Guide to the Human Genome
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Name: CHRNA2 Sequence: fasta or formatted (529aa) NCBI GI: 153792669
Description:

cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)

Referenced in:

Acetylcholine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         28           1
 C cysteine            2.6         14           2
 D aspartate           4.7         25           1
 E glutamate           5.7         30           3
 F phenylalanine       4.5         24           2
 G glycine             5.3         28           2
 H histidine           3.4         18           2
 I isoleucine          6.4         34           2
 K lysine              4.0         21           2
 L leucine            12.1         64           3
 M methionine          2.5         13           2
 N asparagine          2.8         15           2
 P proline             7.4         39           4
 Q glutamine           1.9         10           2
 R arginine            3.8         20           2
 S serine              7.4         39           2
 T threonine           6.2         33           2
 V valine              7.8         41           3
 W tryptophan          3.2         17           2
 Y tyrosine            3.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cholinergic receptor, nicotinic, alpha polypeptide ... 
CHRNA4                0.515   cholinergic receptor, nicotinic, alpha 4 subunit prec...
CHRNA3                0.486   cholinergic receptor, nicotinic, alpha 3 
CHRNA6                0.455   cholinergic receptor, nicotinic, alpha 6 
CHRNB3                0.416   cholinergic receptor, nicotinic, beta polypeptide 3 [...
CHRNB2                0.409   neuronal nicotinic acetylcholine receptor beta 2 prec...
CHRNA5                0.396   cholinergic receptor, nicotinic, alpha 5 
CHRNB4                0.395   cholinergic receptor, nicotinic, beta 4 
CHRNA1                0.370   nicotinic cholinergic receptor alpha 1 isoform b prec...
CHRNA1                0.357   nicotinic cholinergic receptor alpha 1 isoform a pre...
CHRNA7                0.308   cholinergic receptor, nicotinic, alpha 7 precursor [H...
CHRNB1                0.299   nicotinic acetylcholine receptor beta 1 subunit prec...
CHRND                 0.283   nicotinic acetylcholine receptor delta polypeptide pr...
CHRNA9                0.264   cholinergic receptor, nicotinic, alpha 9 precursor [...
CHRNA10               0.258   cholinergic receptor, nicotinic, alpha 10 
CHRNE                 0.253   nicotinic acetylcholine receptor epsilon polypeptide ...
CHRNG                 0.240   cholinergic receptor, nicotinic, gamma polypeptide p...
CHRFAM7A              0.217   CHRNA7-FAM7A fusion isoform 1 
HTR3A                 0.168   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3A                 0.166   5-hydroxytryptamine (serotonin) receptor 3A isoform...
CHRFAM7A              0.160   CHRNA7-FAM7A fusion isoform 2 
HTR3A                 0.154   5-hydroxytryptamine (serotonin) receptor 3A isoform...
HTR3B                 0.124   5-hydroxytryptamine (serotonin) receptor 3B precursor...
HTR3E                 0.123   5-hydroxytryptamine receptor 3 subunit E 
HTR3C                 0.118   5-hydroxytryptamine receptor 3 subunit C 
GABRB1                0.058   gamma-aminobutyric acid (GABA) A receptor, beta 1 p...
GABRG1                0.056   gamma-aminobutyric acid A receptor, gamma 1 precurso...
GABRP                 0.056   gamma-aminobutyric acid (GABA) A receptor, pi 
GABRB2                0.055   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GABRB2                0.055   gamma-aminobutyric acid (GABA) A receptor, beta 2 is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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