Search of human proteins with 154240692

Search of human proteins with 154240692

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154240692 RALY RNA binding protein-like isoform 1 [Homo
sapiens]
         (304 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]   607   e-174
gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]   582   e-166
gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]   582   e-166
gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]   582   e-166
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ...   283   1e-76
gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a...   271   4e-73
gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a...   271   4e-73
gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b...   268   3e-72
gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b...   268   3e-72
gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Ho...   245   3e-65
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated...   244   7e-65
gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Hom...   241   6e-64
gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein ...   237   1e-62
gi|239752620 PREDICTED: similar to heterogeneous nuclear ribonuc...   237   1e-62
gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Hom...   237   1e-62
gi|5454064 RNA binding motif protein 14 [Homo sapiens]                 65   1e-10
gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3...    52   8e-07
gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1...    52   8e-07
gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4...    52   8e-07
gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [...    52   8e-07
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom...    47   2e-05
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo...    47   2e-05
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo...    47   2e-05
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa...    45   8e-05
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap...    45   8e-05
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]         45   8e-05
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-...    45   1e-04
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ...    45   1e-04
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]      45   1e-04
gi|188219593 TIA1 protein isoform 1 [Homo sapiens]                     44   1e-04

>gi|154240692 RALY RNA binding protein-like isoform 1 [Homo sapiens]
          Length = 304

 Score =  607 bits (1565), Expect = e-174
 Identities = 304/304 (100%), Positives = 304/304 (100%)

Query: 1   MSKRRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGK 60
           MSKRRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGK
Sbjct: 1   MSKRRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGK 60

Query: 61  IVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS 120
           IVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS
Sbjct: 61  IVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS 120

Query: 121 ALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTR 180
           ALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTR
Sbjct: 121 ALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTR 180

Query: 181 RGKGVFSMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAE 240
           RGKGVFSMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAE
Sbjct: 181 RGKGVFSMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAE 240

Query: 241 AEAQKKQLEESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELF 300
           AEAQKKQLEESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELF
Sbjct: 241 AEAQKKQLEESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELF 300

Query: 301 LQIK 304
           LQIK
Sbjct: 301 LQIK 304


>gi|154240738 RALY RNA binding protein-like isoform 2 [Homo sapiens]
          Length = 291

 Score =  582 bits (1500), Expect = e-166
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 14  MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73
           MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60

Query: 74  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133
           QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120

Query: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 193
           VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180

Query: 194 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 253
           STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240

Query: 254 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
           LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291


>gi|154240740 RALY RNA binding protein-like isoform 2 [Homo sapiens]
          Length = 291

 Score =  582 bits (1500), Expect = e-166
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 14  MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73
           MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60

Query: 74  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133
           QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120

Query: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 193
           VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180

Query: 194 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 253
           STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240

Query: 254 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
           LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291


>gi|154240712 RALY RNA binding protein-like isoform 2 [Homo sapiens]
          Length = 291

 Score =  582 bits (1500), Expect = e-166
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 14  MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73
           MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
Sbjct: 1   MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 60

Query: 74  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133
           QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
Sbjct: 61  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 120

Query: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 193
           VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
Sbjct: 121 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR 180

Query: 194 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 253
           STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
Sbjct: 181 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV 240

Query: 254 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
           LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
Sbjct: 241 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 291


>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
           with lethal yellow) long isoform [Homo sapiens]
          Length = 306

 Score =  283 bits (725), Expect = 1e-76
 Identities = 153/236 (64%), Positives = 175/236 (74%), Gaps = 15/236 (6%)

Query: 14  MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73
           M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1   MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60

Query: 74  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133
           QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR  SA+Y          
Sbjct: 61  QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109

Query: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 192
             GY+FDYDYYRDDFY+RLFDY GR+ P P    +P+KRPRV V   RR K    +K  +
Sbjct: 110 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 168

Query: 193 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 246
           RSTA  + S   KLKS ELQ IK ELTQIK+ ID+LL RLE+I  +QKA  + +KK
Sbjct: 169 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 224


>gi|117190192 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score =  271 bits (694), Expect = 4e-73
 Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)

Query: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
           SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3   SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62

Query: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 137
           ARAAVAGE+ R+IAGQ LDIN+A EPK  R K G KR  + +Y   ++ P    L    +
Sbjct: 63  ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122

