Guide to the Human Genome
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Name: ZNF540 Sequence: fasta or formatted (660aa) NCBI GI: 22749241
Description:

zinc finger protein 540

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.0         13           1
 C cysteine            6.1         40           1
 D aspartate           2.6         17           1
 E glutamate           7.7         51           1
 F phenylalanine       4.7         31           2
 G glycine             6.8         45           1
 H histidine           6.7         44           1
 I isoleucine          4.5         30           2
 K lysine             13.6         90           2
 L leucine             6.5         43           2
 M methionine          0.8          5           1
 N asparagine          2.3         15           2
 P proline             2.9         19           1
 Q glutamine           5.0         33           2
 R arginine            6.5         43           2
 S serine              6.7         44           2
 T threonine           6.2         41           2
 V valine              4.2         28           2
 W tryptophan          0.3          2           1
 Y tyrosine            3.9         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 540 
ZNF780B               0.521   zinc finger protein 780B 
ZNF420                0.521   zinc finger protein 420 
ZNF546                0.513   zinc finger protein 546 
ZNF780A               0.500   zinc finger protein 780A isoform b 
ZNF780A               0.500   zinc finger protein 780A isoform b 
ZNF780A               0.497   zinc finger protein 780A isoform a 
ZNF470                0.496   zinc finger protein 470 
ZNF283                0.484   zinc finger protein 283 
ZNF30                 0.481   zinc finger protein 30 isoform b 
ZNF30                 0.478   zinc finger protein 30 isoform a 
ZNF30                 0.478   zinc finger protein 30 isoform a 
ZNF184                0.471   zinc finger protein 184 
ZNF607                0.464   zinc finger protein 607 
ZNF595                0.459   zinc finger protein 595 
ZNF571                0.459   zinc finger protein 571 
ZNF429                0.459   zinc finger protein 429 
ZNF624                0.456   zinc finger protein 624 
ZNF160                0.453   zinc finger protein 160 
ZNF160                0.453   zinc finger protein 160 
ZNF160                0.453   zinc finger protein 160 
ZNF665                0.451   zinc finger protein 665 
ZNF493                0.446   zinc finger protein 493 isoform 3 
ZNF726                0.445   PREDICTED: zinc finger protein 726 
ZNF726                0.445   PREDICTED: zinc finger protein 726 
ZNF726                0.445   PREDICTED: zinc finger protein 726 
ZNF208                0.445   zinc finger protein 208 
ZNF93                 0.441   zinc finger protein 93 
ZFP14                 0.440   zinc finger protein 14-like 
ZNF471                0.438   zinc finger protein 471 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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