRVRYNPYTTRPNRRGD 84
G G ++ EG+R SG SG S R +E D D++ G + +TTR + RG
Sbjct: 561 GGGSASSQHSEGSRSSGSNRSG--SDRRKEKDPKAG--DSKSGGSGSESDHTTRSSLRGP 616
Query: 85 TWHDRDRIHVTVRRDRAPPERGGAGTSQ 112
R+RAP ER G S+
Sbjct: 617 -------------RERAPSERSGPAASE 631
>gi|16904383 leucine rich repeat containing 7 [Homo sapiens]
Length = 1537
Score = 34.3 bits (77), Expect = 0.35
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 255 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIK 313
A L + N L+ L + R L + + K L+ L+L NE E LD+I+
Sbjct: 148 AFLEFLPANFGRLVKLRILELRENHLKTLPKSMHKLAQLERLDLGNNEFGELPEVLDQIQ 207
Query: 314 GLKLEELWLDGNSL 327
L+ ELW+D N+L
Sbjct: 208 NLR--ELWMDNNAL 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,627,637
Number of Sequences: 37866
Number of extensions: 1158295
Number of successful extensions: 4910
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 4794
Number of HSP's gapped (non-prelim): 164
length of query: 619
length of database: 18,247,518
effective HSP length: 108
effective length of query: 511
effective length of database: 14,157,990
effective search space: 7234732890
effective search space used: 7234732890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.