Query: 138 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 194
             DYD+ R D+Y+R++ Y  RVPPPP   RAV+P KR RV+  T+RRGK  F+ K G R 
Sbjct: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181

Query: 195 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 254
           +   S   KLK D+LQ IKKELTQIK K+DSLL  LEKIEK+Q  +A   K    E    
Sbjct: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234

Query: 255 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
            +E+  S +    T  +  +EGG D D  E  D +++D +ED G +    IK
Sbjct: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284


>gi|117189975 heterogeneous nuclear ribonucleoprotein C isoform a
           [Homo sapiens]
          Length = 306

 Score =  271 bits (694), Expect = 4e-73
 Identities = 156/292 (53%), Positives = 196/292 (67%), Gaps = 18/292 (6%)

Query: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
           SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3   SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62

Query: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPF---LSVGGY 137
           ARAAVAGE+ R+IAGQ LDIN+A EPK  R K G KR  + +Y   ++ P    L    +
Sbjct: 63  ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSSSF 122

Query: 138 VFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRS 194
             DYD+ R D+Y+R++ Y  RVPPPP   RAV+P KR RV+  T+RRGK  F+ K G R 
Sbjct: 123 DLDYDFQR-DYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRG 181

Query: 195 TASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVL 254
           +   S   KLK D+LQ IKKELTQIK K+DSLL  LEKIEK+Q  +A   K    E    
Sbjct: 182 S---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE---- 234

Query: 255 IQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
            +E+  S +    T  +  +EGG D D  E  D +++D +ED G +    IK
Sbjct: 235 -EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 284


>gi|117190254 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score =  268 bits (686), Expect = 3e-72
 Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)

Query: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
           SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3   SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62

Query: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
           ARAAVAGE+ R+IAGQ LDIN+A EPK  R K G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110

Query: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
            DY ++ D+Y+R++ Y  RVPPPP   RAV+P KR RV+  T+RRGK  F+ K G R + 
Sbjct: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169

Query: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 256
             S   KLK D+LQ IKKELTQIK K+DSLL  LEKIEK+Q  +A   K    E     +
Sbjct: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222

Query: 257 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
           E+  S +    T  +  +EGG D D  E  D +++D +ED G +    IK
Sbjct: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271


>gi|117190174 heterogeneous nuclear ribonucleoprotein C isoform b
           [Homo sapiens]
          Length = 293

 Score =  268 bits (686), Expect = 3e-72
 Identities = 155/290 (53%), Positives = 193/290 (66%), Gaps = 27/290 (9%)

Query: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
           SNVTNK DP+S+NSRVFIGNLNT +VKK D+EAIFSKYGKIVGCSVHKG+AFVQY++ER+
Sbjct: 3   SNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERN 62

Query: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
           ARAAVAGE+ R+IAGQ LDIN+A EPK  R K G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY------------GSSFD 110

Query: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
            DY ++ D+Y+R++ Y  RVPPPP   RAV+P KR RV+  T+RRGK  F+ K G R + 
Sbjct: 111 LDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGS- 169

Query: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLVLIQ 256
             S   KLK D+LQ IKKELTQIK K+DSLL  LEKIEK+Q  +A   K    E     +
Sbjct: 170 --SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSE-----E 222

Query: 257 EECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
           E+  S +    T  +  +EGG D D  E  D +++D +ED G +    IK
Sbjct: 223 EQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK 271


>gi|61966711 heterogeneous nuclear ribonucleoprotein C-like 1 [Homo
           sapiens]
          Length = 293

 Score =  245 bits (626), Expect = 3e-65
 Identities = 144/289 (49%), Positives = 185/289 (64%), Gaps = 25/289 (8%)

Query: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
            DY ++ D+Y+ ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSKSGKRGS- 169

Query: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 255
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+Q K E E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223

Query: 256 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
           Q     +  +   +  +EGG + D  E  D +++D +ED G +    IK
Sbjct: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIK 271


>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
           with lethal yellow) short isoform [Homo sapiens]
          Length = 290

 Score =  244 bits (623), Expect = 7e-65
 Identities = 140/236 (59%), Positives = 160/236 (67%), Gaps = 31/236 (13%)

Query: 14  MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV 73
           M+ K Q SNVTNKNDPKSINSRVFIGNLNTA+VKK D+E IFSKYG++ GCSVHKGYAFV
Sbjct: 1   MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV 60

