Guide to the Human Genome
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Name: PHB2 Sequence: fasta or formatted (299aa) NCBI GI: 221307584
Description:

prohibitin 2 isoform 1

Referenced in:

Mitochondria
RB1 and Related Functions
Small RNAs in RNA Processing

Other entries for this name:
alt mRNA [299aa] prohibitin 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         32           2
 C cysteine            0.0          0           0
 D aspartate           3.7         11           2
 E glutamate           6.7         20           2
 F phenylalanine       3.3         10           2
 G glycine             6.4         19           2
 H histidine           0.7          2           1
 I isoleucine          7.0         21           2
 K lysine              6.4         19           2
 L leucine            11.0         33           3
 M methionine          1.7          5           1
 N asparagine          3.7         11           1
 P proline             3.3         10           1
 Q glutamine           7.4         22           2
 R arginine            8.0         24           2
 S serine              6.7         20           2
 T threonine           4.0         12           1
 V valine              6.4         19           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prohibitin 2 isoform 1 
PHB2                  1.000   prohibitin 2 isoform 2 
PHB                   0.426   prohibitin 
STOM                  0.037   stomatin isoform a 
STOML3                0.028   stomatin-like 3 isoform 2 
STOML3                0.028   stomatin-like 3 isoform 1 
ERLIN1                0.020   ER lipid raft associated 1 
ERLIN1                0.020   ER lipid raft associated 1 
LAMB1                 0.018   laminin, beta 1 precursor 
RAI14                 0.018   retinoic acid induced 14 isoform d 
RAI14                 0.018   retinoic acid induced 14 isoform c 
RAI14                 0.018   retinoic acid induced 14 isoform b 
RAI14                 0.018   retinoic acid induced 14 isoform a 
RAI14                 0.018   retinoic acid induced 14 isoform a 
RAI14                 0.018   retinoic acid induced 14 isoform a 
FLOT1                 0.018   flotillin 1 
ERLIN2                0.017   ER lipid raft associated 2 isoform 1 
CEP250                0.017   centrosomal protein 2 
SLMAP                 0.013   sarcolemma associated protein 
MYO5A                 0.013   myosin VA isoform 2 
MYO5A                 0.013   myosin VA isoform 1 
PLEC1                 0.013   plectin 1 isoform 11 
PLEC1                 0.013   plectin 1 isoform 10 
PLEC1                 0.013   plectin 1 isoform 8 
PLEC1                 0.013   plectin 1 isoform 7 
PLEC1                 0.013   plectin 1 isoform 6 
PLEC1                 0.013   plectin 1 isoform 3 
PLEC1                 0.013   plectin 1 isoform 2 
PLEC1                 0.013   plectin 1 isoform 1 
ARGLU1                0.013   arginine and glutamate rich 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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