Query: 74  QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS 133
           QY +ERHARAAV GEN RV+AGQ LDINMAGEPKP RPK G KR  SA+Y          
Sbjct: 61  QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY---------- 109

Query: 134 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-PPRAVIPLKRPRVAVTTTRRGKGVFSMKGGS 192
                            RLFDY GR+ P P    +P+KRPRV V   RR K    +K  +
Sbjct: 110 -----------------RLFDYRGRLSPVPVPRAVPVKRPRVTVPLVRRVKTNVPVKLFA 152

Query: 193 RSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK 246
           RSTA  + S   KLKS ELQ IK ELTQIK+ ID+LL RLE+I  +QKA  + +KK
Sbjct: 153 RSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKK 208


>gi|211971067 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score =  241 bits (615), Expect = 6e-64
 Identities = 143/289 (49%), Positives = 182/289 (62%), Gaps = 25/289 (8%)

Query: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
           ARAAVAGE+ R+IA Q   IN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
            DY ++ D+Y+ ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169

Query: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 255
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+Q K E E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKSEEE---- 223

Query: 256 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK 304
           Q     +  +   +  +EGG + D  E  D +++D +ED G      IK
Sbjct: 224 QSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDDNEDQGDNQLHLIK 271


>gi|239758162 PREDICTED: heterogeneous nuclear ribonucleoprotein
           C-like [Homo sapiens]
          Length = 293

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169

Query: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 255
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223

Query: 256 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 301
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269


>gi|239752620 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein C-like [Homo sapiens]
          Length = 293

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169

Query: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 255
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223

Query: 256 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 301
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269


>gi|226052117 heterogeneous nuclear ribonucleoprotein C-like [Homo
           sapiens]
          Length = 293

 Score =  237 bits (604), Expect = 1e-62
 Identities = 141/286 (49%), Positives = 179/286 (62%), Gaps = 24/286 (8%)

Query: 21  SNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERH 80
           SNVTNK DP S+NSRVFIGNLNT +VKK D+EAIFSKYGKI GCSVHKG+AFVQY  E++
Sbjct: 3   SNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKN 62

Query: 81  ARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLSVGGYVFD 140
           ARAAVAGE+ R+IA Q +DIN+A EPK  R   G KR  + +Y            G  FD
Sbjct: 63  ARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY------------GSSFD 110

Query: 141 YDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMKGGSRSTA 196
            DY  + D+Y  ++ +  RVPPPP    AV+P KR R++  T+RRGK  F+ K G R + 
Sbjct: 111 LDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGS- 169

Query: 197 SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQLEESLVLI 255
             S   KLK D+LQ IK+ELTQIK K+DSLL  LEKIEK+  K   E +  + EE     
Sbjct: 170 --SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEE---- 223

Query: 256 QEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFL 301
           Q    S+      +  +EGG D   EE     ++D ++ G ++L L
Sbjct: 224 QTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLEL 269


>gi|5454064 RNA binding motif protein 14 [Homo sapiens]
          Length = 669

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 29/200 (14%)

Query: 23  VTNKNDPKSINS-RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHA 81
           V   + P+ +N+ ++F+GN++ A   + ++ ++F + G+++ C V K YAFV    E  A
Sbjct: 67  VVEMSRPRPLNTWKIFVGNVSAACTSQ-ELRSLFERRGRVIECDVVKDYAFVHMEKEADA 125

Query: 82  RAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEP------FLSVG 135
           +AA+A  N + + G+ +++ ++   K  +  PG    L+     ++K+P      F   G
Sbjct: 126 KAAIAQLNGKEVKGKRINVELS--TKGQKKGPG----LAVQSGDKTKKPGAGDTAFPGTG 179

Query: 136 GYVFDYDYYRDDFYNRL--FDYHGRVPPPP---RAVIPLKR---------PRVAVTTTRR 181
           G+   +D Y+  F N    FD   R P PP   R   PL+R         P  A   T R
Sbjct: 180 GFSATFD-YQQAFGNSTGGFDGQARQPTPPFFGRDRSPLRRSPPRASYVAPLTAQPATYR 238

Query: 182 GKGVFSMKGGSRSTASGSTG 201
            +   S+    R+  S S G
Sbjct: 239 AQPSVSLGAAYRAQPSASLG 258



 Score = 41.6 bits (96), Expect = 9e-04
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)

Query: 35  RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHA-RAAVAGENARVI 93
           ++F+GN++ A     ++ A+F+ YG ++ C+V K +AFV       A RA  A     + 
Sbjct: 2   KIFVGNVDGADTTPEELAALFAPYGTVMSCAVMKQFAFVHMRENAGALRAIEALHGHELR 61

Query: 94  AGQPLDINMAGEPKPYRPKPGN 115
            G+ L + M+      RP+P N
Sbjct: 62  PGRALVVEMS------RPRPLN 77


>gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3
           [Homo sapiens]
          Length = 535

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 62/258 (24%), Positives = 95/258 (36%), Gaps = 75/258 (29%)

Query: 4   RRRLKQGEPIMTGKTQT---SNVTNKNDPKSINSR--VFIGNLNTAIVKKVDIEAIFSKY 58
           RRRL  G+  + G   T   ++   + DP+ +     +F+ NL T + +++ +E  FS++
Sbjct: 208 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEI-LEKSFSEF 266

Query: 59  GKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKP---------- 108
           GK+      K YAFV +     A  A+   N + I G+ ++I +A  P            
Sbjct: 267 GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQ 326

Query: 109 -----------YRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDY-----YRDDFYNRL 152
                      Y P P    P+    R   +      GGY +  DY     Y DD+Y   
Sbjct: 327 ASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------GGYGYPPDYYGYEDYYDDYYG-- 378

Query: 153 FDYH---------------------------GRVPPPPRAVIPLKRPRVAVTTTRRGKGV 185
           +DYH                           GR  PPP        PR       RG+  
Sbjct: 379 YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPP--------PRGRGAPPPRGRAG 430

Query: 186 FSMKGGSRSTASGSTGSK 203
           +S +G       GS G +
Sbjct: 431 YSQRGAPLGPPRGSRGGR 448


>gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1
           [Homo sapiens]
          Length = 636

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 62/258 (24%), Positives = 95/258 (36%), Gaps = 75/258 (29%)

Query: 4   RRRLKQGEPIMTGKTQT---SNVTNKNDPKSINSR--VFIGNLNTAIVKKVDIEAIFSKY 58
           RRRL  G+  + G   T   ++   + DP+ +     +F+ NL T + +++ +E  FS++
Sbjct: 309 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEI-LEKSFSEF 367

Query: 59  GKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKP---------- 108
           GK+      K YAFV +     A  A+   N + I G+ ++I +A  P            
Sbjct: 368 GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQ 427

Query: 109 -----------YRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDY-----YRDDFYNRL 152
                      Y P P    P+    R   +      GGY +  DY     Y DD+Y   
Sbjct: 428 ASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------GGYGYPPDYYGYEDYYDDYYG-- 479

Query: 153 FDYH---------------------------GRVPPPPRAVIPLKRPRVAVTTTRRGKGV 185
           +DYH                           GR  PPP        PR       RG+  
Sbjct: 480 YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPP--------PRGRGAPPPRGRAG 531

Query: 186 FSMKGGSRSTASGSTGSK 203
           +S +G       GS G +
Sbjct: 532 YSQRGAPLGPPRGSRGGR 549


>gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4
           [Homo sapiens]
          Length = 532

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 62/258 (24%), Positives = 95/258 (36%), Gaps = 75/258 (29%)

Query: 4   RRRLKQGEPIMTGKTQT---SNVTNKNDPKSINSR--VFIGNLNTAIVKKVDIEAIFSKY 58
           RRRL  G+  + G   T   ++   + DP+ +     +F+ NL T + +++ +E  FS++
Sbjct: 205 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEI-LEKSFSEF 263

Query: 59  GKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKP---------- 108
           GK+      K YAFV +     A  A+   N + I G+ ++I +A  P            
Sbjct: 264 GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQ 323

Query: 109 -----------YRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDY-----YRDDFYNRL 152
                      Y P P    P+    R   +      GGY +  DY     Y DD+Y   
Sbjct: 324 ASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------GGYGYPPDYYGYEDYYDDYYG-- 375

Query: 153 FDYH---------------------------GRVPPPPRAVIPLKRPRVAVTTTRRGKGV 185
           +DYH                           GR  PPP        PR       RG+  
Sbjct: 376 YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPP--------PRGRGAPPPRGRAG 427

Query: 186 FSMKGGSRSTASGSTGSK 203
           +S +G       GS G +
Sbjct: 428 YSQRGAPLGPPRGSRGGR 445


>gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2
           [Homo sapiens]
          Length = 633

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 62/258 (24%), Positives = 95/258 (36%), Gaps = 75/258 (29%)

Query: 4   RRRLKQGEPIMTGKTQT---SNVTNKNDPKSINSR--VFIGNLNTAIVKKVDIEAIFSKY 58
           RRRL  G+  + G   T   ++   + DP+ +     +F+ NL T + +++ +E  FS++
Sbjct: 306 RRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEI-LEKSFSEF 364

Query: 59  GKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKP---------- 108
           GK+      K YAFV +     A  A+   N + I G+ ++I +A  P            
Sbjct: 365 GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQ 424

Query: 109 -----------YRPKPGNKRPLSALYRLESKEPFLSVGGYVFDYDY-----YRDDFYNRL 152
                      Y P P    P+    R   +      GGY +  DY     Y DD+Y   
Sbjct: 425 ASRSTAYEDYYYHPPPRMPPPIRGRGRGGGR------GGYGYPPDYYGYEDYYDDYYG-- 476

Query: 153 FDYH---------------------------GRVPPPPRAVIPLKRPRVAVTTTRRGKGV 185
           +DYH                           GR  PPP        PR       RG+  
Sbjct: 477 YDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPP--------PRGRGAPPPRGRAG 528

Query: 186 FSMKGGSRSTASGSTGSK 203
           +S +G       GS G +
Sbjct: 529 YSQRGAPLGPPRGSRGGR 546


>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
           sapiens]
          Length = 516

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 5   RRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGC 64
           R +K G P   G+ Q        + ++ N R+++ +++  +    DI+++F  +GKI  C
Sbjct: 155 RNIKVGRPSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDD-DIKSVFEAFGKIKSC 212

Query: 65  SV--------HKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEP 106
           ++        HKGY F++Y   + ++ AV+  N   + GQ L +  A  P
Sbjct: 213 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 262



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 31  SINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV--------HKGYAFVQYMSERHAR 82
           +I  RV++G++   + +   I   F+ +G I    +        HKG+AFV+Y     A+
Sbjct: 83  AIMCRVYVGSIYYELGEDT-IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQ 141

Query: 83  AAVAGENARVIAGQPLDI 100
            A+   N+ ++ G+ + +
Sbjct: 142 LALEQMNSVMLGGRNIKV 159


>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
           sapiens]
          Length = 542

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 5   RRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGC 64
           R +K G P   G+ Q        + ++ N R+++ +++  +    DI+++F  +GKI  C
Sbjct: 181 RNIKVGRPSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDD-DIKSVFEAFGKIKSC 238

Query: 65  SV--------HKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEP 106
           ++        HKGY F++Y   + ++ AV+  N   + GQ L +  A  P
Sbjct: 239 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 288



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 31  SINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV--------HKGYAFVQYMSERHAR 82
           +I  RV++G++   + +   I   F+ +G I    +        HKG+AFV+Y     A+
Sbjct: 109 AIMCRVYVGSIYYELGEDT-IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQ 167

Query: 83  AAVAGENARVIAGQPLDI 100
            A+   N+ ++ G+ + +
Sbjct: 168 LALEQMNSVMLGGRNIKV 185


>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
           sapiens]
          Length = 559

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 10/110 (9%)

Query: 5   RRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGC 64
           R +K G P   G+ Q        + ++ N R+++ +++  +    DI+++F  +GKI  C
Sbjct: 198 RNIKVGRPSNIGQAQPIIDQLAEEARAFN-RIYVASVHQDLSDD-DIKSVFEAFGKIKSC 255

Query: 65  SV--------HKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEP 106
           ++        HKGY F++Y   + ++ AV+  N   + GQ L +  A  P
Sbjct: 256 TLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 305



 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 9/78 (11%)

Query: 31  SINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV--------HKGYAFVQYMSERHAR 82
           +I  RV++G++   + +   I   F+ +G I    +        HKG+AFV+Y     A+
Sbjct: 126 AIMCRVYVGSIYYELGEDT-IRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQ 184

Query: 83  AAVAGENARVIAGQPLDI 100
            A+   N+ ++ G+ + +
Sbjct: 185 LALEQMNSVMLGGRNIKV 202


>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 35  RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 86
           ++FIG LNT   +K  +E +F KYG+IV   + K        G+AFV + S   A+ A  
Sbjct: 9   KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 87  GENARVIAGQPLDINMAGEPKPYRPKPGNKRP 118
             N + + G+ + +  A +P   R + G   P
Sbjct: 68  DMNGKSLDGKAIKVEQATKPSFERGRHGPPPP 99


>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
           sapiens]
          Length = 390

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)

Query: 35  RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 86
           ++FIG LNT   +K  +E +F KYG+IV   + K        G+AFV + S   A+ A  
Sbjct: 9   KLFIGGLNTETNEKA-LETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 87  GENARVIAGQPLDINMAGEPKPYRPKPGNKRP 118
             N + + G+ + +  A +P   R + G   P
Sbjct: 68  DMNGKSLDGKAIKVEQATKPSFERGRHGPPPP 99


>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
          Length = 391

 Score = 45.1 bits (105), Expect = 8e-05
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 9/80 (11%)

Query: 35  RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHK--------GYAFVQYMSERHARAAVA 86
           ++FIG LNT   +K  +EA+F KYG+IV   + K        G+AFV + S   A+ A  
Sbjct: 9   KLFIGGLNTETNEKA-LEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 87  GENARVIAGQPLDINMAGEP 106
             N + + G+ + +  A +P
Sbjct: 68  DMNGKSLDGKAIKVEQATKP 87


>gi|239752336 PREDICTED: similar to RNA binding motif protein,
           X-linked [Homo sapiens]
          Length = 138

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 35  RVFIGNLNTAIVKKVDIEAIFSKYGKIV------GCSVHK--GYAFVQYMSERHARAAVA 86
           + FIG LNT   KK  +EA+F KYG+IV       C  +K  G+AF+ +     A+ A  
Sbjct: 9   KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67

Query: 87  GENARVIAGQPLDINMAGEP 106
             N + + G+ + +  A +P
Sbjct: 68  DMNGKSLDGKAIKVEQATKP 87


>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
           sapiens]
          Length = 138

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 9/80 (11%)

Query: 35  RVFIGNLNTAIVKKVDIEAIFSKYGKIV------GCSVHK--GYAFVQYMSERHARAAVA 86
           + FIG LNT   KK  +EA+F KYG+IV       C  +K  G+AF+ +     A+ A  
Sbjct: 9   KFFIGGLNTETNKKA-LEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKDAAR 67

Query: 87  GENARVIAGQPLDINMAGEP 106
             N + + G+ + +  A +P
Sbjct: 68  DMNGKSLDGKAIKVEQATKP 87


>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
          Length = 344

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 35  RVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFVQYMSERHARAAVAGENARVIA 94
           RV+IG L+  + +K DI+  FS YG+++   +  GY FV++   R A  AV   N + + 
Sbjct: 3   RVYIGRLSYNVREK-DIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELC 61

Query: 95  GQPLDINMAGEPK 107
           G+ + +  A  P+
Sbjct: 62  GERVIVEHARGPR 74


>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 36  VFIGNLNTAIVKKVDIEAIFSKYGKIVGCSV------HKGYAFVQYMSERHARAAVAGEN 89
           +++GNL+  + + + ++ +FS+ G    C +      +  Y FV++   RHA AA+A  N
Sbjct: 9   LYVGNLSRDVTEALILQ-LFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMN 67

Query: 90  ARVIAGQPLDINMAGEPKPYRPKPGN 115
            R I G+ + +N A  P   +    N
Sbjct: 68  GRKIMGKEVKVNWATTPSSQKKDTSN 93



 Score = 37.7 bits (86), Expect = 0.013
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 21/113 (18%)

Query: 15  TGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVH--KGYAF 72
           T +     V N++ P   N  V+ G + + + +++ +   FS +G+I+   V   KGY+F
Sbjct: 186 TKQLSYDEVVNQSSPS--NCTVYCGGVTSGLTEQL-MRQTFSPFGQIMEIRVFPDKGYSF 242

Query: 73  VQYMSERHARAAVAGENARVIAG---------QPLDI-------NMAGEPKPY 109
           V++ S   A  A+   N   I G         + LD+       N  G P+PY
Sbjct: 243 VRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPY 295


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,472,710
Number of Sequences: 37866
Number of extensions: 610693
Number of successful extensions: 4242
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 292
Number of HSP's that attempted gapping in prelim test: 3709
Number of HSP's gapped (non-prelim): 778
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.